AthaMap TU-Logo
Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
      <---------At4g35610                                   --------->ANAC46
      --------->At4g35610                                  ---------->DOF2
  <----------DOF2                                   ------>MYB83
-------ARR11(3)                --------->YAB1       ------>MYB46(1)
------>ARR11(3)           --------->AHL20(2)       --------->MYB52(1)           <---------ICU4 <----
--->DOF2           ----------->GT1                --------->AtMYB61--------->ZAT14      <-------TEIL
 
gttctctttagctccctataaccagaaaaaaaaatcatatttagaaataaacaccaacgatacaaagcactacattcaaacacttatggcatacataagt  10894600
                                        --------->ZAT6
                                     <---------ZAT14
                                     --------->ZAT18
                             --------->ATHB12
              <------ZmHOX2a(1)      --------->ZAT14
              =====================HOX2a_HOX2a                                 <---------ALFIN1
         ==========================HOX2a_HOX2a                      <---------AHL20(2)          ----
   ----------->RAV1(2)      <------ZmHOX2a(2)                     --------->TOE2(3) <----------DOF2
-----ZAT6<------ZmHOX2a(1)  <---------YAB1                        <----------DOF2   ------>ZmHOX2a(1)
 
gttataccctgaggagaggaataagacgacgatcattgagttcacagtaatcgataactctctctacttctttaatcgcgctccatcctttggctacata  10894700
                                                                      --------->ARR14(2)
                                                           --------->TOE2(3)
                                                          ----------->GT1
                                                          --------->ANAC58
                                                          --------->ANAC58                        --
         <---------YAB1                               <---------MYB52(2) ----------->GT1         ---
    <---------ANAC58                       --------->TOE1(3)          <---------ARR14(2)         <--
    <---------ANAC58         ------>ZmHOX2a(1)   --------->ANAC46  --------->ANAC46           ------
----->ANAC46    ------>ZmHOX2a(1)          --------->TOE2(3) ---------->DOF2                 <------
 
ctccattgccttctcattcctactgtgtaatcctctctgattcaaaccataaacaccacaaacgtaaatcacagaaccgaaacaaactcatttccaatcg  10894800
                                                                                    --------->At4g35610
                                                                                    <---------At4g35610
                                                                                    <---------ZAT2
                                                                                    <------NtERF2
                                                                                    <-------GAMYB
                                                                                    --------->ATERF1(1)
                                                                                   ------>NtERF2
                                                                                   <---------RAP2.6(1)
                                                                                   <---------RAP2.3(1)
                                                                                   <---------DEAR3(2)
                                                                                   <---------MYB46(3)
                                                                                   <---------ERF1
                                                                                   <---------ATERF1(1)
                                                                                   <---------RRTF1(1)
                                                                                  <---------RAP2.6(2)
                                                                                  <---------RAP2.3(3)
                                                                                  <---------DEAR3(1)
                                                                                  <---------RAP2.3(2)
                                                                                 --------->ATERF1(1)
                                                                                 <------NtERF2
                                                                                ------>NtERF2
                                                                                <---------DEAR4(2)
                                                                                <---------ERF1
                                                                                <---------RRTF1(1)
                                                                                <---------RAP2.3(1)
                                                                                <---------ATERF1(1)
                                                                               <---------RAP2.3(2)
                                                                               <---------O2
                                                                               --------->O2
                                                                               <---------DEAR3(1)
                                                                              <------NtERF2
                                                                              --------->ATERF1(1)
                                                                             <---------ATERF1(1)
                                                                             ------>NtERF2
                                                                            --------->DEAR3(1)
                                                                            ----------->HVH21
                                                                            <---------DEAR3(1)
                                                                           ------>NtERF2
                                                                           --------->ATERF1(1)
                                                                           <------NtERF2
                                                                           --------->RAP2.3(1)
                                                                          <---------ATERF1(1)
                                                                          ------>NtERF2        <----
                                                                          --------->LBD16     ------
       --------->DAG2                                                    <---------DEAR3(1)  <------
      ---------->DOF2                                                   --------->LBD16  <----------DOF2
  <---------------AGL15                                                <---------ANAC58 <---------ANAC58
 --------------->AGL15                             <---------YAB1      <---------ANAC58 <---------ANAC58
----------------->AGL3                           --------->YAB1       <---------LBD16  --------->At4g35610
------->ARR14(2)                                <---------YAB1      --------->ARR14(2) --------->ZAT2
------>GLK1(1)                             --------->ZAT6           <---------ARR14(2) <---------ZAT2
-------GLK1(1)                         --------->AtLEC2 --------->ANAC58<---------At4g35610  -------
--->YAB1----------->GT1           <---------ARR14(2)    --------->ANAC46--------->At4g35610 <-------
---ATHB12                         --------->ARR14(2)    --------->ANAC58<---------LBD16<---------At4g35610
 
aaatccacaaaaaggaaaatgtcatactcgctgttcgaatccatgaacagtatgatgacaagcaatcttcgattccgcggcgacggcggctgcttgccgg  10894900
                                                                                                  *TSS
                                                                                                 ---
                                                                                                 ---
        --------->ANAC58                                                                 <---------DAG2
     <----------ID1                       --------->LBD16                                <----------DOF2
 <---------AHL20(2)                   ------>MYB46(1)                                   <---------ANAC58
 --------->AHL20(2)    <---------LBD16------>MYB83                                      <---------ANAC58
--NtERF2--------->ANAC58  <------NtERF2-------->P--------->GLK1(2)                      <---------ANAC46
--->LBD16       --------->ATHB12      --------->MYB52(1)       --------->TOE2(3)  <---------TOE2(3)
---ANAC46      <---------YAB1       <---------MYB59            --------->TOE1(3) ---------->DOF2>>>>
-->ETT(1)    --------->YAB1         --------->AtMYB61<---------YAB1           <---------At4g35610<--
--LBD16 --------->ANAC46 --------->LBD16<---------LBD16---------->DOF2        --------->At4g35610<--
 
agaattaaacgacgaaacatgatttagccggagaagaaacctaaccggagagaattttgaaagaaaccttcaactaggcttagctaaagttgctttttag  10895000
       <---------AHL20(2)
       --------->AHL20(2)
------>ZAT18                              <-----------GT1
------>ZAT14           ---------->DOF2--------->AHL20(2)                              --------->KAN4(1)
>>>>>>>>>>>>>LFY    ----------->TBP--------->YAB1                              <-----------HVH21  --
-------ZAT18  --------->ANAC58    <---------YAB1                         --------->ARR11(3)*TSS <---
-------ZAT14  --------->ANAC58  --------->YAB1  <----------DOF2<---------DEAR3(1)    <---------KAN4(2)
 
tccactgtattttattcaagcccatataaagcccattatcataaattacaactttcccctcgagcgtcgatgctaagttctcggtcggattattcaagtt  10895100
          --------->ANAC58
          --------->ANAC58
          --------->ANAC46                  --------->GLK1(2)
    <------NtERF2                          <---------GLK1(2)
   ------>NtERF2                           --------->ARR14(2)
   <-----------HVH21                       <---------ARR14(2)
  --------->DEAR3(1)                ------>MYB46(1)
  --------->RAP2.3(3)             <---------MYB59
 --------->ATERF1(1)          <---------ETT(1)                                             <--------
 <------NtERF2             --------->ARR14(2)                                              ---------
 --------->RAP2.3(1)       <---------ARR14(2)                                     --------->ANAC46
<---------RAP2.3(1) ------>MYB46(1) --------->MYB52(1)                      <---------ANAC46
------>NtERF2       ------>MYB83  --------->AtMYB61                 <----------DOF2        ---------
-------->ID1       ----------->RAV1(1)     <---------GLK1(1)      <---------At4g35610     --------->ICU4
--------RAV1(1)   --------->AtMYB61 ------>MYB83        <----------DOF2<---------At4g35610<---------YAB1
 
tgtcgccgtcaaaacgaaacaccaacacaagttccgaccaaactgggattctgttatcactttggtctctgctcttctgatgtatacgaagttatcattg  10895200
                                                                             --------->At4g35610
                                                                             <-------GAMYB
                                                                            <---------MYB46(3)
                                                                        --------->ANAC46
                                                                        --------->ANAC58
                                                                        --------->ANAC58
                                                                      <---------AtLEC2
                                                                      <---------ALFIN1
                                               --------->WOX13(1)    <---------ZAT14
                                              ======================HOX2a_HOX2a
                                              ------>ZmHOX2a(2)      --------->ZAT14
                                              <-------TEIL           <---------REM1(2)
    ---------->DOF2                          <------ZmHOX2a(2) --------->GLK1(2)
  --------->LBD16                            =======================HOX2a_HOX2a
<---------LBD16                             --------->ARR14(2)--------->ARR14(2)          --------->ARR11(3)
--------->LBD16    <---------ZAT14          <---------ARR14(2)<---------GLK1(2)           <---------GLK1(2)
-ICU4              --------->ZAT14         <------ZmHOX2a(1)  <---------ARR14(2)        ----------->ARR10
>ATHB12   <---------ARR11(3)           ---------->DOF2       <------ZmHOX2a(1)      ----------->GT1
>YAB1     --------->ARR11(3)    --------->MYB52(1)         <---------TOE2(3)--------->MYB55(2)
 
ttccccagaaagagttcttcactactctccatagccaacgagaaaaggatccatcaatttctgaggaatctctgcacggctgttgaaaggttagattttg  10895300
                                                                    --------->At4g35610
                                                                    <---------ZAT2
                                                                    --------->ZAT2
                                                             <---------ZAT2
                                                            ------>MYB46(1)
                                                            ------>MYB83
            <-----------HVH21                             <---------MYB59
       -------->HAHB4                                  --------->ARR14(2)
       <--------ATHB1                                  <---------ARR14(2)--------->LBD16
       <---------ICU4                               <---------HSFB2a(2)  <---------LBD16
       --------->ATHB12                          ------->TEIL--------->ZAT2
      --------->ICU4                             <XXXXXXXXXXXXXXXXXXXXMIR826        <---------ZAT6
      <---------YAB1                             <---------ARR14(2) --------->GLK1(1)             --
      <---------ATHB12                           --------->GLK1(2)  <---------At4g35610           --
     <---------TOE2(3)                           --------->ARR14(2) <---------GLK1(1)             --
    --------->YAB1     ------->TEIL----------->GT1  --------->HSFB2a(2)<---------LBD16---------->DOF2
 
gaaactctaatgattcgtcagaaatgaaccctagagaagggtataatggacgaatccagaaccgaactgggagctctggggaagttagtgaaagtattca  10895400
          --------->GLK1(2)              <---------RAP2.6(3)
         <---------GLK1(2)               <-----------HVH21
 ---------->DOF2                      --------->At4g35610
------->ANAC58                   --------->CCA1(2)         ------>ZmHOX2a(1)
------->ANAC46                --------->ANAC58    --------->At4g35610                --------->TOE2(3)
------->ANAC58                --------->ANAC58    <---------At4g35610                --------->YAB1
 
cacacaaagtcagagtctgggttcgaatcagggaagaaatgagcagtcatggaagcagagtcctagtttgtctaattctcaagtccaatctcaatatcaa  10895500
<- Previous    Next ->

AGI:  At2g25570.1   
Description:  binding. similar to Os02g0202600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046232.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65643.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Sel1-like (InterPro:IPR006597)
Range:  from: 10892776    to: 10894999    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At2g25580.1   
Description:  binding. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G32450.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44189.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:  from: 10895092    to: 10897445    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

    printer-friendly version