Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      <---------TOE2(3)                                                                        ------>ZmHOX2a(2)                                                                       --------->CCA1(2)                                                   ------>ZmHOX2a(2)   <------ZmHOX2a(2)                                                  <------ZmHOX2a(2)   <---------ARR14(2)                                                 --------->ARR14(2)   --------->AGP1--------->ANAC58             <---------CCA1(1)                   --------->ARR11(3)   <---------AGP1--------->ANAC58             <---------RVE1(1)                   <---------ARR14(2)   --------->ARR14(2)            <---------ARR11(3)                   <---------ARR11(3)   <---------ARR11(3)            --------->ARR11(3)           <---------ANAC55(2)          <-----------ARR10           <<<<<<<<<RAP2.2    <---------AtLEC2  ==============================HOX2a_HOX2a     <---------ARR11(3)   --------->At4g35610   <------ZmHOX2a(1)     --------->ARR11(3)     --------->ARR11(3)   <---------At4g35610   ===============================HOX2a_HOX2a          - ------>At5g28300 <---------YAB1   <---------TOE2(3)                ----------->ARR10         -------   agtgaaagattttagatattttgattccatctgcattgagattacctataggatctatagacggagagagtagatctacgctcatcaaggaaactctata  12062900               --------->TOE2(3)            <---------ALFIN1            --------->AtMYB61                                                           --------->WOX13(1)      --------->YAB1                                                                   <---------WRKY12      <---------ICU4                                       ---------->ID1             --------->WRKY18(1)     <---------YAB1                          ---------->DOF2                         <-----------HVH21   <---------ICU4                       --------------->AGL15               <----------DOF2   --------->YAB1                       <----------DOF2 <----------DOF2     <---------DAG2 -------->WOX13(1)           ------>ZmHOX2a(1)          <---------DAG2   <---------ALFIN1     <------ -->ZAT14   --------->DEAR3(1)          <---------------AGL15       <---------ZAT6<---------AtLEC2<XX   gtccatcatcatcaccacctcaattccattcctctgtttcttctttaaaaagctctcacttttcgttatagtgttccactttttgcaggtcaatcgcagt  12063000                                                                                       --------->RVE1(1)                                                                                      --------->ARR11(3)                                                                                      <---------ARR11(3)                                                                             --------->HSFC1(2)                                                                             --------->HSFB2a(1)                                                                             <---------HSFB2a(1)                                       ------>ZmHOX2a(1)                    --------->ARR14(2)               --------->LBD16         =========================HOX2a_HOX2a <---------ARR14(2)              --------->ANAC46      ------>ZmHOX2a(1)                       <---------ARR11(1)             <---------LBD16    --------->DEAR3(1)             <---------ARR11(3)     --------->GLK1(2)   --------->LBD16          --------->ZAT18                    --------->ARR11(3)    <---------GLK1(2) --------->LBD16 --------->ARR14(2) ============================HOX2a_HOX2a ------->TEIL <---------LBD16 <---------ARR14(2)<---------ALFIN1      <------ZmHOX2a(2) <---------CCA1(2) ---TOE1(2)<-----------GT1  <---------ZAT18             --------->ARR11(3) <---------ARR14(1) XXXXXXXXXXXXXXXXXXMIR395A/D/E  <---------ALFIN1        <---------ARR11(3) <---------GLK1(2)     <---   ttccccagagatttcaccggaaccctagagagcacctcctcctccatatcaattggaagatcgaacatcttcgaatcgaatctcccaaaatctctctctc  12063100        --------->WOX13(1)                                                         <---------WRKY38(1)   --------->LBD16                                                               <-----------HVH21  --------->ANAC55(2)     --------->ANAC46                               --------->YAB1  <---------ANAC58        --------->ANAC58                              <---------YAB1  <---------ANAC55(1)     --------->ANAC58                              <---------TOE1(3)  <---------ANAC58     <---------REM1(2)     <-----------GT1            <---------TOE2(3)  <---------ANAC46<---------CCA1(2)    <---------ZAT6               <----------DOF2<---------WRKY12 -------DOF2--------->WOX13(1)   <----------DOF2     <----------DOF2<---------DAG2--------->WRKY18(1)   ttttccgtgtctatcaatccatctcttcacgccctcttttagtgatataacttatctttttcaatttgggctttatggtaatgggtcaaggcccattaag  12063200                                                   --------->ATHB12                                                 --------------->AGL15                   <---------YAB1                <---------------AGL15                 --------->ATHB12               <-----------------AGL2                    *TSS                <---------YAB1                  <-----------------AGL3             <---------CCA1(2)   <---------ANAC46<---------WOX13(1)    <-----------GT1                    ----------->HVH21    <---   gggtctcgtttagaactcttgattaatgtctgaaataagttttatacatttcttcatttggagagtcatttcgcagagacgacgcatagcttcttcactt  12063300                                                         ------>ZmHOX2a(2)                                                        --------->GLK1(1)                                                        <------ZmHOX2a(2)                                                        <---------GLK1(1)                                                       <---------AGP1                                                       <---------ARR11(1)                                                       <---------ARR11(3)                                                       --------->ARR14(2)                                                       <---------ARR14(2)                                                      <---------CCA1(2) <---------ZAT2   ----------->RAV1(2)                --------->LBD16 --------->At4g35610               <---------At4g35610<---------ARR14(1) --------->ZAT2   <---------At4g35610              <---------LBD16 <---------At4g35610        <-----------GT1   --------->HSFB2a(2)      <---------At4g35610       <<<< --------HVH21    --------->At4g35610         <---------HSFB2a(2)   ---------->DOF2<----------DOF2   gtcagctctcaacgtttctcacctgaaatttcacttctgcttcgtcttctcgagccggatctctaatttgtaaagctccctctctctttcttcttgttct  12063400                                                    <-------GAMYB                          <---------MYB52(1)        --------->At4g35610                        ------>ZmHOX2a(2)           <---------At4g35610                        ----------->GT1            --------->MYB52(2)            --------->ZAT14        <---------------AGL15            <---------ZAT14        --------------->AGL15                                     <-------        =======================HOX2a_HOX2a     <---------ANAC46                              <-------        ------>ZmHOX2a(1)<-------GAMYB   <---------TOE2(3)                    --------->ARR14(2)   ---------->ID1  <---------WOX13(1)    <---------TOE1(3)                    <---------ARR14(2) ---- <<<<<TBF1  <---------REM1(2)     <-----------------AGL2          <---------ZAT6        <----------DOF2   tcttcgtctccttctacactgatggatcgttatttagctatttagggttttgtgagttgcattaactagagtaactcgcgaattcttctcctttgccttg  12063500                                                    <---------LBD16                                                    --------->LBD16                <---------At4g35610                <---------ANAC58                --------->At4g35610                <---------ANAC58                                 -   <---------LBD16                              <---------ARR14(2)          ------->TEIL            - --ANAC58 <---------AHL20(2)      ------------>CBF <---------ANAC46       <---------ZAT18           - --ANAC58 --------->AHL20(2) *TSS<-----------GT1--------->ARR14(2)   <------------CBF             <-- ------------->AGL1  <-----------HVH21          ------->TEIL    <---------ANAC55(2)               <<<   cgatttggggaattttttagctccatcagccaattttacaattttgtatgtatccgtggatttatcacatgaattgtggacctctgagtttttttttttt  12063600         ---------->ID1             --------->AHL20(2)     <---------ANAC58    <-------TEIL                <-------TEIL               <---------ANAC58 <------MYB83               <---------TOE2(3)            <-----------GT1                   <------MYB83 <------MYB46(1)            --------------->AtSPL8   --------->ATHB12                      <------MYB46(1) -------->MYB59             --------->MYB59     <---------DAG2                            --------->MYB46(2) -------->MYB46(2)      <----------DOF2         <----------DOF2                           --------->MYB59 -------->MYB111(1)    <---------ANAC58      ------>ZmHOX2a(1)  <----------DOF2  <---------AHL20(2) -------MYB52(1)       <---------ANAC58  <-----------GT1 <---------AHL20(2)    <----------DOF2 <<<<<<MYB98 <----------DOF2<---------------AtSPL8  <---------YAB1          <---------AHL20(2)    <--   gttaggttcttctcgctttagttttgcttttaggtacataaattttcctcctttatgatttacttgctcttgggctattttcttttatttgtttggtatg  12063700                                                                                               <-----                                                <------MYB46(1)                       <---------ARR11(3)                                                <------MYB83                          --------->ARR14(2)                                              <--------P                              --------->ARR11(3)                                             <---------ANAC46                         <---------ARR14(2)                                            --------->MYB55(2)                    <---------ICU4                                            --------->ATHB12                      --------->YAB1                                            <---------MYB46(3)                   <---------ATHB12                                      <<<<<<<<<<<<<<<<<LFY                ----------->GT1  <---------AtLEC2 -------ANAC46                       <---------ZAT18           <---------AHL20(2)--------->ICU4<-----   gagtatggactctagagtttagtttagtttttttttttgggcacattggttggaattagtcttgttttattctgaattgtgtaatcaatatctgcatgct  12063800  Previous    Next  AGI:  At2g28280.1    Description:  pseudogene, hypothetical protein Range:  from: 12061813    to: 12063529    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g28290.1    Description:  SYD (SPLAYED). similar to ATCHR12, ATP binding / DNA binding [Arabidopsis thaliana] (TAIR:AT3G06010.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71034.1); similar to hypothetical protein OsI_021625 [Oryza sativa (indica cultivar-group)] (GB:EAZ00393.1); similar to putative STH1 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45237.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain Helicase/SANT-associated, DNA binding (InterPro:IPR014012); contains InterPro domain DEAD-like helicase, N-term Range:  from: 12063290    to: 12080160    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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