Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  <----                                                                                                -----                                                                                                -----                                                                                   <-----------GT1 --                           <-----------GT1                                      <-----------GT1 -----  --------->ARR14(2)    --------->ANAC58                                 ------>ZmHOX2a(1)     <-----  <---------ARR14(2)    --------->ANAC46                                --------->TOE2(3)    -------- ---->LBD16             --------->ANAC58  <----------DOF2           <---------ANAC58   <----------DOF2 ----ANAC58     --------->ZAT14       ------>ZmHOX2a(1)             <---------ANAC58  <---------DAG2 ----ANAC58<---------YAB1<---------MYB52(2)                 <----------DOF2---------->DOF2   <-------   agcatacccgcttatcaatgtagtccaagtaacaacattcctctctttcatttcatcaaaaactttccttccgtccttaaagttactacctttcatatac  11793200     --------->TOE2(2)     ------->GAMYB     --------->TOE1(2)    --------->MYB46(3)   -------->P  --------->WOX13(1) -----ANAC55(2)                                                              --------->DAG2 ---->ANAC46                                                         <---------ETT(2) ---->ANAC55(1)                                                      --------->ETT(2) ----->TEIL                                                       ------->GAMYB ---->ANAC55(2)               --------->At4g35610                <------------AtMYB77           ----- --TEIL                  --------->REM1(1)                      --------->At4g35610       ---------->DOF2 ->ARR14(2)        <---------ALFIN1                             <---------At4g35610    <---------ANAC55(2) --ARR14(2)      <---------ALFIN1                           --------->AtLEC2---------->DOF2--------->DAG2   gtatcaaccagcgatgttcccacacttacatcatctaaaaacccaaactttatacactggcaatgcaactgtctaccaaaaagctcatcacataaagtag  11793300                   ---------->DOF2                                                 --------->LBD16     <----------DOF2                                                               ------>ZmHOX2a(1)    --------->TOE1(3)                                   ------->TEIL          <---------ANAC58    --------->TOE2(3)       --------->ZAT14     --------->MYB52(1)            <---------ANAC58 ---->At4g35610  <------ZmHOX2a(1)           --------->LBD16              <----------DOF2    --------   cagaaacctttaaaacagaggaaaagatagaacagtccatctccatccccaaacgatgaatattcaagaagagtctctttgcttcctgagttcgtccatc  11793400                 --------->ANAC58                 <----------DOF2             <---------AHL20(2)                 --------->ANAC58  <---------CCA1(2)                      --------->AHL20(2)             --------->ANAC58    <-----------------AGL1               --------->ZAT18             --------->ANAC58    ----------------->AGL1            <---------ANAC58            --------->DAG2   <----------DOF2   <------ZmHOX2a(1)   <---------ANAC58       <---------YAB1 ->WOX13(1)---------->DOF2<-----------GT1 ------>NtERF2            <---------ANAC46     <------ZmHOX2a(1)   acgagaaaacccaaaaagcaagcttatataactttccctatctcggccaggacttttgtcgaacaggttgtgtgcattatataaacgagaggatgataca  11793500                                           <-----------GT1                                        ---------->TaMYB80                                        --------->ARR14(2)                                        <---------ARR14(2)                                     <---------ANAC58                            --------->ANAC58                            --------->ANAC46                            --------->ANAC58 --------->ANAC46              <-------TEIL  --------->bZIP60(2)             --------->ARR14(1)      <---------ANAC46                              <------NtERF2            --------->ARR11(1)       <---------ANAC58                            --------->RAP2.6(2)            <---------GLK1(2)------->GAMYB<---------ARR14(2)                     --------->ETT(2)    --------->ANAC58      <---------ATERF1(1)--------->ANAC58                    <---------ETT(2)    --------->ANAC58     <---------WRKY38(1) --------->ANAC58                <---------AtMYB61  ---------->DOF2        <---------WRKY45<----------TaMYB80        ----------------->AG      <-------GAMYB   gtaccaaagcaatagattcgaacttgggcaacgccatttgcgtatatacgaaacttgggtttgaaattttccaaagatggaggtcgccatattgtcgttg  11793600                                                                                          <----------                                 <------MYB83                                           --------->AHL20(2)                                 <------MYB46(1)                                        <---------AHL20(2)           <----------DOF2      <---------AtMYB61                             ------>ZmHOX2a(1)          <---------ANAC58   <-----------RAV1(1)                    <-----------GT1  --------->AHL20(2)          <---------ANAC58 <----------DOF2                      <-----------TBP      --------->YAB1   tgaatcgcatttgcttttcaagataaaaactttgttggtgttttcaaatttttcatttgcctctgtatatatactctctccttctaataaaaaattggtg  11793700                                                                                     --------->AHL20(2)                                                                                     <---------AHL20(2)                                                         <---------AHL20(2)     --------->ANAC58                              --------->ARR11(3)         --------->AHL20(2)     --------->ANAC58                              <---------ARR11(3) ----------->GT1                --------->ANAC46    <------------CBF       --------->AHL20(2)   --------->DAG2             <---------MYB52(2) --CBF                     <---------AHL20(2)  ---------->DOF2 <-----------GT1--------->MYB52(1) <---   ttttcaaattgttcatttgcctctgtcattaaaatctccaacttattgaaaaagtttatttaaattatcaacttccaactaaacgaaataaatatcaaac  11793800                                                                                     xxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   <---------LBD16                                                                                  <---------DOF5.7(2)                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                                 <---------REM1(2)                                                                                --------->DOF5.7(2)                                                                                <-----------HVH21                                                                              <---------ANAC58                                                                              <---------ANAC58                                                                              <---------ANAC46                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                          <---------------AGL15           <------------CBF                                          --------------->AGL15           xxxxxxxxxxxxxxxx>smallRNA(i)                                         ----------------->AG            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                         <-----------------AG           --------->ARR11(3)                                         ============================================================                                         <-----------------AGL1       <---------TOE2(3)       <------                                         ----------------->AGL1      <-----------GT1--------->ANAC46                                         <-----------------AGL2     xxxxxxxxxxxxxxxx>smallRNA(i)                              <---------ANAC58            <xxxxxxxxxxxxxxxsmallRNA(le3)       -------                              <---------ANAC46     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <---------AHL20(2)               <---------AHL20(2)  <---------ARR14(2)    --------->YAB1 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <----------DOF2        <---------ANAC58  --------->MYB59  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------DOF2   --------->AHL20(2) <-----------TBP  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)----------->GT1   ttttgttgactttccaaataaatactaaactttcgtatatatggccatattaggcataatattaagtagattaacatattgcgttcacggagttaatttt  11793900                 <---------AHL20(2)          ----------->GT1         ------>ZmHOX2a(2)         ==================================HOX2a_HOX2a        <------ZmHOX2a(2)        ===================================HOX2a_HOX2a       --------->AGP1       <---------ARR14(2)       <---------ARR11(3)       <---------AGP1                        ---------->DOF2                  <---------AHL20(2)       --------->ARR14(2)                  --------->ANAC58                  <---------AHL20(2)------       --------->ARR11(3)              --------->YAB1                   <---------MYB59        ------ xxxxxxx>smallRNA(fl3)              <---------------AGL15            ------->GAMYB            <------ xxxxxxsmallRNA(fl3)                ================================================================= xxxxsmallRNA(fl3)      --------->TOE2(3)  --------->ANAC58         --------->MYB46(3)  <---------ARR14(2) ===================================================MADS_MADS       <---------MYB52(2)  --------->ARR14(2) ---AHL20(2)     --------->AHL20(2) ------>ZmHOX2a(1)             <-----------GT1   --------->LBD16<- -->AHL20(2)<---------MYB52(1)      --------------->AGL15   ----------->GT1  --------->AHL20(2)------   ttgttaacagatctgttaatttaaaacgttattgtttcctataacaagaaagcgacctcgttttgttataacgaccgaattaaatccccaaatccaatct  11794000              --------->YAB1            --------->ANAC58           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <---------------AGL15                                                 --------->TGA2(1)     --------------->AGL15--------->TOE2(3)                                --------->bZIP60(1) --->YAB1<---------ATHB12 --------->TOE1(3)                           --------->YAB1 --->TOE2(3)--------->AtLEC2             --------->ATHB12             <---------ICU4 ---ATHB12 --------->WOX13(1)  --------->ARR11(3)                    --------->ICU4       <---------AHL20(2) ====================MADS_MADS <---------ARR11(3)         <---------AHL20(2)         <---------MYB52(1) --------CCA1(2)         --------->ZAT6 <---------YAB1    --------->AHL20(2)  --------->MYB52(1) --->TOE1(3)--------->ANAC58  <---------CCA1(2)          --------->AHL20(2)<---------bZIP60(1)  <----   taaatctccaaatcaagcaaaattctaaccctaaatcttcatatgatttgaaattgggatttaattgagcatttatgacataacgacgttgttttattgt  11794100  Previous    Next  AGI:  At2g27610.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G13650.1); similar to hypothetical protein OsI_019519 [Oryza sativa (indica cultivar-group)] (GB:EAY98286.1); similar to Os05g0455900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055727.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22303.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 11791004    to: 11793610    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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