Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       ------->GAMYB                                   ------>MYB46(1)                                   ------>MYB83                                  --------->MYB52(1)                    --------->ARR11(3)                                <-------TEIL         --------->ANAC46         ----------->RAV1(1)        <---------YAB1      ----------->GT1         --------->ANAC58       --------->MYB46(3)    <---------TOE1(3)        ---------->DOF2    <--         --------->ANAC58       --------->DEAR3(2)    <---------TOE2(3)--------->ATHB12         <---- ---->HVH21  ---------->DOF2 <------ZmHOX2a(1)    <----------DOF2 <---------TOE2(3)             <----   cagggatgtacaagcgaaagaagaaattgcaggaaccaacagaagaattggggtttagggtttatgctaagattcattgtagaaagtaaaaatccaaact  12934600                          <---------HSFC1(2)                          --------->HSFC1(2)                          <---------HSFB2a(1)                  <---------YAB1 ---------GT1  --------------->AGL15     ------->TEIL ------DOF2    <---------------AGL15<----------DOF2 -----DAG2     <----------DOF2  <---------CCA1(2)                 ---------->DOF2   ttacgacttgaaacttacttttgatagaagggtcgtctctttgaatctgtaagcctgaaaatggagaacaaagtcacaaactttatacagaagaatgctt  12934700                                                           <---------ARR14(2)                                                           --------->ARR14(2)                                                           ------->TEIL                                                          <---------CCA1(2)                                                        <---------O2                 <---------ATHB12                       --------->ANAC58                ------>MYB83                            --------->ANAC58               --------->WOX13(1)                       <---------TGA1a           <-----------GT1                              --------->ANAC55(1)        --------->YAB1                                  --------->ANAC55(2)        --------->AHL20(2)                              --------->O2        <---------AHL20(2)                              --------->TGA1a     <--------HAHB4                                     <---------ANAC55(2)     --------->ATHB51                                   --------->ANAC46     <---------ICU4                                <---------ZAT18    <---------YAB1   <------ZmHOX2a(1)         <---------ICU4    --------->ICU4--------->YAB1               --------->YAB1                                <-------  --------->YAB1------>MYB46(1)               --------->ICU4                       <<<<<<<<<TBF1   caattcataattaaaaccaatcaggaactaaacattcttacctctgtaatcagtacccacgtatccaattcgaatgacgaccttcttcttccgatatgat  12934800                                                                     <------NtERF2                                                                   --------->ALFIN1                                                                   <---------DEAR3(1)                                                                   <---------ANAC46                                                                  ------>NtERF2                                                                  --------->ATERF1(1)                                                                  <---------LBD16                                                                  <------NtERF2                                                                  <---------At4g35610                                                                 <---------RAP2.3(1)                                                                <---------RAP2.6(2)                                                                <---------DEAR3(1)                                                                <---------RAP2.3(2)                                                                <---------RAP2.3(3)                                            <---------ANAC46    <---------RRTF1(3)                                          --------->ZAT18       <---------RRTF1(2)                                          --------->ZAT14      <---------LBD16                                  <------NtERF2        <---------At4g35610                                  --------->At5g28300  --------->At4g35610       ----------->GT1                                 <---------DEAR4(2)  <---------RAP2.6(2)         --------->YAB1                                <---------DEAR3(1)   <---------DEAR3(1)        --------->GLK1(2) ----                      --------->ETT(1)    <---------ZAT14   ---------->DOF2   <---------GLK1(2)<----- --YAB1       ---------->DOF2   <---------DREB2C(2) --------->RAP2.6(3) <------ZmHOX2a(1)      <-----   tcccatttatcggcgagaaagttgtcggaagaaggcggtgagagtgaagtagaagacggctgaaatgcggcggaggaagagaatcgtaataacgctggtg  12934900                                 --------->LBD16                                --------->ANAC58                             <---------ARR14(2)                                                     -                             --------->ARR14(2)                                                   ---                       <---------HSFB2a(2)                                                        <--                 <---------MYB46(3)                                                               <<<   --------->LBD16     --------->HSFB2a(2)                                                     <----- ------->HVH21  <---------ANAC46--------->ANAC58                                               ------ ----ANAC58   <-----------HVH21 --------->ANAC46                                               ------ ----ANAC58 <---------DEAR3(2) <---------LBD16 <---------GLK1(1)                               <-----   tgacccgaataagtcgggtcgggtaccagaagacccgcgatggaattggaattcgtagaaacgagactgccatgagaaataaaacttggctaagtttcta  12935000           --------->TOE2(3)     ------>NtERF2   --------->RAP2.3(1)  --------->LBD16                                       ------------>CBF --------->DEAR3(1)                                <---------MYB52(1) -------->DEAR3(2)                                <---------RAP2.6(3)                  ----------->GT1 ------>ARR14(2)                                 <---------ANAC46                    <------------CBF -------ARR14(2)                                 <---------ANAC58                  --------->ARR11(3) <<<<ZML2 --------->YAB1   --------->GLK1(1)<---------ANAC55(2)                    <---------AHL20(1) ----HSFB2a(2)         <---------MYB52(1)   <---------ANAC58                       --------->AHL20(1) --->HSFC1(1)         --------->LBD16       <---------ANAC58 --------->AHL20(2)   <---------AHL20(2) --->HSFB2a(2)      <---------LBD16         --------->ANAC55(2)                 <-----------TBP ----HSFC1(1) ---------->DOF2  <----------DOF2   <---------ANAC58          ----------->GT1          <   gaaccggcgctaacataaaagctccggtgatttcttttgtcaaactacgtgccgttttgtcaatttaaaacacggttttgttatatatattgtaaaacat  12935100                                                                          ------>ZmHOX2a(2)                                                                        <---------ARR14(2)                                                                <----------DOF2                                                               <---------ANAC46                                                   ------>ZmHOX2a(1)    --------->ARR14(2)                            --------->ALFIN1       ================HOX2a_HOX2a                           ------->MYC3            =================HOX2a_HOX2a  --------->HSFB2a(2)                          <---------ANAC46         ==============================HOX2a_HOX2a       <-            --------->ZAT14<-------MYC3   --------->AHL20(2) ------>ZmHOX2a(2)   <---------HSFB2a(2) ------ZmHOX2a(1) ----------->TBP       <-----------TBP     <------ZmHOX2a(2) <----------DOF2      <-   caggacgttggaactgaactatatatcaacgtgtagttttttttttatatatcctatgcacgatcgcgttttgggatcgtcttttagaactgaacatttc  12935200                        ------>ZmHOX2a(2)                       <------ZmHOX2a(2)                      <---------ARR14(2)                      --------->ARR11(3)                      --------->AGP1                      <---------AGP1                                                --------->ZAT14                 <---------ANAC46                                                   <---------ZAT14                <---------TOE1(2)                                               --------------->AtSPL8               ------>ZmHOX2a(1)                                                --------------->AtSPL3               ===============HOX2a_HOX2a                              <------------CBF              --------->TOE1(2)       --------->TOE2(3)           --------->HSFB2a(2)      <------------CBF<---------ARR11(3)                          <---------HSFB2a(2)   ------------>CBF  <---------CCA1(2)<---------DAG2       ------------>CBF    <---------ZAT2 --------ICU4 --------->TOE2(2)       <---------MYB59    --------->GLK1(2)     --------->ZAT2 -----------CBF================HOX2a_HOX2a      <---------TOE2(3) <---------HSFC1(1)<---------ZAT18 <   atattgacaattgattcctacgtagatctaaacttctctaccttattatctaggttgagattccaattctcgaaattgccaagctgtacactcactattc  12935300                                                  <----------DOF2                                          <---------ARR11(3)                                      ---------->DOF2                           --------->ATHB12               ---------->ID1        <---------MYB52(1)                      --------->TOE1(3)              <-----------GT1       --------->TOE2(3)                        --------->TOE2(3)         --------->MYB52(2)        <---------ANAC46                        -------->P<------MYB46(1)       <---------MYB52(1)          <---------ANAC55(2)             <---------------AtSPL8      <-----      --------->TOE2(3) <---------ZAT14   --------->ARR11(3)       --------------->AtSPL8      ------ ---------ARR11(3)<---------MYB52(1)--------->TOE1(3)              <---------TOE1(3) <------MYB83   gtgatattcgttagtttttcgttttgtaaactggattacgttaagctcttctctttcaaacatgttttgaaggtactaaccttgatttggtttccacatg  12935400                                                                                            ---------                                                                             <---------ARR14(2)                                                                             <---------ARR11(3)                                                                             --------->ARR14(2) -----                                                                             --------->ARR11(3) <----                       ---------->DOF2                                       <---------GLK1(2) ------ <---------YAB1    <-------GAMYB             ---------->DOF2         <---------ANAC58     ---------->DOF2 ----YAB1         ----------->GT1       ----------->GT1              <---------ANAC58--------->LBD16 --->ICU4         <---------MYB46(3) --------->MYB52(1)       <-----------HVH21    <---------LBD16<--   attatgcttctcatttatggtcgttaaaagagagccacttaacagttaaaagcttacatttctatgtcattgcctagcagatactcgcgcagaaaaggtt  12935500  Previous    Next  AGI:  At2g30320.1    Description:  tRNA pseudouridine synthase family protein. Identical to Putative tRNA pseudouridine synthase [Arabidopsis Thaliana] (GB:O22928); similar to tRNA pseudouridine synthase family protein [Arabidopsis thaliana] (TAIR:AT1G76120.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21340.1); contains InterPro domain tRNA pseudouridine synthase; (InterPro:IPR001406) Range:  from: 12932805    to: 12934973    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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