Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             <-----------HVH21                                  ----------->ARR10                                               <--                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                    <--- ----ANAC58                     <---------ZAT14                                          <-----------GT1 ----ANAC46                    <---------ANAC46                              <----------DOF2     ---- ----ANAC58                    xxxxxxxxxxxxxxxx>smallRNA(s)       ------->TEIL        <---------AHL20(2)   tgtcgaattttgtgagtgtatcaagttttgagagcgtagagtctgtgtcaagttttgagagtcaaatgtatcccaaacactttcacatttttttcaaaat  13181000                                     <---------AHL20(2)                                    <---------AHL20(2)                                 <---------AHL20(2)                               <---------RVE1(1)         <---------AHL20(2)   <---------ARR11(3)                                                  <--         --------->AHL20(2)   --------->ARR11(3)                       --------->ARR11(3)         --- -------AHL20(2)             <------ZmHOX2a(1)                         <---------ARR11(3)         --- ------AHL20(2)            <---------TOE1(3)                           --------->GLK1(2)         ---- ----->AHL20(2)            <---------TOE2(3)                          <---------GLK1(2)     ---------   ttttttttagttttattagaaactcacttaaggatttttttaatggaccaaaaatttttcaaaaactctacaaaatctctaaactacaaaaatatcaaaa  13181100             <-------TEIL      --------->AHL20(2)                       <-------GAMYB  <---------AHL20(2)                          <---------MYB46(3)             --------->AHL20(2)  --------->AHL20(2)                   --------->MYB46(3)               --------->AHL20(1) -------AHL20(2)                     --------->MYB52(1)                 <---------AHL20(2) ------>AHL20(2)       --------->TOE2(3)   <-----------RAV1(1)          --------->AHL20(2) ------>AHL20(1)       <---------------AGL15 --------->ALFIN1        --------->YAB1----------->GT1 ----->AHL20(2)        <---------MYB59-------->P<--------P --------->ZAT18   --------->AHL20(1) >YAB1--------->YAB1<-----------GT1<---------MYB52(2)      <---------ZAT14   <---------AHL20(2)   ttaattaataaaaaatacatagaaaccttacttagaaactaaccaatgtggttgctctgagagtactacaaaaataaaataaaatgtgtaatatacaaat  13181200                                                               <---------------AGL15                -                                                               --------------->AGL15                -                                                              <-----------------AGL2                <                 --------->MYB52(1)                           ----------------->AGL2                <         --------->ANAC55(2)           --------->At5g28300    <-----------------AG                ---         <---------ANAC55(2)<-------TEIL                      <-----------------AGL3          <------   tgcaagagaatacataacataacagagaaattcatatgtacagtaattgaaaatcgtcgagtaaaccaattttggtttggataccaattcagtttttggt  13181300                                     --------->ANAC58                                     --------->ANAC46            --------->AHL20(1)       <---------ANAC55(2)            <---------AHL20(2)       --------->ANAC55(1)           --------->AHL20(2)        --------->ANAC58           <---------AHL20(2)        --------->bZIP60(2)      <---------MYB52(1)             --------->O2     ----------->GT1                 <---------O2   <---------ANAC46                  --------->TGA1a  <-------TEIL              <---------ATHB12 --------->ARR14(1)     ------------>CBF               <---------ALFIN1 --------->GLK1(2)      <---------ATHB12          --------->ANAC58 --------->CCA1(2)     --------->ANAC58           --------->ANAC58            --------->ARR11(3) -------->ARR14(2)     --------->ANAC46    <---------ARR11(3)                 <---------ARR11(3) -------->ARR11(1)     --------->ANAC58    --------->ARR11(3)                --------->RVE1(1) ---------ARR14(2)  --------->MYB46(3) >>>>>>>>>NAP   --------->MYB46(3)     --------->CCA1(1) ---------GLK1(2) <-----------GT1    <---------TGA1a ------->TEIL          --------->AHL20(2)     *TSS -------->ARR10 --------->AHL20(2)   --------->ANAC55(2)           --------->TOE2(3)              --- ---MYB46(3)--------->AHL20(2)   <------ZmHOX2a(1)--------->ANAC46 --------->TOE1(3) --------->ANAC46   tagattcgggtaattaaattaaaccactcaatgaaggacacgtaagttcttcacgaaccacatctgttcccttaaaaaaaaatctccaagtcccttgcac  13181400                                            --------->GLK1(2)                                           --------->ARR14(2)                                    --------->ZAT2                                    <---------ZAT2         <----------DOF2   <---------ICU4  <---------GLK1(2)     ------>ZmHOX2a(1)     --------->ARR14(2)     ------>ZmHOX2a(1) <-----------GT1           <---------ARR14(2) <-----------GT1       --------->At4g35610 ------>ZAT14         ------>ZmHOX2a(1)    <---------ARR14(2)       <---------At4g35610  ---------->ID1   tattctcctctctttctctccatcctccatatttgcagagctcgagattctccttccctatacaactctcatctgtaatcgatacaggtttgtcttctac  13181500                                                                                   <----------DOF2                                                                               ---------->ID1                                                                             <---------ANAC58                  <----------DOF2                                            <---------ANAC58               --------->GLK1(2)  --------->At4g35610                  <---------YAB1              <---------GLK1(2)  <---------DEAR3(1)                 --------->GLK1(2)            ----------->ARR10  <-----------HVH21                   <---------GLK1(2)       --------->MYB52(2)        <---------MYB46(3)    --------->ANAC46                     --------->ARR14(2)    <---------MYB52(1)     <----------DOF2 --------->YAB1           ----------->HVH21    <---------ARR14(2)  <---------ZAT6   ctcttctctttggttagattcttttataatctccgtcgctgcataactctgactgggttttcttcggcaaattctgatttcgtcgctttgtgttagtttt  13181600                                                                        <---------ANAC58                                                                        <---------ANAC58                                                                       <-------TEIL                                                                      --------->ARR11(3)                                                                    <------MYB83                                                                    <------MYB46(1)                                                                   --------->MYB46(2)                                                                   --------->MYB52(2)                                                                   --------->MYB111(1)                                                                <-------GAMYB                <-------                <-----------GT1                          --------->At4g35610                 <-------  <---------ANAC58                         <-----------GT1------>ZmHOX2a(2)                  <-------  <---------ANAC46                     <---------YAB1    <---------At4g35610        --------->ANAC58  <---------ANAC58          --------->ARR11(3)      <----------DOF2--------->MYB59  --------->ANAC58   agttccttgatttctaattcactgaattaagaactcgaagtatgtttactgttcctttgatctgagggttaggttcttgtacttgtaagaaacttgcttg  13181700                                                                             <---------At4g35610                                                                           --------->REM1(1)                                                                          <-------TEIL                                                                       --------->At4g35610                                                 <----------DOF2       <------NtERF2                                           <-----------GT1             --------->ZAT2                                      <---------AHL20(2)               <---------ZAT2 --ANAC58                            <---------AHL20(2)         <---------At4g35610   <---------ANAC58 --ANAC46                            <---------AHL20(1)         --------->At4g35610   <---------ANAC58 --ANAC58                            --------->AHL20(2)  ------->TEIL  <---------At4g35610<---------ANAC46   ttctgtctcatcgttcatgggatttgatatatcatctaattaatttttcttctttgatgaattttcagatggcagcttcatcagcttgtcttgtgggaaa  13181800                       ------>MYB83                       ------>MYB46(1)                       --------->MYB52(1)                     ------->GAMYB                     <---------MYB59             ------>NtERF2                     --------->AtMYB61           --------->LBD16                   --------->ANAC58             --------->ANAC46                   --------->ANAC58             --------->HSFB2a(2)                  ------->GAMYB                 <---------HSFB2a(2)                 <---------MYB111(2)            <---------ATERF1(2)                 --------->MYB46(3)             <---------LBD16                 <---------MYB55(2)             --------->ATERF1(2)        --------->ATHB12         <---------ZAT14                        <---------RAP2.6(2)   <---------ZAT14    <---------TOE1(3)         --------->ZAT14          <---------ANAC55(2)        --------->ANAC58            <---------TOE2(3)         <---------ZAT18          --------->ANAC55(2)        --------->ANAC58--------->ICU4    <-----   <-----------HVH21--------->MYB46(3)         <---------LBD16  <----------DOF2  <------ZmHOX2a(1)   tggtttgtcagtgaacacaacaaccaaacagaggttaagtaaacatttttccggcagacagacaagcttttcttcagtgattaggacatctaaggttaat  13181900  Previous    Next  AGI:  At2g30950.1    Description:  VAR2 (VARIEGATED 2); ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding. similar to FTSH8 (FtsH protease 8), ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G06430.1); similar to ATFTSH6/FTSH6 (FtsH protease 6), ATP-dependent peptidase/ ATPase/ metallopeptidase/ peptidase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G15250.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69920.1); similar to FtsH-like protein Pftf precursor [Nicotiana tabacum] (GB:AAD17230.1); contains InterPro domain AAA AT Range:  from: 13181398    to: 13184300    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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