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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<----------
ID1
---------
----------->
GT1
<---------
ICU4
----------->
GT1
---------->
DOF2
--------->
YAB1
--------->
ATHB12
--------->
TOE2(3)
--------->
AHL20(2)
---
ZAT14
--------->
TOE1(3)
<------
ZmHOX2a(1)
--------->
ICU4
-->
ZAT14
<----------
DOF2
---------->
DOF2
--------->
TOE1(2)
<---------
AHL20(2)
ctgaatgagtgaaatagtcagttctaatataaactttaaagcgcaaaaactaaaagagaacgagaagaaactaggacagacttctaaataatatttataa
10064200
<---------
MYB52(1)
<----------
DOF2
<---------
ANAC58
--------->
HSFB2a(2)
--------->
AHL20(2)
<---------
HSFB2a(2)
<---------
AHL20(2)
--------->
At4g35610
<---------
AHL20(2)
<---------
AHL20(2)
----------->
RAV1(2)
--------->
AHL20(2)
----------->
GT1
<----------
ID1
<---------
ANAC46
<----------
ID1
-
>
YAB1
----------->
GT1
<---------
ANAC58
<-----------
GT1
----------->
GT1
<------
actcgttcaagagattagagaaaacgaaaaaatcatctggaaattgcgttaagttgattaaattcacacattttgtaatgggtcaaaacgagttaattag
10064300
--------->
bZIP60(2)
<---------------------
WRI1
<--------
HAHB4
<-----------
TGA1
--------->
YAB1
<-----------
GT1
<-----------
HVH21
<---------
AHL20(2)
--------->
ARR14(2)
--------->
HSFB2a(2)
<----------
DOF2
--------->
ANAC58
---------->
DOF2
--------->
ANAC46
<---------
DAG2
--------->
ANAC58
--------->
SPL7
------>
ZmHOX2a(1)
----->
ZmHOX2a(1)
--------->
ANAC46
--------->
ANAC46
<---------
HSFB2a(2)
--------->
STY1(2)
---
ICU4
<---------
YAB1
<---------
At4g35610
--------->
MYB52(1)
<-----------
GT1
------>
ZmHOX2a(1)
tcctactttttctataattatccaagtcatcagatttactatccaagcgaacgaactaaagctcctcgaatttactcgtcatcgaatagtcctagctaca
10064400
<---------
DAG2
--------->
TOE2(3)
--------->
TGA2(2)
<-----------
HVH21
--------->
ANAC58
--------->
ANAC46
========================
MYC_MYB
--------->
ANAC55(1)
<---------
TGA1a
--------->
bZIP60(2)
<-------
<---------
ATHB12
--------->
TGA1a
<-------
--------->
WOX13(1)
--------->
ANAC58
<-------
------------>
CBF
--------->
O2
--------->
TOE1(3)
----------->
RAV1(1)
<---------
O2
--------->
AtMYB61
--------->
ANAC58
<---------
AtLEC2
<---------
ALFIN1
-
--------->
ANAC46
<---------
YAB1
<-----------
TGA1
--------
--------->
ANAC58
--------->
YAB1
<-----------
STF1
--------->
ANAC46
--------->
WOX13(1)
--------->
AtLEC2
--------->
AtMYB61
------
<---------
YAB1
<---------
ALFIN1
<---------
ALFIN1
-------->
P
<--
agaggcttcatatgttgaacatcagaacatagtttgattatcaagcaacacatatcaatcatgcatgacttccacgtcaccacaaccttaccacgacgtg
10064500
--------->
YAB1
<---------
AHL20(1)
--
ANAC46
--------->
AHL20(1)
--
O2
--------->
At4g35610
--------->
ARR14(2)
--------->
AHL20(2)
--
bZIP60(2)
<---------
ARR14(2)
--------->
YAB1
<---------
ICU4
-------->
ZAT6
<-----------
ARR10
----------->
TBP
--------->
ATHB51
->
O2
<---------
At4g35610
--------->
GLK1(2)
--------->
AHL20(2)
--------->
TOE2(3)
<------
--->
ALFIN1
<---------
GLK1(2)
<---------
ATHB12
--------->
YAB1
--------
---------
GT1
--------->
YAB1
--------->
YAB1
------------>
CBF
<---------
YAB1
<---------
YAB1
ttacactatgagctaatgagaaatatttctctcagaatctggtctaagttatcaaattccaataaatatatatcatcatccataattttcttatttttaa
10064600
--------->
GLK1(2)
<---------
ARR14(2)
--------------->
AGL15
<---------------
AGL15
<-----------------
AGL3
----------------->
AGL1
<-----------------
AGL1
--------->
AGP1
--------->
ARR14(2)
--------->
ARR11(3)
---------->
DOF2
--------->
ARR14(2)
----------->
HVH21
----------------->
AGL2
--------->
bZIP60(1)
----------------->
AGL3
<---------
bZIP60(1)
<-----------------
AGL2
<---------
TGA1a
----------------->
AG
<---------
O2
<------
ZmHOX2a(2)
=======================================
MYC_MYB
==========================
MYC_MYB
--------->
O2
--------->
CCA1(2)
----------->
GT1
--------->
TGA1a
========================================
<---------
bZIP60(2)
--------->
ANAC46
<---------
ANAC55(2)
--------->
ANAC58
--------->
ANAC55(2)
--------->
ANAC58
==================
bZIP_DOF
----------->
GT1
--------->
YAB1
------->
GAMYB
<---------
ARR14(2)
--------->
ANAC58
<---------
YAB1
<---------------------
WRI1
<---------
CCA1(2)
--------->
YAB1
--------->
MYB52(1)
------->
GAMYB
--------->
ANAC58
-----
GT1
<---------
At4g35610
<---------
WRKY12
<---------
ARR11(3)
<--------
P
--------
->
AHL20(2)
<---------
YAB1
<---------
WRKY38(1)
<---------
ALFIN1
--------->
AHL20(2)
tatccatcgttcagctattatcaaaaaacagcc
atggccaacgacgtgaccaaagatccaacacccaaatctg
gtaagaaaaaatagtttaagaaacatg
10064700
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
ICU4
==============
HOX2a_HOX2a
<---------
ATHB51
<---------
AHL20(2)
--------->
ICU4
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
---------->
DOF2
<---------
AHL20(1)
<----------
DOF2
<---------
TOE2(3)
<---------
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
--------->
ANAC55(2)
------>
ZmHOX2a(1)
--------->
AHL20(2)
--------------->
AGL15
--------->
TOE2(3)
---------->
ID1
--------->
AHL20(2)
<---------------
AGL15
<-----------
GT1
------>
ZmHOX2a(2)
------
==========================================
MADS_MADS
--------->
AHL20(2)
<---------
ARR11(3)
---------
->
YAB1
--------->
AHL20(2)
--------->
AHL20(2)
<---------
GLK1(2)
--------->
ARR11(3)
<---------
YAB1
atgccaaaaaatataaaattctttatcgactaattaaagaaataattaaatcagattttatacttaatttaatttgatcttgtccttgttattttcataa
10064800
<---------
AHL20(2)
<-----------
GT1
<---------
RVE1(1)
<---------
CCA1(1)
<---------
ARR11(3)
--------->
ARR14(2)
------>
ZmHOX2a(1)
--------->
ARR11(3)
<---------
ALFIN1
<---------
ARR14(2)
--------->
ZAT14
<------
ZmHOX2a(1)
--------->
GLK1(2)
----------->
RAV1(2)
--->
AHL20(2)
<---------
ANAC46
<------
ZmHOX2a(1)
<---------
REM1(2)
<--
>
YAB1
--------->
ARR11(3)
<------
ZmHOX2a(1)
<---------
ZAT14
<----------
attacattgaag
acattgtggaggatatttacttatggaggaggaagaaactggccttctctacactcctggtctcaacatcgacatggattttacttag
10064900
====================================
HOX2a_HOX2a
--------->
ARR11(3)
<---------
LBD16
--------->
TOE1(3)
------>
ZmHOX2a(2)
<-----------
RAV1(1)
--------->
YAB1
<---------
ANAC46
<---------
LBD16
<---------
TOE2(3)
------->
TEIL
<------
NtERF2
------>
ZmHOX2a(1)
----
<---------
TOE1(3)
<---------
YAB1
--------->
ARR14(2)
----------->
RAV1(2)
------
--------
DOF2
--------->
TOE2(3)
<---------
ARR14(2)
--------->
YAB1
------
-
GT1
--------->
ZAT6
<---------
CCA1(2)
<---------
YAB1
<---------
ZAT14
------
cttttatggtttcactaccataaccattgtatcttggatcggcatcgcagtcgtctctatgattttcctctgggggagtttacttcgccttctcagcaa
g
10065000
--------->
AHL20(2)
--------->
ANAC58
<-----------
GT1
--------->
ANAC58
<---------
AHL20(2)
--------->
ANAC58
<---------
ICU4
--------->
AtLEC2
--------->
AHL20(2)
--------->
ANAC58
--------->
ATHB51
------>
ZmHOX2a(2)
--------->
AHL20(1)
--------->
ICU4
<------
ZmHOX2a(2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(1)
--------->
ARR14(3)
<---------
AHL20(1)
<---------
YAB1
--------->
AHL20(2)
<---------
ARR11(3)
--------->
AHL20(2)
--------->
TOE2(3)
<---------
AHL20(2)
<---------
AGP1
--------->
AHL20(2)
<---------
YAB1
---
<---------
AHL20(1)
<-----------
ARR10
<---------
AHL20(2)
<------
ZmHOX2a(2)
----->
AHL20(2)
--------->
ARR11(3)
--------->
AHL20(2)
--------->
ARR11(3)
--->
ANAC58
--------->
ARR14(2)
<---------
AHL20(2)
<---------
ARR11(3)
--->
ANAC58
<---------
ARR14(2)
<---------
ANAC55(2)
---------->
DOF2
------
----->
GT1
<-----------
GT1
<---------
ARR14(3)
--------->
ANAC55(2)
<---------
ANAC46
------
taattaattattttccatttcaaactatttgaagatctcatgcaagaaaataagtattttaaaataaatttgttgtgtcaaaagatcattaaaaacacct
10065100
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AGI:
At2g23640.1
Description:
reticulon family protein (RTNLB13). similar to reticulon family protein [Arabidopsis thaliana] (TAIR:AT3G10915.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO43334.1); contains InterPro domain Reticulon; (InterPro:IPR003388)
Range:
from: 10064634
to: 10066188
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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