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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
------>
ZmHOX2a(2)
=====================
HOX2a_HOX2a
<------
ZmHOX2a(2)
--------->
ARR11(3)
<---------
ARR14(3)
<---------
ARR11(3)
<-----------
ARR10
--------->
ARR14(3)
<---------
ARR14(2)
--------->
ARR14(2)
<---------
AGP1
--------->
AGP1
<---------
ZAT14
--------->
ZAT14
------>
NtERF2
<---------
ETT(2)
<---------
DEAR3(2)
--------->
ETT(2)
<---------
MYB46(3)
<------
NtERF2
======================
HOX2a_HOX2a
<---------
ATERF1(1)
--------->
MYB52(1)
--------
ZAT2
<---------
CCA1(2)
----------->
TGA1
--------->
REM1(2)
------->
ZAT2
----------->
ARR10
----------->
HVH21
<---------
ARR14(2)
--------->
LBD16
--------
At4g35610
------>
ZmHOX2a(1)
--------->
ARR14(2)
<---------
ANAC46
------->
At4g35610
--------->
At4g35610
--------->
ANAC58
--------->
ANAC58
-
NtERF2
<---------
ZAT14
--------->
WOX13(1)
--------->
ANAC58
--------->
ANAC58
--------
--
DEAR3(1)
<---------
ZAT18
----------->
RAV1(2)
---------->
DOF2
--------->
At4g35610
--------->
At5g28300
gagctggcgactgtgcagatcttcatcaatctcctgacggttcgaattaccaaaagccatgtcgatttgctgaacgacgctatcgccgtgaaaacccctg
12864300
--------->
SPL7
<-
----------->
GT1
--------->
ARR11(1)
---------
--------->
At4g35610
----------->
GT1
--------->
MYB46(3)
--------->
HSFB2a(2)
<-------
TEIL
<---------
ARR14(2)
<---------
YAB1
<---------
ATHB12
<---------
HSFB2a(2)
--------->
GLK1(2)
<---------
ANAC46
--------->
DEAR3(2)
--------->
MYB52(1)
<---------
ARR14(2)
<---------
ANAC58
<---------
ARR14(2)
--->
RAV1(2)
--------->
ARR14(2)
<---------
ANAC58
--------->
ARR14(2)
ctactaccagaagctaaaatcgaagaagacttatcagacgaagattcagtgaaatcgatacggcgtttcttagatgatgctaaatcggaaccgatgatgg
12864400
<---------
ANAC58
<---------
ZAT18
--------->
STY1(2)
--------->
ZAT2
--------->
At4g35610
<---------
MYB52(1)
--------->
DOF5.7(2)
--------->
TOE1(3)
<---------
ANAC46
----------->
GT1
<---------
YAB1
<---------
At4g35610
--------->
DAG2
<-----------
GT1
--------->
MYB52(2)
--------->
YAB1
<---------
LBD16
-----
--------
YAB1
--------->
TOE2(3)
<---------
ANAC58
<---------
YAB1
----------->
GT1
-----
>
YAB1
<---------
YAB1
<---------
STY1(2)
---------->
DOF2
----------->
RAV1(2)
<----
tattatcgttcttatcgttagcttcactagctcgcttgtgaagcat
aaagtgatgaaaaaac
ctggagaaaacatgtgaaattcccattagattagagaa
12864500
<---------
WOX13(1)
--------->
TOE1(3)
=
--------->
ZAT6
<
------>
MYB83
<---------
GLK1(2)
------
<---------
ARR14(2)
--------->
MYB55(1)
=========
----------->
GT1
<---------
MYB59
---------
----------->
GT1
<---------
MYB111(1)
----------->
GT1
<------
ZmHOX2a(1)
--------->
ZAT14
--------->
YAB1
<---------
MYB52(2)
--------->
YAB1
================
<---------
ZAT14
<------
ZmHOX2a(2)
------>
MYB46(1)
--------->
CCA1(2)
<----------
DOF2
=
---->
ZAT18
--------->
ARR14(2)
<---------
MYB46(2)
--------->
ANAC58
------->
TEIL
<-----
---->
ZAT14
--------->
GLK1(2)
--------->
ANAC55(2)
--------->
ANAC58
--------------->
AtSPL8
-
-----
ZAT14
<---------
GLK1(1)
<---------
ANAC55(2)
<---------
LBD16
----------->
GT1
<---------
TOE2(3)
cactgaagagagaaaatccgatcagaattgaaatacctaaccctagattgattcttcggaagctatgagaaggaagataaaacgtac
ctttgaggaaagc
12864600
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
CCA1(2)
--------->
At4g35610
===============================
bZIP_DOF
--------->
ARR14(2)
*
TSS
---------
TGA1a
<---------
ARR14(2)
--------->
AHL20(2)
--->
At4g35610
<---------
AGP1
<---------
AHL20(2)
=========
bZIP_DOF
--------->
DAG2
--------->
AHL20(2)
->
DOF2
--------->
ATHB12
---------->
DOF2
--------->
ARR11(3)
=========
bZIP_DOF
<----------
ID1
<---------
ARR11(3)
<---------
GLK1(1)
===============================
bZIP_DOF
--------->
AGP1
------->
TEIL
<---------
ARR11(3)
----
At4g35610
----------->
GT1
--------->
ARR11(3)
----------->
HVH21
<---------
TOE2(3)
-------->
TGA1a
---------->
DOF2
<---------
GLK1(1)
----------->
TGA1
--------->
GLK1(1)
agacgagagaagattggaatcggaaaagagaaaaagtttttgagatctgaaaattgaaattgaagtgacgaattttgcagaaatctctaagatt
tattta
12864700
--------->
MYB55(2)
<---------
MYB46(3)
--------->
ALFIN1
<-------
GAMYB
<------
MYB83
<---------
ANAC58
<------
MYB46(1)
<---------
ANAC46
-
--------->
DAG2
--------->
CCA1(2)
<---------
TOE2(3)
---
---------->
DOF2
--------->
ARR14(2)
<-----------
GT1
--------->
LBD16
--------->
ANAC58
<---------
ANAC46
<---------
ANAC58
------>
NtERF2
--------->
ANAC58
--------->
ALFIN1
----------->
STF1
---------->
ID1
<------
--------->
MYB52(1)
<---------
ANAC46
<---------
TGA2(2)
--------->
ATHB12
<---------
LBD16
<---------
SPL7
--------->
MYB59
----------->
TGA1
<---------
TOE1(3)
<----------
DOF2
---
--------->
CCA1(2)
<-------
TEIL
<---------
ARR14(2)
--------->
MYB52(1)
<-----------
RAV1(1)
--------
agagagacgggcgaacgaaaggggttcggttgtggggggatatgaaacgatgacgttttaacggttaaggtttgatttgtcgctctttctccgcgtgatt
12864800
--------->
ANAC58
<---------
TGA1a
<---------
AHL20(2)
<---------
ANAC55(2)
----------->
GT1
--------->
ANAC46
--------->
LBD16
--------->
ANAC55(2)
------>
ZmHOX2a(2)
--------->
GLK1(2)
--------->
ANAC58
==================================
HOX2a_HOX2a
<------
NtERF2
--------->
TGA1a
<---------
LBD16
<---------
YAB1
------>
NtERF2
--------->
LBD16
--------->
CCA1(2)
------>
ZmHOX2a(1)
<---------
bZIP60(1)
--------->
O2
<------
ZmHOX2a(2)
--------->
HSFB2a(1)
--------->
bZIP60(1)
<---------
O2
--------->
ARR14(1)
------>
ZmHOX2a(2)
<---------
ANAC46
--------->
LBD16
===================================
HOX2a_HOX2a
<---------
ATERF1(2)
<---------
ARR14(2)
--------->
AGP1
--------->
HSFC1(2)
--------->
ATERF1(2)
--------->
ARR14(2)
--------->
ARR14(2)
<---------
HSFC1(2)
-------->
RAP2.6(3)
----------->
HVH21
<---------
ARR14(2)
<---------
HSFB2a(1)
-------->
TGA1
<---------
LBD16
<---------
MYB52(1)
<---------
ARR11(3)
<------
ZmHOX2a(2)
------
CBF
----------->
HVH21
--------->
SPL7
<---------
GLK1(2)
------->
TEIL
------->
TEIL
-------->
HVH21
<---------
LBD16
--------->
ANAC46
--------->
ARR11(3)
--------->
ARR14(2)
<--
->
ATHB12
--------->
WRKY12
<-----------
HVH21
----------->
ARR10
<---------
ARR14(2)
----
gtgacggcaactctctgaccgggggacacgcgtccgtcactatttcaagaccagatccggtttagttaatttcttatggatccttcttatgaatctgtat
12864900
--------->
AHL20(2)
<---------
AHL20(2)
--------->
YAB1
<---------
YAB1
--------->
ICU4
<---------
AHL20(1)
<---------
AHL20(2)
<-----------
GT1
--------->
AHL20(2)
<---------
AHL20(2)
--------->
YAB1
<----------
DOF2
<---------
YAB1
<---------
ANAC58
--------->
AHL20(2)
<---------
ANAC58
--------->
YAB1
-------
AHL20(2)
--------->
AHL20(2)
<----------
DOF2
--------->
TOE2(3)
<-
----->
AHL20(2)
<----------
DOF2
<---------
CCA1(2)
<----------
DOF2
<---------
AHL20(2)
taaatctgaaatattgctttctttttttaattaccaagttcaaaaaaactcacatcttcttttggataactggaaactttaatattataattaaatatta
12865000
<---------
AHL20(2)
<---------
YAB1
--------->
ICU4
<---------
AHL20(1)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
YAB1
<---------
YAB1
--------->
AHL20(2)
<---------
YAB1
--------->
ZAT2
--------->
AHL20(2)
<----------
DOF2
<---------
ZAT2
--------->
YAB1
--------->
YAB1
<---------
At4g35610
--------->
AHL20(2)
<-------
-----
ZmHOX2a(2)
------->
TEIL
<-------
TEIL
--------->
GLK1(2)
<-------
TEIL
<-------
gatcaatttccagctatgaatattataattaaatacattttcttctaaagtttctcaaaacaatcttttgaaaaaaaattcatgactttctatgacttta
12865100
--------->
AHL20(2)
<---------
AHL20(2)
--------->
ATHB51
<--------
ATHB1
--------->
AHL20(2)
<---------
AHL20(2)
<---------
ICU4
--------->
ICU4
--------->
YAB1
--------->
YAB1
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<---------
YAB1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
AHL20(2)
--------->
MYB46(3)
<---------
CCA1(1)
------->
TEIL
<---------
YAB1
<---------
RVE1(1)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
GLK1(2)
---------->
DOF2
--------->
AHL20(2)
<---------
ARR11(3)
<-
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
YAB1
<---------
AHL20(2)
<------
---------->
DOF2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
WOX13(1)
--------->
AHL20(2)
-------
--
DAG2
<xxxxxxxxxxxxxxxxxxx
smallRNA(i2)
--------->
YAB1
<---------
RVE1(1)
<------
---
DOF2
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<---------
ATHB12
--------->
ARR11(3)
--------->
ZAT6
ttttgtgaaagaaaatgtagaaagtcatgaaccaataacataataatttaaatcataaacaatcagagatttttttgttttaatagaataacacaaaaaa
12865200
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AGI:
At2g30110.1
Description:
ATUBA1 (ARABIDOPSIS THALIANA UBIQUITIN-ACTIVATING ENZYME 1); ubiquitin activating enzyme. similar to ATUBA2 (Arabidopsis thaliana ubiquitin activating enzyme 2), ubiquitin activating enzyme [Arabidopsis thaliana] (TAIR:AT5G06460.1); similar to ubiquitin activating enzyme 2 [Nicotiana tabacum] (GB:BAD00984.1); similar to ubiquitin activating enzyme 1 [Nicotiana tabacum] (GB:BAD00983.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21409.1); contains InterPro domain Ubiquitin-activating enzyme, E1; (InterPro:IPR000011); contains InterPro domain UBA/THIF-type NAD/FAD binding fold; (InterPro:IPR000594); contains InterPro domain NAD(
Range:
from: 12859449
to: 12864694
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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