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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
RVE1(1)
<---------
ARR11(3)
--------->
GLK1(2)
--------->
ARR11(3)
--------->
YAB1
--------->
LBD16
<---------
ATHB12
--------->
HSFB2a(2)
<---------
ATHB51
<----------
DOF2
--------->
TOE2(3)
<---------
HSFB2a(2)
--------->
GLK1(2)
--------->
TOE2(3)
--------->
TOE2(3)
--------->
ARR14(2)
-------->
DOF2
<---------
GLK1(2)
<---------
GLK1(2)
--------->
TOE2(3)
------>
ZmHOX2a(1)
<----
gaaaagaatcaataataaacccaaattcttactttaaaatccaaattcttaaaccctagttttgcctcaaaaacccaattcctccagaaaaatctctcct
10029500
--------->
TOE2(3)
<---------
ICU4
----
--------->
YAB1
---------------
------
DOF2
<---------
ATHB12
<---------
YAB1
--------->
MYB52(1)
ttaaactgatacaaatcgaatcataatccctaattccacaaactcatctttcaaatccaaaaccccaaaatatgatggaatgagagaaacggagacagag
10029600
------>
ZmHOX2a(2)
<---------
RVE1(1)
<------
ZmHOX2a(2)
--------->
ARR11(3)
<---------
ARR14(3)
<---------
ARR11(3)
--------->
ARR14(3)
--------->
ARR14(2)
--------->
AGP1
<---------
ARR14(2)
<---------
DEAR3(1)
----------->
ARR10
------>
ZmHOX2a(2)
<---------
TOE1(3)
==========================
HOX2a_HOX2a
<---------
ANAC46
=============================
HOX2a_HOX2a
<---------
TOE2(3)
==============================
HOX2a_HOX2a
<---------
At5g28300
===========================
HOX2a_HOX2a
------------>
AtMYB77
<-----------
GT1
<------
ZmHOX2a(2)
--------->
GLK1(2)
--------->
SPL7
<---------
ARR11(3)
<---------
ARR14(2)
<---------
MYB52(1)
<------
--------->
ARR14(2)
--------->
ARR14(2)
<---------
At5g28300
--------
--------->
ARR11(3)
<---------
GLK1(2)
<-------
GAMYB
<-----------------
AGL3
------>
DOF2
<---------
ARR14(2)
<------
ZmHOX2a(1)
------------>
MYB.PH3(1)
<---------
--------->
ANAC81
----------->
ARR10
<------
ZmHOX2a(1)
--------->
MYB52(1)
<----------
DOF2
aaaggaagagattac
cgagaagatcggcgagaaggctgaagaggaggagtcggattctgaacagaattacggttaccgtaagatcttttaacgggtcggg
10029700
<----------
DOF2
--------->
ARR14(1)
--------->
GLK1(2)
<---------
GLK1(2)
--------->
ARR11(3)
--------->
ARR14(2)
<---------
ARR11(3)
----------->
ARR10
<---------
TOE1(2)
==========================
HOX2a_HOX2a
---
DEAR3(2)
--------->
CCA1(2)
------>
ZmHOX2a(1)
------>
ZmHOX2a(1)
---
->
ETT(1)
<---------
ANAC58
--------->
At4g35610
------>
ZmHOX2a(2)
<--
--
HVH21
<---------
ANAC58
<---------
GLK1(2)
<---------
ARR14(2)
---------->
DOF2
tcttgggtttgagtttgcgagagagatttaagagacccagattgttcatcctctgaagattctctttgatcctctcttccctgcattgttcgtaaagaga
10029800
<---------
ANAC46
<---------
TOE2(3)
<---------
ANAC55(2)
--------->
HSFB2a(2)
<---------
HSFB2a(2)
<---------
YAB1
--------->
ANAC55(2)
--------->
ICU4
--------->
ATHB12
<---------
TOE1(3)
--------->
YAB1
<----------
DOF2
<---------
TOE2(3)
------->
TEIL
<---------
YAB1
--------->
GLK1(1)
--------->
LBD16
--------->
MYB59
--------->
ICU4
<----------
DOF2
<---------
LBD16
<---------------
AtSPL8
<XXXXXXXXXXXXXXXXXX
------>
ARR11(3)
<-----------------
AG
<---------
GLK1(2)
--------->
YAB1
-------
ARR11(3)
----------->
ARR10
<---------------
AtSPL3
--------->
ICU4
<-----
gacctttggggtttctttgattagttccggattagggtttgatttaggtactgaatcttgtgcttcagttctcatggtgagcat
gatgatgatgaagatg
10029900
--------->
YAB1
<------------
CBF
<---------
At4g35610
<-----------
TBP
<-----------
HVH21
--------->
At4g35610
<---------
TOE1(3)
--------->
GLK1(1)
*
TSS
<---------
LBD16
<---------
TOE2(3)
XX
MIR414
--------->
GLK1(1)
<---------
RAP2.3(3)
---------->
DOF2
<---------
AHL20(2)
----
YAB1
<---------
GLK1(1)
<----------
DOF2
<---------
YAB1
--------->
MYB59
<-------
atactgggtttcagatttcagaactctctgtcactctctttatg
gctgctctctggagaaatgatagtaaaagtttaggtttttatattgttttgagttg
10030000
<---------
AHL20(2)
--------->
HSFB2a(2)
<---------
YAB1
<---------
HSFB2a(2)
--------->
ICU4
<---------
ANAC58
<-----------
HVH21
--------->
ZAT18
------->
GAMYB
<---------
ZAT18
--------->
MYB46(3)
--------->
DAG2
<---------
GLK1(2)
------>
ZmHOX2a(1)
--------->
AHL20(2)
<---------
ANAC58
--------->
ICU4
--
At4g35610
--------->
MYB52(1)
---------->
DOF2
<---------
ZAT6
<-----------
GT1
-------
atgtcctgatgttacagcaacggtcggatttattatttgaaaagtgtgcttatggaaatggggaatagtgtttggaaatgtttactagcttctgtatcat
10030100
--------------->
AGL15
==========================================================
<---------------
AGL15
<-----------
GT1
-------->
HAHB4
<---------
YAB1
--------->
ATHB12
<---------
ARR11(3)
<---------
ICU4
--------->
ARR11(3)
<---------
YAB1
<---------
AHL20(1)
<---------
ATHB12
--------->
AHL20(1)
----
--------->
ICU4
<---------
AHL20(2)
<---------
At4g35610
--------->
ARR14(2)
<---
--------->
TOE2(3)
<---------
AHL20(2)
--------->
At4g35610
<---------
ARR14(2)
<---
-->
YAB1
--------->
YAB1
--------->
AHL20(2)
<---------
YAB1
<---------
ZAT6
---------->
DOF2
aaatccctaatgatgggacttaatctttttaaatatttttgtttccttctaattgcaatacagctaagtagagatagtgggaatatggaaagttgtaatc
10030200
<---------
TOE1(3)
<---------
YAB1
<---------
AHL20(2)
<---------
TOE2(3)
--------->
AHL20(2)
<---------
DAG2
--------->
AHL20(2)
<----------
DOF2
--------->
AHL20(2)
============
MADS_MADS
<---------
ZAT18
<---------
TOE2(3)
----------->
AGL15
--------->
ZAT18
<-----------
GT1
------------
AGL15
<---------
ZAT14
--------->
YAB1
--------->
YAB1
-------
DOF2
<-----------
GT1
--------->
ZAT14
<---------
YAB1
<---------
AHL20(2)
---
ttttaagagaaaattaataaaccattctacaaaaattgttcttggtgcactttattaagattacgaatattaacatttaaacaaatttccaatagaaata
10030300
<---------
ARR14(2)
--------->
ZAT6
<-----------
GT1
------>
MYB46(1)
------->
GAMYB
------>
MYB83
<---------
MYB59
--------->
WOX13(1)
---------->
ARF1
------>
MYB46(1)
<----------
DOF2
<-----------
HVH21
--------->
AtMYB61
<------
ZmHOX2a(1)
------->
DOF2
---------->
DOF2
<-----------
ARR10
------>
MYB83
--------->
ARR14(2)
<-----
taaagtttgacttttgagtaaagtttagggactgtccataagattgagagtctcaccttgtcaaccaaattaacaccaaatcccttcacatttaggagga
10030400
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AGI:
At2g23530.1
Description:
similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G37110.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44617.1)
Range:
from: 10027732
to: 10029944
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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