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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                      --------->RVE1(1)
                                                                                     --------->GLK1(2)
                                                                                     --------->ARR11(3)
                                                                            <---------HSFB2a(1)
                                                                            --------->HSFC1(2)
                                                                            --------->HSFB2a(1)
                                      =========================HOX2a_HOX2a ------->TEIL
                                      ------>ZmHOX2a(1)                    <---------ARR14(2)
              --------->LBD16      ============================HOX2a_HOX2a <---------ARR11(1)
             --------->ANAC46  <---------ALFIN1                            --------->ARR14(2)
            <---------LBD16    --------->DEAR3(1)             <---------ARR11(3)     <---------ARR11(3)
  --------->LBD16          <---------ZAT18                    --------->ARR11(3)    <---------GLK1(2)
<---------LBD16 --------->ARR14(2) ------>ZmHOX2a(1)    <------ZmHOX2a(2) <---------CCA1(2)
--------->LBD16 <---------ARR14(2)<---------ALFIN1     <---------ARR11(3) <---------GLK1(2)
---TOE1(2)<-----------GT1  --------->ZAT18             --------->ARR11(3) <---------ARR14(1)    <---
 
ttccccagagatttcaccggaaccctagagagcacctcctcctccatatcaattggaagatcgaacatcttcgaatcgaatctcccaaaatctctctctc  12063100
       --------->WOX13(1)                                                         <---------WRKY12
  --------->LBD16                                                               <-----------HVH21
 <---------ANAC58        --------->ANAC58                               --------->YAB1
 <---------ANAC46        --------->ANAC46                              <---------TOE2(3)
 <---------ANAC55(1)     --------->ANAC58                              <---------TOE1(3)
 --------->ANAC55(2)  <---------REM1(2)     <-----------GT1            <---------YAB1
 <---------ANAC58<---------CCA1(2)    <---------ZAT6               <---------DAG2--------->WRKY18(1)
-------DOF2--------->WOX13(1)   <----------DOF2     <----------DOF2<----------DOF2<---------WRKY38(1)
 
ttttccgtgtctatcaatccatctcttcacgccctcttttagtgatataacttatctttttcaatttgggctttatggtaatgggtcaaggcccattaag  12063200
                                                  --------->ATHB12
                                                <---------------AGL15
                  <---------WOX13(1)            --------------->AGL15
                --------->ATHB12               <-----------------AGL3                    *TSS
               <---------YAB1                  <-----------------AGL2             <---------CCA1(2)
  <---------ANAC46<---------YAB1        <-----------GT1                    ----------->HVH21    <---
 
gggtctcgtttagaactcttgattaatgtctgaaataagttttatacatttcttcatttggagagtcatttcgcagagacgacgcatagcttcttcactt  12063300
                                                        ------>ZmHOX2a(2)
                                                       --------->GLK1(1)
                                                       <------ZmHOX2a(2)
                                                       <---------GLK1(1)
                                                      --------->ARR14(2)
                                                      <---------ARR11(3)
                                                      <---------AGP1
                                                      <---------ARR11(1)
                                                      <---------ARR14(2)
                                                     <---------CCA1(2)
--------->At4g35610               <---------At4g35610<---------ARR14(1)
<---------ZAT2   <---------At4g35610                --------->LBD16
--------->ZAT2   ----------->RAV1(2)              <---------LBD16
<---------At4g35610        <-----------GT1   <---------HSFB2a(2)      <---------At4g35610       <<<<
--------HVH21    --------->At4g35610         --------->HSFB2a(2)   ---------->DOF2<----------DOF2
 
gtcagctctcaacgtttctcacctgaaatttcacttctgcttcgtcttctcgagccggatctctaatttgtaaagctccctctctctttcttcttgttct  12063400
                                                   <-------GAMYB
                         <---------MYB52(1)        <---------At4g35610
                       ----------->GT1             --------->At4g35610
                       ------>ZmHOX2a(2)          --------->MYB52(2)
           --------->ZAT14        --------------->AGL15
           <---------REM1(2)      <---------------AGL15                                     <-------
       =======================HOX2a_HOX2a     <---------ANAC46                              <-------
       ------>ZmHOX2a(1)<-------GAMYB   <---------TOE2(3)                    --------->ARR14(2)
  ---------->ID1  <---------WOX13(1)    <---------TOE1(3)                    <---------ARR14(2) ----
<<<<<TBF1  <---------ZAT14       <-----------------AGL2          <---------ZAT6        <----------DOF2
 
tcttcgtctccttctacactgatggatcgttatttagctatttagggttttgtgagttgcattaactagagtaactcgcgaattcttctcctttgccttg  12063500
                                                   <---------LBD16
                                                   --------->LBD16
               <---------At4g35610                <---------ANAC58
               --------->At4g35610                <---------ANAC46                                 -
  <---------LBD16                              --------->ARR14(2)          ------->TEIL            -
--ANAC58 --------->AHL20(2)      ------------>CBF <---------ANAC58       <---------ZAT18           -
--ANAC58 <---------AHL20(2) *TSS<-----------GT1------->TEIL    <---------ANAC55(2)               <<<
------------->AGL1  <-----------HVH21          <---------ARR14(2)   <------------CBF             <--
 
cgatttggggaattttttagctccatcagccaattttacaattttgtatgtatccgtggatttatcacatgaattgtggacctctgagtttttttttttt  12063600
        ---------->ID1             --------->AHL20(2)     <---------ANAC58
   <-------TEIL                <-------TEIL               <---------ANAC58
<------MYB46(1)            --------------->AtSPL8       <-----------GT1                   <------MYB46(1)
<------MYB83               <---------------AtSPL8   --------->ATHB12                      <------MYB83
-------->MYB111(1)         <---------TOE2(3)       <---------YAB1                        --------->MYB46(2)
-------->MYB46(2)      <----------DOF2         <----------DOF2                           --------->MYB59
-------->MYB59        <---------ANAC58         <---------DAG2                   <---------AHL20(2)
<<<<<<MYB98 <----------DOF2--------->MYB59  ------>ZmHOX2a(1)  <----------DOF2<----------DOF2
-------MYB52(1)       <---------ANAC58  <-----------GT1 <---------AHL20(2) <---------AHL20(2)    <--
 
gttaggttcttctcgctttagttttgcttttaggtacataaattttcctcctttatgatttacttgctcttgggctattttcttttatttgtttggtatg  12063700
                                                                                              <-----
                                               <------MYB46(1)                       --------->ARR11(3)
                                               <------MYB83                          --------->ARR14(2)
                                             <--------P                              <---------ARR14(2)
                                            <---------ANAC46                         <---------ARR11(3)
                                           <---------MYB46(3)                    --------->YAB1
                                           --------->MYB55(2)                    <---------ICU4
                                           --------->ATHB12                     --------->ICU4<-----
                                     <<<<<<<<<<<<<<<<<LFY                ----------->GT1  <---------AtLEC2
-------ANAC46                       <---------ZAT18           <---------AHL20(2)<---------ATHB12
 
gagtatggactctagagtttagtttagtttttttttttgggcacattggttggaattagtcttgttttattctgaattgtgtaatcaatatctgcatgct  12063800
                                               <---------O2
                                               --------->O2
                                               <---------bZIP60(2)
                                               --------->TGA2(1)
                                               <---------ANAC58
                                               <---------ANAC46
                                               <---------ANAC58
                                               <---------bZIP60(1)
                                               <---------TGA2(1)
                                               --------->bZIP60(1)
                     ----------->HVH21        ----------->STF1
                   --------->ANAC55(2)       <---------TGA2(2)
             --------->ICU4                 ----------->TGA1                   <---------At4g35610
        --------->ANAC58   ----------->GT1<---------At4g35610                  --------->ZAT2
        --------->ANAC58<---------AtMYB61 --------->At4g35610                  --------->At4g35610
----ANAC58  <---------GLK1(1)       <---------TOE2(3)                       <---------At4g35610
----ANAC58  --------->GLK1(1)    <---------AHL20(2)           <---------AHL20(2)
 
tgtggtgatgcagggaattcttatgtgatggtgtaatttaagttaagatgacgtcttcttcgcataatattgagttggaagcagctaagtttctgcataa  12063900
                                           <----------DOF2     --------->REM1(1)
                                           <---------------AGL15
                      --------->TOE1(2)    --------------->AGL15
                    ------->TEIL           <---------DAG2   <---------ANAC58
            ---------->DOF2          <---------MYB52(2)     <---------ANAC58     <---------AHL20(2)
        --------->GLK1(2)       --------->ANAC58       <-----------RAV1(1)  ------->TEIL
       <---------GLK1(2)        --------->ANAC58  ----------->GT1    <---------ATHB12       --------
       <---------ARR11(3) ---------->DOF2 <-----------------AGL3  <---------ALFIN1     ----------->GT1
 
acttattcaagattctaaagatgaacctgcaaagctagcaactaaactttatgtggtaatgtggcttcaccactcagtgtatgttttattttgtaatttt  12064000
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AGI:  At2g28280.1   
Description:  pseudogene, hypothetical protein
Range:  from: 12061813    to: 12063529    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At2g28290.1   
Description:  SYD (SPLAYED). similar to ATCHR12, ATP binding / DNA binding [Arabidopsis thaliana] (TAIR:AT3G06010.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71034.1); similar to hypothetical protein OsI_021625 [Oryza sativa (indica cultivar-group)] (GB:EAZ00393.1); similar to putative STH1 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45237.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain Helicase/SANT-associated, DNA binding (InterPro:IPR014012); contains InterPro domain DEAD-like helicase, N-term
Range:  from: 12063290    to: 12080160    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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