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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ZAT18
<---------
MYB46(3)
<---------
ANAC58
<---------
DEAR3(2)
------->
GAMYB
<---------
LBD16
<---------
MYB52(1)
<---------
ICU4
<---------
ANAC46
--------->
ANAC58
<---------
YAB1
<---------
LBD16
--------->
ANAC58
--------->
ICU4
<---------
ARR14(2)
--------->
ANAC46
--------->
TGA2(2)
--------->
ARR14(2)
--------
ARR14(2)
<-----------
TGA1
<---------
MYB52(1)
------->
ARR14(2)
--------->
ANAC58
<---------
ANAC58
----------
ARR10
--------->
ANAC46
<---------
ANAC58
------>
GLK1(1)
--------->
ANAC55(2)
--------->
ANAC58
<---------
ANAC46
-->
ANAC58
<------
MYB46(1)
----------->
GT1
--------->
MYB52(1)
<---------
RAP2.6(3)
-->
ANAC58
<------
MYB83
<---------
TOE2(3)
<-----------
GT1
------>
NtERF2
-->
ANAC46
<---------
AtMYB61
<-----------
HVH21
<-----------
STF1
--------->
At5g28300
<---------
ANAC58
aaatccaagccgttggttcacttgatcaagcttctgtgtcatctattgatgtaaaacgtca
tcatttaacggtagaaacgatgccgttttcgggtgattt
11727600
<---------
DEAR3(1)
--------->
ATERF1(1)
<------
NtERF2
<---------
DEAR3(1)
--------->
LBD16
--------->
ALFIN1
<---------
DREB2C(2)
<------
NtERF2
<---------
DEAR3(1)
--------->
ATERF1(1)
--------->
ATERF1(2)
<---------
ATERF1(1)
<---------
ATERF1(2)
--------->
ALFIN1
<---------
ANAC58
--------->
ARR14(2)
<---------
DEAR3(1)
<---------
ANAC58
<---------
ARR14(2)
<---------
ABI4(1)
--------->
ZAT2
<---------
MYB46(3)
--------->
ATERF1(1)
--------->
ALFIN1
<--
<------
NtERF2
<---------
AtMYB61
--------->
ALFIN1
<---------
ARR14(2)
--------
<---------
ZAT2
--------->
ALFIN1
--------->
ALFIN1
--------->
ARR14(2)
<---------
MYB46(3)
--------->
At4g35610
<-----------
RAV1(2)
<---------
ANAC46
<---------
MYB46(3)
<---------
AtMYB61
<---------
At4g35610
<XXXXXXXXXXXXXXXXXXXXX
MIR853
--------->
ALFIN1
--------->
ALFIN1
<---------
ANAC58
<---------
AtMYB61
<------
ZmHOX2a(1)
<---------
AtMYB61
<------
ZmHOX2a(1)
<---------
ANAC58
--------->
ALFIN1
--------->
ALFIN1
<---------
ATERF1(1)
<-----------
RAV1(2)
<-------
tgtgcgtaggcagcttgccggtggaggtggttcttcaggtggaggagggggaggcggaggctctcgaggtggttcttcaggtggaggaagcagtggtgga
11727700
--------->
HSFB2a(2)
--------->
DAG2
<------
NtERF2
---------->
DOF2
<---------
MYB46(3)
<---------
ORA47(2)
------>
NtERF2
<---------
MYB46(3)
--------->
ABI4(2)
<---------
DREB2C(2)
<---------
DEAR3(1)
--------->
ALFIN1
--------->
ALFIN1
<---------
DEAR3(1)
<------
NtERF2
<------
NtERF2
--------->
At4g35610
<-------
<---------
ABI4(1)
<---------
At4g35610
<--------
<---------
ANAC58
--------->
ALFIN1
--------->
ATERF1(1)
---------
<---------
ANAC58
<-------
GAMYB
<---------
At4g35610
<---------
MYB46(3)
--------->
DAG2
<---------
ANAC46
<------
NtERF2
--------->
At4g35610
<---------
DEAR3(1)
<---------
TOE2(3)
<---
----
ZmHOX2a(1)
--------->
ATERF1(1)
<------
ZmHOX2a(1)
<------
NtERF2
<---------
HSFB2a(2)
--------->
DAG2
->
ALFIN1
<---------
DEAR3(1)
<------
ZmHOX2a(1)
<---------
MYB46(3)
<------
ZmHOX2a(1)
<--------
--
ANAC46
--------->
ALFIN1
--------->
ALFIN1
--------->
ALFIN1
<---------
LBD16
---------->
DOF2
ggaagtcgtggaagtggaggcggtggaaaaagtggaggaggaagctcaaaccgtggtggcagcggtggctctggaggaaataaggctggaaaaggtggtg
11727800
--------->
ALFIN1
<---------
ANAC46
--------->
ALFIN1
--------->
MYB55(2)
<---------
DREB2C(2)
<---------
DEAR3(1)
<---------
AtMYB61
--------->
ALFIN1
--------->
ALFIN1
<---------
MYB46(3)
<-
<---------
ANAC46
<---------
DEAR3(1)
<---------
YAB1
==
--------->
ALFIN1
<---------
ANAC46
<---------
MYB46(3)
<-
<---------
ANAC58
----------->
HVH21
--------->
ALFIN1
<--------
<---------
ANAC58
----------->
TGA1
<---------
AtMYB61
---------
--
MYB46(3)
--------->
YAB1
<---------
AtMYB61
--------->
ANAC46
-
AtMYB61
<---------
YAB1
<---------
ANAC46
<---------
LBD16
>
ALFIN1
<------
NtERF2
<---------
DEAR3(1)
<---------
AtMYB61
<---------
ZAT6
--------->
HSFB2a(2)
---
NtERF2
--------->
ICU4
--------->
ALFIN1
<---------
LBD16
--------->
ZAT6
<------
ZmHOX2a(1)
--
-
DEAR3(1)
<---------
ANAC46
<---------
MYB46(3)
--------->
At4g35610
--------->
ALFIN1
<---------
HSFB2a(2)
gcagtcgtggtggcgatgatggtgacggtggtggagatggtggtggtgatagcggaagtagtggaaacactagaggtggaggacaacaagttcccgtagt
11727900
--------->
ANAC46
--------->
ANAC58
--------->
ANAC58
<---------
GLK1(1)
--------->
ARR14(2)
<---------
ARR14(2)
<------
NtERF2
<---------
At4g35610
<---------
RAP2.3(1)
------>
NtERF2
----------->
RAV1(1)
<---------
DEAR3(1)
<---------
ATERF1(2)
--------->
ATERF1(2)
<---------
RAP2.3(2)
--------->
RAP2.6(3)
<---------
ZAT6
--------
HSFB2a(2)
<-----------
RAV1(1)
===============
RAV
<----------
DOF2
----------
RAV1(2)
<---------
SPL7
<------------------------
ANAC81
-
MYB52(1)
--------->
GLK1(1)
<---------
KAN4(1)
--------->
ICU4
<--------
>
LBD16
<---------
GLK1(2)
--------->
KAN4(1)
----------->
HVH21
<------
ZmHOX2a(2)
------->
HSFB2a(2)
<---------
AtMYB61
--------->
KAN4(2)
<---------
ICU4
--------->
ARR11(3)
tccaggcggcagatttccaagcgatggtgtccgaattgaatattctttagtgttgttcatcttcat
gacatgtttagttatgggatcatgttttctttag
11728000
<---------
ICU4
-------->
ATHB1
--------->
ATHB51
<---------
AHL20(2)
------>
ZmHOX2a(2)
--------->
AHL20(1)
<------------
CBF
--------->
ATHB51
<--------
ATHB1
-
<---------
AHL20(2)
--------->
ATHB12
-
<-------
GAMYB
--------->
ICU4
<-
<-----------
GT1
<---------
MYB46(3)
<---------
ATHB51
----
--------------->
AtSPL8
--------->
MYB52(2)
<---------
YAB1
<---
<---------
AHL20(2)
<----------
DOF2
--------->
AHL20(2)
--------->
YAB1
>>>>>>>>
--------->
AHL20(2)
=================================================================
--
DOF2
<---------
AHL20(2)
--------------->
AGL15
------------>
CBF
-----------
actccaaattttaatttgtaacctatttctctctctctctctttttagtttgttgaattattttgtttaatacaattattgctgatcggttttggttaat
11728100
--------->
ANAC46
--------->
ANAC58
--------->
O2
<---------
REM1(1)
<---------
O2
--------->
MYB52(2)
--------->
bZIP60(2)
<---------------
AGL15
<---------
TGA1a
--------------->
AGL15
--------->
TGA1a
<-------
TEIL
--------->
ANAC58
--------->
CCA1(2)
<---------
ALFIN1
--------->
ARR14(1)
<-------
TEIL
-------->
YAB1
<---------
GLK1(2)
<---------
ANAC58
------->
HAHB4
--------->
ARR14(2)
<---------
ANAC58
--------
YAB1
--------->
ARR11(1)
<---------
ANAC46
----->
YAB1
<---------
At4g35610
--------------------->
WRI1
------
ICU4
--------->
At4g35610
<---------
ANAC58
<-----------
GT1
>
GT-1
------->
TEIL
<---------
MYB52(1)
<---------
ANAC46
------>
ZmHOX2a(1)
=========================================
MADS_MADS
--------->
ALFIN1
------>
ZmHOX2a(2)
>
GT1
------->
TEIL
<---------
ARR14(2)
<---------
ANAC58
<---------
ARR11(3)
-------
aataatacgaacgtagctcaaagattcg
ctagttgtagtaatacattccttggggtgcatccacgtctctcttgatcctcatgaaaccattttctcccca
11728200
<--
<---------
At5g28300
---
--------->
ARR14(2)
---
------>
MYB83
<--
------>
MYB46(1)
<--
----------->
RAV1(1)
---
------->
GAMYB
------->
GAMYB
<---
--------->
YAB1
<-----------
GT1
<---------
GLK1(2)
------>
MYB83
<---------
ICU4
--------->
MYB46(3)
--------->
ARR14(2)
<---
<-----------
GT1
<---------
ATHB12
--------->
YAB1
--------->
GLK1(2)
<--------
-->
LBD16
------>
MYB46(1)
--------->
ZAT14
--------->
MYB46(3)
<---------
ARR14(2)
<-------
GAMYB
agaattcttcaccatccaatacttagttccttcttcactcatttcataaccaacaattgtaaccgcatgatgcaaaatccgtctcacattctccgttgaa
11728300
<---------
ZAT18
<-----------
HVH21
------>
ZmHOX2a(1)
----------->
RAV1(2)
--------->
LBD16
--------->
ARR14(2)
--------->
LBD16
<---------
ARR14(2)
<---------
YAB1
---------
GT1
--------->
At4g35610
--------->
ICU4
------>
ARR11(3)
<---------
ZAT2
<---------
ICU4
------>
KAN4(2)
--------->
ZAT2
------>
ZmHOX2a(1)
-------
ARR14(2)
<---------
At4g35610
<xxxxxxxxxxxx
-------
ARR11(3)
------->
TEIL
------>
MYB46(1)
------>
ARR14(2)
--------->
ANAC58
------>
MYB83
<--------
------
KAN4(1)
--------->
ANAC46
--------->
AtMYB61
------
GLK1(1)
--------->
ANAC58
<---------
ALFIN1
--------->
TOE2(3)
-
MYB52(1)
---------->
DOF2
<------
ZmHOX2a(1)
--------->
DEAR3(2)
-----
tatccctcccgagtagtgcctaaacgcagctcctgtcccctctatccccatggaaacaggatgttgagacaccgcttgtaccaacgcttcctcattattc
11728400
<---------
WRKY45
---------->
ID1
<---------
WRKY12
<-----------
GT1
<---------
WRKY38(1)
*
TSS
--------->
YAB1
<---------------
AGL15
xxxxxxxx
smallRNA(se3)
<---------
YAB1
--------------->
AGL15
-
ICU4
------->
TEIL
--------->
DAG2
--------->
YAB1
--------->
ZAT6
<-------
---->
ATHB12
---------->
DOF2
--------->
ICU4
<-----------
GT1
<-----------
HVH21
---------
at
ttgccatgaattttgaaatatagttcaaaaaggcctacttggaattatcatattttttccccttactctatttgtcaacgcttgagtctaacttattg
11728500
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AGI:
At2g27390.1
Description:
proline-rich family protein. contains InterPro domain Pistil-specific extensin-like protein; (InterPro:IPR003882)
Range:
from: 11727562
to: 11727966
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At2g27395.1
Description:
pseudogene of cysteine protease-related
Range:
from: 11728129
to: 11728402
Orientation: Reverse
Links:
TAIR
MIPS
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when using AthaMap.
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