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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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             <---------ZAT18
          <---------MYB46(3)                                                          <---------ANAC58
          <---------DEAR3(2)                                      ------->GAMYB       <---------LBD16
        <---------MYB52(1)                                <---------ICU4              <---------ANAC46
   --------->ANAC58                                      <---------YAB1              <---------LBD16
   --------->ANAC58                                      --------->ICU4            <---------ARR14(2)
   --------->ANAC46                                   --------->TGA2(2)            --------->ARR14(2)
--------ARR14(2)                                     <-----------TGA1             <---------MYB52(1)
------->ARR14(2)                                    --------->ANAC58            <---------ANAC58
----------ARR10                                     --------->ANAC46            <---------ANAC58
------>GLK1(1)  --------->ANAC55(2)                 --------->ANAC58            <---------ANAC46
-->ANAC58 <------MYB46(1)                    ----------->GT1   --------->MYB52(1)<---------RAP2.6(3)
-->ANAC58 <------MYB83                      <---------TOE2(3)  <-----------GT1------>NtERF2
-->ANAC46<---------AtMYB61       <-----------HVH21 <-----------STF1--------->At5g28300<---------ANAC58
 
aaatccaagccgttggttcacttgatcaagcttctgtgtcatctattgatgtaaaacgtcatcatttaacggtagaaacgatgccgttttcgggtgattt  11727600
                                                     <---------DEAR3(1)
                                                    --------->ATERF1(1)
                                                    <------NtERF2
                                                  <---------DEAR3(1)
               --------->LBD16                    --------->ALFIN1
              <---------DREB2C(2)                <------NtERF2
              <---------DEAR3(1)                 --------->ATERF1(1)
              --------->ATERF1(2)               <---------ATERF1(1)
              <---------ATERF1(2)              --------->ALFIN1
         <---------ANAC58 --------->ARR14(2)   <---------DEAR3(1)
         <---------ANAC58 <---------ARR14(2)  <---------ABI4(1)
        --------->ZAT2  <---------MYB46(3)    --------->ATERF1(1)            --------->ALFIN1    <--
        <------NtERF2  <---------AtMYB61    --------->ALFIN1        <---------ARR14(2)      --------
        <---------ZAT2 --------->ALFIN1  --------->ALFIN1           --------->ARR14(2)    <---------MYB46(3)
        --------->At4g35610    <-----------RAV1(2)<---------ANAC46<---------MYB46(3)     <---------AtMYB61
        <---------At4g35610   <XXXXXXXXXXXXXXXXXXXXXMIR853       --------->ALFIN1        --------->ALFIN1
<---------ANAC58    <---------AtMYB61   <------ZmHOX2a(1)        <---------AtMYB61<------ZmHOX2a(1)
<---------ANAC58 --------->ALFIN1  --------->ALFIN1<---------ATERF1(1)   <-----------RAV1(2)<-------
 
tgtgcgtaggcagcttgccggtggaggtggttcttcaggtggaggagggggaggcggaggctctcgaggtggttcttcaggtggaggaagcagtggtgga  11727700
                                                                   --------->HSFB2a(2)
                         --------->DAG2                        <------NtERF2
                        ---------->DOF2                       <---------MYB46(3)
                 <---------ORA47(2)                           ------>NtERF2
                 <---------MYB46(3)                           --------->ABI4(2)
                <---------DREB2C(2)                          <---------DEAR3(1)
                --------->ALFIN1                             --------->ALFIN1
                <---------DEAR3(1)                       <------NtERF2
               <------NtERF2                             --------->At4g35610                <-------
               <---------ABI4(1)                         <---------At4g35610               <--------
  <---------ANAC58 --------->ALFIN1                   --------->ATERF1(1)                  ---------
  <---------ANAC58<-------GAMYB        <---------At4g35610 <---------MYB46(3)           --------->DAG2
  <---------ANAC46<------NtERF2        --------->At4g35610<---------DEAR3(1)  <---------TOE2(3) <---
----ZmHOX2a(1) --------->ATERF1(1)  <------ZmHOX2a(1) <------NtERF2<---------HSFB2a(2) --------->DAG2
->ALFIN1     <---------DEAR3(1)  <------ZmHOX2a(1)<---------MYB46(3)    <------ZmHOX2a(1)  <--------
--ANAC46  --------->ALFIN1  --------->ALFIN1     --------->ALFIN1 <---------LBD16     ---------->DOF2
 
ggaagtcgtggaagtggaggcggtggaaaaagtggaggaggaagctcaaaccgtggtggcagcggtggctctggaggaaataaggctggaaaaggtggtg  11727800
                                       --------->ALFIN1
                                       <---------ANAC46
                                 --------->ALFIN1
                         --------->MYB55(2)
                     <---------DREB2C(2)
      <---------DEAR3(1)<---------AtMYB61
      --------->ALFIN1  --------->ALFIN1<---------MYB46(3)                                        <-
      <---------ANAC46  <---------DEAR3(1)<---------YAB1                                          ==
   --------->ALFIN1  <---------ANAC46<---------MYB46(3)                                           <-
 <---------ANAC58 ----------->HVH21 --------->ALFIN1                                       <--------
 <---------ANAC58 ----------->TGA1  <---------AtMYB61                                      ---------
--MYB46(3)   --------->YAB1      <---------AtMYB61                                        --------->ANAC46
-AtMYB61    <---------YAB1 <---------ANAC46                                              <---------LBD16
>ALFIN1 <------NtERF2<---------DEAR3(1)<---------AtMYB61 <---------ZAT6                  --------->HSFB2a(2)
---NtERF2   --------->ICU4 --------->ALFIN1    <---------LBD16 --------->ZAT6<------ZmHOX2a(1)    --
-DEAR3(1)<---------ANAC46<---------MYB46(3)    --------->At4g35610      --------->ALFIN1 <---------HSFB2a(2)
 
gcagtcgtggtggcgatgatggtgacggtggtggagatggtggtggtgatagcggaagtagtggaaacactagaggtggaggacaacaagttcccgtagt  11727900
               --------->ANAC46
               --------->ANAC58
               --------->ANAC58
         <---------GLK1(1)
        --------->ARR14(2)
        <---------ARR14(2)
    <------NtERF2
    <---------At4g35610
   <---------RAP2.3(1)
   ------>NtERF2
   ----------->RAV1(1)
  <---------DEAR3(1)
  <---------ATERF1(2)
  --------->ATERF1(2)
  <---------RAP2.3(2)
 --------->RAP2.6(3)                          <---------ZAT6
--------HSFB2a(2)                             <-----------RAV1(1)
===============RAV                       <----------DOF2
----------RAV1(2)       <---------SPL7 <------------------------ANAC81
-MYB52(1)--------->GLK1(1)          <---------KAN4(1)             --------->ICU4           <--------
>LBD16  <---------GLK1(2)           --------->KAN4(1)        ----------->HVH21   <------ZmHOX2a(2)
------->HSFB2a(2)   <---------AtMYB61--------->KAN4(2)     <---------ICU4       --------->ARR11(3)
 
tccaggcggcagatttccaagcgatggtgtccgaattgaatattctttagtgttgttcatcttcatgacatgtttagttatgggatcatgttttctttag  11728000
                                                                        <---------ICU4
                                                                        -------->ATHB1
                                                                        --------->ATHB51
                                                       <---------AHL20(2)         ------>ZmHOX2a(2)
                                                       --------->AHL20(1)<------------CBF
                                                      --------->ATHB51  <--------ATHB1             -
                                                      <---------AHL20(2)--------->ATHB12           -
                                               <-------GAMYB           --------->ICU4             <-
               <-----------GT1                <---------MYB46(3)       <---------ATHB51         ----
           --------------->AtSPL8             --------->MYB52(2)       <---------YAB1           <---
       <---------AHL20(2)            <----------DOF2  --------->AHL20(2)--------->YAB1      >>>>>>>>
      --------->AHL20(2)           =================================================================
--DOF2<---------AHL20(2)           --------------->AGL15           ------------>CBF      -----------
 
actccaaattttaatttgtaacctatttctctctctctctctttttagtttgttgaattattttgtttaatacaattattgctgatcggttttggttaat  11728100
                                                           --------->ANAC46
                                                           --------->ANAC58
                                                           --------->O2
                             <---------REM1(1)             <---------O2
                          --------->MYB52(2)               --------->bZIP60(2)
                         <---------------AGL15             <---------TGA1a
                         --------------->AGL15             --------->TGA1a
                     <-------TEIL                          --------->ANAC58
                    --------->CCA1(2)                    <---------ALFIN1
                    --------->ARR14(1)              <-------TEIL
-------->YAB1      <---------GLK1(2)             <---------ANAC58
------->HAHB4      --------->ARR14(2)            <---------ANAC58
--------YAB1       --------->ARR11(1)            <---------ANAC46
----->YAB1 <---------At4g35610               --------------------->WRI1
------ICU4 --------->At4g35610              <---------ANAC58                    <-----------GT1
>GT-1     ------->TEIL  <---------MYB52(1)  <---------ANAC46              ------>ZmHOX2a(1)
=========================================MADS_MADS --------->ALFIN1     ------>ZmHOX2a(2)
>GT1  ------->TEIL <---------ARR14(2)       <---------ANAC58          <---------ARR11(3)     -------
 
aataatacgaacgtagctcaaagattcgctagttgtagtaatacattccttggggtgcatccacgtctctcttgatcctcatgaaaccattttctcccca  11728200
                                                                                                 <--
                                                         <---------At5g28300                     ---
                                                        --------->ARR14(2)                       ---
                                                ------>MYB83                                     <--
                                                ------>MYB46(1)                                  <--
                                               ----------->RAV1(1)                               ---
                                              ------->GAMYB------->GAMYB                        <---
                                        --------->YAB1  <-----------GT1            <---------GLK1(2)
          ------>MYB83             <---------ICU4--------->MYB46(3)     --------->ARR14(2)      <---
     <-----------GT1              <---------ATHB12   --------->YAB1     --------->GLK1(2)  <--------
-->LBD16  ------>MYB46(1)     --------->ZAT14--------->MYB46(3)         <---------ARR14(2)<-------GAMYB
 
agaattcttcaccatccaatacttagttccttcttcactcatttcataaccaacaattgtaaccgcatgatgcaaaatccgtctcacattctccgttgaa  11728300
                                <---------ZAT18
                              <-----------HVH21
                             ------>ZmHOX2a(1)
                           ----------->RAV1(2)
      --------->LBD16    --------->ARR14(2)
     --------->LBD16     <---------ARR14(2)                                               <---------YAB1
---------GT1            --------->At4g35610                                               --------->ICU4
------>ARR11(3)         <---------ZAT2                                                  <---------ICU4
------>KAN4(2)          --------->ZAT2                                                 ------>ZmHOX2a(1)
-------ARR14(2)         <---------At4g35610                                            <xxxxxxxxxxxx
-------ARR11(3)        ------->TEIL                                            ------>MYB46(1)
------>ARR14(2)     --------->ANAC58                                           ------>MYB83<--------
------KAN4(1)       --------->ANAC46                                         --------->AtMYB61
------GLK1(1)       --------->ANAC58                             <---------ALFIN1     --------->TOE2(3)
-MYB52(1)         ---------->DOF2                      <------ZmHOX2a(1)    --------->DEAR3(2) -----
 
tatccctcccgagtagtgcctaaacgcagctcctgtcccctctatccccatggaaacaggatgttgagacaccgcttgtaccaacgcttcctcattattc  11728400
                                                                         <---------WRKY45
                                                       ---------->ID1    <---------WRKY12
                                                      <-----------GT1    <---------WRKY38(1)
 *TSS                                         --------->YAB1    <---------------AGL15
xxxxxxxxsmallRNA(se3)                        <---------YAB1     --------------->AGL15
-ICU4  ------->TEIL        --------->DAG2  --------->YAB1      --------->ZAT6               <-------
---->ATHB12               ---------->DOF2 --------->ICU4<-----------GT1<-----------HVH21   ---------
 
atttgccatgaattttgaaatatagttcaaaaaggcctacttggaattatcatattttttccccttactctatttgtcaacgcttgagtctaacttattg  11728500
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AGI:  At2g27390.1   
Description:  proline-rich family protein. contains InterPro domain Pistil-specific extensin-like protein; (InterPro:IPR003882)
Range:  from: 11727562    to: 11727966    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At2g27395.1   
Description:  pseudogene of cysteine protease-related
Range:  from: 11728129    to: 11728402    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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