Home
Tools
- Search
- Colocalization
- Gene Analysis
- Gene Identification
- Small RNA Targets
- MicroRNA Targets
Description
Documentation
Citations
Downloads
Publications
History
Contact
Links
Disclaimer
For complete usage of AthaMap please enable JavaScript in the settings of your browser!
Search
Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
--------->
AHL20(2)
--------->
AHL20(1)
--------->
YAB1
<----------
DOF2
<---------
ANAC55(2)
<---
-------->
AHL20(2)
<---------
AHL20(2)
<---------
SPL7
<---------------
AtSPL8
<-------
TEIL
------->
YAB1
<---------
AHL20(2)
<---------------
AtSPL8
<---------
ARR14(2)
------>
AHL20(2)
<---------
YAB1
--------------->
AtSPL8
--------->
YAB1
->
TOE2(3)
<---------
At4g35610
<---------------
AtSPL3
----------->
GT1
-
GT1
--------->
AHL20(2)
---------->
ID1
--------------->
AtSPL3
<---------
TOE2(2)
--------->
ARR14(2)
ataaaaataatatacagttgatattattttgttctttctgaattttgttatgaggtaccattaccatatagtacgtagatttacaaaaatgaaaatacgt
9586600
--------->
WOX13(1)
<---------
ATHB12
--------->
MYB46(3)
------>
MYB46(1)
--------->
ANAC58
-------->
P
--------->
ANAC58
------>
MYB83
--------->
MYB55(1)
<---------
MYB111(2)
<---------
MYB46(2)
--------->
MYB46(3)
<-----------
GT1
--------->
MYB52(2)
<---------
MYB111(1)
--------->
ARR11(3)
--------->
At5g28300
--------->
ANAC46
---------->
DOF2
------
REM1(1)
<---------
ARR11(3)
----------->
GT1
----------->
GT1
--------->
ZAT18
<--
tgtagcccttgatgttcttcaggtcttctagttagtttttgcagtaaataccaaccaattagttacaaggagtataagtgaacaaagtgagacaactcat
9586700
---------->
DOF2
--------->
YAB1
--------------->
AGL15
<---------------
AGL15
<-
<---------
ANAC58
--
<---------
ANAC58
----------->
HVH21
<--
<---------
YAB1
--------->
WRKY12
--------->
ATHB12
<-----------
GT1
-------
AHL20(2)
<---------
ALFIN1
<---------
ALFIN1
<---------
At4g35610
------>
ZmHOX2a(1)
tttatgcttccctataaaaagaaattccccactgacccaaacacacacttctcttctctctctcatctcattggagacttataaatcctattacctcacc
9586800
<---------
ALFIN1
--------->
ZAT14
--------->
AtMYB61
<---------
ALFIN1
--------->
ANAC46
------->
GAMYB
--------->
ANAC46
<---------
ICU4
--------->
AtMYB61
<--------
HAHB4
--------->
MYB46(3)
--------->
AHL20(1)
--------->
ATHB12
--------->
YAB1
<---------
AHL20(1)
--------->
ICU4
<---------
ATHB12
<---------
AHL20(1)
<---------
YAB1
--------
ARR14(2)
--------->
AHL20(1)
--------->
YAB1
------->
ARR14(2)
--------->
AHL20(2)
--------->
YAB1
-------
CCA1(2)
<---------
ARR11(3)
--------->
AHL20(2)
<----------
DOF2
<----
atatccaataaccaccacacacagaccaatatccaaaaaaaaaactaaaactaaaaatataatatatatcgttttctttccaaaaataatcatttaagaa
9586900
--------->
AHL20(2)
--------->
WOX13(1)
<---------
AHL20(2)
*
TSS
--------->
REM1(1)
--------->
AHL20(2)
--------->
ARR11(3)
<---------
AHL20(2)
<---------
ARR11(3)
--------->
YAB1
<---------
YAB1
<-----------
ARR10
<---------
ATHB12
<---------
YAB1
--------->
AHL20(2)
--------->
CCA1(1)
------>
MYB46(1)
--------->
YAB1
--------->
YAB1
--------->
LBD16
------>
ZmHOX2a(1)
------>
ZmHOX2a(1)
<---------
ATHB12
--------->
AHL20(2)
--------->
LBD16
--------->
TOE2(3)
-------
-----
GLK1(1)
<---------
ZAT6
<-----------
GT1
--------->
RVE1(1)
------>
MYB83
<---------
CCA1(2)
<
accccatcatcttgatagtattataaaattaataaacctctccctgaaaatat
ctcatccttcaccaatcaaaaccttctcatgtcttcttctctcctcg
9587000
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(1)
--------->
ARR11(3)
<---------
ARR11(3)
--------->
AHL20(1)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
MYB52(1)
----------->
GT1
<----------
DOF2
--------->
ALFIN1
<------------------------
ANAC81
------>
ZmHOX2a(1)
<---------
ANAC46
<-----------
GT1
------>
ZmHOX2a(2)
<---------
TOE2(3)
<---------
MYB52(1)
<------------------------
ANAC81
-->
HSFB2a(2)
--------->
AHL20(2)
<----------
DOF2
<<<<<<<<<
TBF1
<----------
DOF2
<---
----------
DOF2
<---------
AHL20(2)
<---------
DAG2
<<<<<<<<<
TBF1
<-----------
GT1
<---
acctttgaggtggaaaattaaatatattcccttagctttttttctcctttagttttcttcttcttcttgagttttttttcttttgatcctctctaatttc
9587100
------>
ZmHOX2a(2)
--------->
ARR11(3)
--------->
AGP1
<---------
ARR11(1)
<---------
ARR11(3)
<----------
DOF2
<---------
ANAC46
<-------
TEIL
<------
ZmHOX2a(2)
<XXXXXXXXXXXXXXXXXXXXX
MIR2936
<---------
At5g28300
------
ANAC58
--------->
ARR11(3)
<---------
ANAC46
<---------
CCA1(2)
<-----------
GT1
<
------
ANAC58
<---------
AGP1
---------->
DOF2
<----------
DOF2
<---------
TOE2(3)
----
cttgttgattcatcgactagatctaattcttctcacaaaagactgagtgtgttctttctttcaaatctttcaaaaactagggtttttactgtcttgaaat
9587200
<---------------
AGL15
===========================================================================================
<-----------------
AGL2
<----------
DOF2
<-----------------
AGL3
<---------
DAG2
----------------->
AGL3
--------------
----------------->
AGL2
<-------------
<---------
AHL20(2)
---------------
---------
ICU4
---------->
DOF2
<----------
DOF2
---------->
DOF2
----->
YAB1
--------------->
AGL15
<-----------
GT1
<-----------
GT1
<----------
DOF2
catatttattcttctaaatttagcaaaaagaacacgatttactttccatttcagtcgtcttgtcactctctctctcttctttaaagtctccctttttagc
9587300
<---------
ANAC58
<---------
ANAC58
------>
ZmHOX2a(1)
<---------
CCA1(2)
--------->
At4g35610
<---------
GLK1(2)
<---------
AHL20(2)
------>
ZmHOX2a(1)
--------->
YAB1
==
MADS_MADS
<---------
AHL20(2)
------>
ZmHOX2a(1)
<-----------
GT1
<---------
ICU4
---
->
AGL15
--------->
AHL20(2)
<---------
ALFIN1
--------->
ZAT14
--------->
YAB1
-----
--
AGL15
<---------
AHL20(1)
------>
ZmHOX2a(1)
<----------
DOF2
<---------
ATHB12
<-----
-->
AGL2
--------->
AHL20(1)
<<<<<<<<<
TBF1
<---------
ALFIN1
<----------
DOF2
<---------
YAB1
aaaaattctctctctcacaaaatttatttcctctggcttcttcttcctcctcctccatctcttctctttactctctctttaatcatctctcattcttgaa
9587400
<---------
AHL20(2)
--------->
AHL20(2)
<-------
TEIL
--------->
AGP1
--------->
ARR14(2)
<---------
ARR11(3)
--------->
ARR11(3)
<---------
ARR14(2)
--------->
HSFB2a(1)
---------->
DOF2
--------->
At4g35610
<---
--------->
YAB1
--------->
HSFB2a(2)
<---------
At4g35610
<---
--------->
WOX13(1)
--------->
HSFC1(1)
--------->
TOE1(3)
<---
------>
ZmHOX2a(2)
<---------
HSFB2a(2)
--------->
TOE2(3)
<----------
DOF2
<---------
YAB1
------>
YAB1
<---------
HSFC1(1)
--------->
YAB1
<---------
ANAC46
<-------
GAMYB
-->
TEIL
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
TOE1(2)
<---------
ANAC58
<---------
MYB46(3)
----
CCA1(2)
--------->
WOX13(1)
<------
ZmHOX2a(2)
--------->
TOE2(2)
<---------
ANAC58
--------->
MYB52(2)
tcttgatccatcaaaatcaatcccgttctcgaaagatccattaaaatcaaaacctaagctctctctcttgcttctagggtttttttgttcgttgtg
atgg
9587500
Previous
Next
AGI:
At2g22540.1
Description:
SVP (SHORT VEGETATIVE PHASE); transcription factor. Identical to MADS-box protein SVP (SVP) [Arabidopsis Thaliana] (GB:Q9FVC1;GB:Q9SJY1); similar to AGL24 (AGAMOUS-LIKE 24), protein binding / protein heterodimerization/ protein homodimerization/ transcription factor [Arabidopsis thaliana] (TAIR:AT4G24540.1); similar to short vegetative phase protein [Brassica rapa subsp. campestris] (GB:ABI96182.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487)
Range:
from: 9586954
to: 9590973
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
printer-friendly version