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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                     <----------ID1                                        ---------
                                     ----------->GT1                                    <---------ICU4
   ----------->GT1               ---------->DOF2                                     --------->YAB1
  --------->ATHB12            --------->TOE2(3)                                      --------->AHL20(2)
---ZAT14                      --------->TOE1(3)                       <------ZmHOX2a(1)--------->ICU4
-->ZAT14                      <----------DOF2   ---------->DOF2   --------->TOE1(2) <---------AHL20(2)
 
ctgaatgagtgaaatagtcagttctaatataaactttaaagcgcaaaaactaaaagagaacgagaagaaactaggacagacttctaaataatatttataa  10064200
                                            <---------MYB52(1)
                                           <----------DOF2
                                          <---------ANAC58
                                 --------->HSFB2a(2)   --------->AHL20(2)
                                 <---------HSFB2a(2)   <---------AHL20(2)
                               --------->At4g35610    <---------AHL20(2)                 <---------AHL20(2)
                               ----------->RAV1(2)    --------->AHL20(2)              ----------->GT1
                    <----------ID1        <---------ANAC46                  <----------ID1         -
>YAB1               ----------->GT1       <---------ANAC58  <-----------GT1 ----------->GT1  <------
 
actcgttcaagagattagagaaaacgaaaaaatcatctggaaattgcgttaagttgattaaattcacacattttgtaatgggtcaaaacgagttaattag  10064300
                    --------->bZIP60(2)                                      <---------------------WRI1
           <--------HAHB4                                                <-----------TGA1
           --------->YAB1       <-----------GT1                          <-----------HVH21
          <---------AHL20(2) --------->ARR14(2)              --------->HSFB2a(2)
  <----------DOF2   --------->ANAC58                 ---------->DOF2    --------->ANAC46
  <---------DAG2    --------->ANAC58          --------->SPL7 ------>ZmHOX2a(1)
----->ZmHOX2a(1)    --------->ANAC46     --------->ANAC46    <---------HSFB2a(2)          --------->STY1(2)
---ICU4   <---------YAB1 <---------At4g35610 --------->MYB52(1)     <-----------GT1     ------>ZmHOX2a(1)
 
tcctactttttctataattatccaagtcatcagatttactatccaagcgaacgaactaaagctcctcgaatttactcgtcatcgaatagtcctagctaca  10064400
                                                                                  <---------DAG2
                                                                                  --------->TOE2(3)
                                                                        --------->TGA2(2)
                                                                       <-----------HVH21
                                                                      --------->ANAC58
                                                                      --------->ANAC46
                                                                      ========================MYC_MYB
                                                                      --------->ANAC55(1)
                                                                      <---------TGA1a
                                                                      --------->bZIP60(2)   <-------
                                                      <---------ATHB12--------->TGA1a       <-------
                                                    --------->WOX13(1)--------->ANAC58      <-------
                                                  ------------>CBF    --------->O2--------->TOE1(3)
                                          ----------->RAV1(1)         <---------O2--------->AtMYB61
                                       --------->ANAC58    <---------AtLEC2    <---------ALFIN1    -
                                       --------->ANAC46  <---------YAB1<-----------TGA1     --------
                                       --------->ANAC58--------->YAB1<-----------STF1    --------->ANAC46
                                      --------->WOX13(1) --------->AtLEC2   --------->AtMYB61 ------
                              <---------YAB1<---------ALFIN1        <---------ALFIN1 -------->P  <--
 
agaggcttcatatgttgaacatcagaacatagtttgattatcaagcaacacatatcaatcatgcatgacttccacgtcaccacaaccttaccacgacgtg  10064500
                                                                     --------->YAB1
                                                               <---------AHL20(1)
--ANAC46                                                       --------->AHL20(1)
--O2   --------->At4g35610      --------->ARR14(2)            --------->AHL20(2)
--bZIP60(2)                     <---------ARR14(2)         --------->YAB1      <---------ICU4
-------->ZAT6                   <-----------ARR10         ----------->TBP      --------->ATHB51
->O2   <---------At4g35610      --------->GLK1(2)         --------->AHL20(2)--------->TOE2(3)<------
--->ALFIN1                     <---------GLK1(2)          <---------ATHB12  --------->YAB1  --------
---------GT1 --------->YAB1 --------->YAB1            ------------>CBF <---------YAB1    <---------YAB1
 
ttacactatgagctaatgagaaatatttctctcagaatctggtctaagttatcaaattccaataaatatatatcatcatccataattttcttatttttaa  10064600
                                                                --------->GLK1(2)
                                                                <---------ARR14(2)
                                                             --------------->AGL15
                                                             <---------------AGL15
                                                            <-----------------AGL3
                                                            ----------------->AGL1
                                                            <-----------------AGL1
                                                   --------->AGP1
                                                   --------->ARR14(2)
                                                   --------->ARR11(3)
                                               ---------->DOF2  --------->ARR14(2)
                                          ----------->HVH21 ----------------->AGL2
                                        --------->bZIP60(1) ----------------->AGL3
                                        <---------bZIP60(1) <-----------------AGL2
                                        <---------TGA1a     ----------------->AG
                                        <---------O2<------ZmHOX2a(2)
                                        =======================================MYC_MYB
                                        ==========================MYC_MYB
                                        --------->O2--------->CCA1(2)   ----------->GT1
                                        --------->TGA1a     ========================================
                                        <---------bZIP60(2)--------->ANAC46
                                        <---------ANAC55(2)--------->ANAC58
                                        --------->ANAC55(2)--------->ANAC58
                                        ==================bZIP_DOF  ----------->GT1
                 --------->YAB1       ------->GAMYB<---------ARR14(2)   --------->ANAC58
                <---------YAB1      <---------------------WRI1 <---------CCA1(2)
              --------->YAB1       --------->MYB52(1)     ------->GAMYB --------->ANAC58
-----GT1 <---------At4g35610      <---------WRKY12 <---------ARR11(3) <--------P            --------
->AHL20(2)   <---------YAB1       <---------WRKY38(1)    <---------ALFIN1   --------->AHL20(2)
 
tatccatcgttcagctattatcaaaaaacagccatggccaacgacgtgaccaaagatccaacacccaaatctggtaagaaaaaatagtttaagaaacatg  10064700
                                           <---------AHL20(2)
                                          <---------AHL20(2)
                                          --------->AHL20(2)
                                       <---------ICU4                     ==============HOX2a_HOX2a
                                      <---------ATHB51           <---------AHL20(2)
                                      --------->ICU4             --------->AHL20(2)
                                      <---------AHL20(2)        <---------AHL20(2)
                                      --------->AHL20(2)        --------->AHL20(2)
                               ---------->DOF2                  <---------AHL20(1)
                 <----------DOF2<---------TOE2(3)           <---------AHL20(2)
           <---------AHL20(2) <---------AHL20(2)          --------->ANAC55(2)    ------>ZmHOX2a(1)
     --------->AHL20(2)   --------------->AGL15           --------->TOE2(3)   ---------->ID1
   --------->AHL20(2)     <---------------AGL15         <-----------GT1   ------>ZmHOX2a(2)   ------
==========================================MADS_MADS --------->AHL20(2)  <---------ARR11(3) ---------
->YAB1    --------->AHL20(2)  --------->AHL20(2)  <---------GLK1(2)     --------->ARR11(3)<---------YAB1
 
atgccaaaaaatataaaattctttatcgactaattaaagaaataattaaatcagattttatacttaatttaatttgatcttgtccttgttattttcataa  10064800
                         <---------AHL20(2)
                         <-----------GT1
                     <---------RVE1(1)
                     <---------CCA1(1)
                    <---------ARR11(3)
                    --------->ARR14(2)                           ------>ZmHOX2a(1)
                    --------->ARR11(3)                     <---------ALFIN1
                    <---------ARR14(2)                    --------->ZAT14
                   <------ZmHOX2a(1)        --------->GLK1(2)  ----------->RAV1(2)
--->AHL20(2)     <---------ANAC46      <------ZmHOX2a(1)  <---------REM1(2)                      <--
>YAB1   --------->ARR11(3)          <------ZmHOX2a(1)     <---------ZAT14                <----------
 
attacattgaagacattgtggaggatatttacttatggaggaggaagaaactggccttctctacactcctggtctcaacatcgacatggattttacttag  10064900
                                   ====================================HOX2a_HOX2a
                          --------->ARR11(3)                       <---------LBD16
              --------->TOE1(3)    ------>ZmHOX2a(2)              <-----------RAV1(1)
              --------->YAB1<---------ANAC46                     <---------LBD16
  <---------TOE2(3)       ------->TEIL  <------NtERF2           ------>ZmHOX2a(1)               ----
  <---------TOE1(3)<---------YAB1--------->ARR14(2)             ----------->RAV1(2)           ------
--------DOF2  --------->TOE2(3)  <---------ARR14(2)     --------->YAB1                        ------
-GT1    --------->ZAT6   <---------CCA1(2)             <---------YAB1      <---------ZAT14    ------
 
cttttatggtttcactaccataaccattgtatcttggatcggcatcgcagtcgtctctatgattttcctctgggggagtttacttcgccttctcagcaag  10065000
                                          --------->AHL20(2)
                                        --------->ANAC58
        <-----------GT1                 --------->ANAC58
    <---------AHL20(2)              --------->ANAC58
    <---------ICU4                  --------->AtLEC2
    --------->AHL20(2)              --------->ANAC58
    --------->ATHB51            ------>ZmHOX2a(2)            --------->AHL20(1)
   --------->ICU4              <------ZmHOX2a(2)             <---------AHL20(2)      --------->AHL20(2)
--------->AHL20(1)            --------->ARR14(3)             <---------AHL20(1)     <---------YAB1
--------->AHL20(2)            <---------ARR11(3)             --------->AHL20(2)    --------->TOE2(3)
<---------AHL20(2)            <---------AGP1                --------->AHL20(2)   <---------YAB1  ---
<---------AHL20(1)            <-----------ARR10             <---------AHL20(2)   <------ZmHOX2a(2)
----->AHL20(2)                --------->ARR11(3)        --------->AHL20(2)      --------->ARR11(3)
--->ANAC58                    --------->ARR14(2)      <---------AHL20(2)        <---------ARR11(3)
--->ANAC58                    <---------ARR14(2)<---------ANAC55(2)         ---------->DOF2   ------
----->GT1<-----------GT1      <---------ARR14(3)--------->ANAC55(2)    <---------ANAC46       ------
 
taattaattattttccatttcaaactatttgaagatctcatgcaagaaaataagtattttaaaataaatttgttgtgtcaaaagatcattaaaaacacct  10065100
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AGI:  At2g23640.1   
Description:  reticulon family protein (RTNLB13). similar to reticulon family protein [Arabidopsis thaliana] (TAIR:AT3G10915.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO43334.1); contains InterPro domain Reticulon; (InterPro:IPR003388)
Range:  from: 10064634    to: 10066188    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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