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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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  --------->AHL20(2)
  --------->AHL20(1)
 --------->YAB1               <----------DOF2                        <---------ANAC55(2)        <---
-------->AHL20(2)    <---------AHL20(2)           <---------SPL7<---------------AtSPL8      <-------TEIL
------->YAB1       <---------AHL20(2)           <---------------AtSPL8                    <---------ARR14(2)
------>AHL20(2)    <---------YAB1               --------------->AtSPL8                --------->YAB1
->TOE2(3)   <---------At4g35610                 <---------------AtSPL3               ----------->GT1
-GT1--------->AHL20(2)     ---------->ID1       --------------->AtSPL3  <---------TOE2(2) --------->ARR14(2)
 
ataaaaataatatacagttgatattattttgttctttctgaattttgttatgaggtaccattaccatatagtacgtagatttacaaaaatgaaaatacgt  9586600
                                                    --------->WOX13(1)
                                                  <---------ATHB12
                                                  --------->MYB46(3)
                                                 ------>MYB46(1)
                                                 --------->ANAC58
                                                 -------->P
                                                 --------->ANAC58
                                                 ------>MYB83
                                                --------->MYB55(1)
                                               <---------MYB111(2)
                                               <---------MYB46(2)
                                               --------->MYB46(3)
                                            <-----------GT1
                             --------->MYB52(2)<---------MYB111(1)
                  --------->ARR11(3)   --------->At5g28300     --------->ANAC46---------->DOF2
------REM1(1)     <---------ARR11(3)  ----------->GT1   ----------->GT1    --------->ZAT18       <--
 
tgtagcccttgatgttcttcaggtcttctagttagtttttgcagtaaataccaaccaattagttacaaggagtataagtgaacaaagtgagacaactcat  9586700
             ---------->DOF2
           --------->YAB1
        --------------->AGL15
        <---------------AGL15                                                                     <-
  <---------ANAC58                                                                                --
  <---------ANAC58          ----------->HVH21                                                    <--
<---------YAB1              --------->WRKY12                    --------->ATHB12       <-----------GT1
-------AHL20(2)          <---------ALFIN1<---------ALFIN1    <---------At4g35610    ------>ZmHOX2a(1)
 
tttatgcttccctataaaaagaaattccccactgacccaaacacacacttctcttctctctctcatctcattggagacttataaatcctattacctcacc  9586800
             <---------ALFIN1
            --------->ZAT14
           --------->AtMYB61
           <---------ALFIN1
          --------->ANAC46
        ------->GAMYB
        --------->ANAC46                                                              <---------ICU4
        --------->AtMYB61                                                             <--------HAHB4
       --------->MYB46(3)                                  --------->AHL20(1)         --------->ATHB12
     --------->YAB1                                        <---------AHL20(1)        --------->ICU4
    <---------ATHB12                                  <---------AHL20(1)             <---------YAB1
--------ARR14(2)                                      --------->AHL20(1)           --------->YAB1
------->ARR14(2)                                      --------->AHL20(2)        --------->YAB1
-------CCA1(2)            <---------ARR11(3)       --------->AHL20(2)   <----------DOF2        <----
 
atatccaataaccaccacacacagaccaatatccaaaaaaaaaactaaaactaaaaatataatatatatcgttttctttccaaaaataatcatttaagaa  9586900
                         --------->AHL20(2)                   --------->WOX13(1)
                         <---------AHL20(2)          *TSS --------->REM1(1)
                     --------->AHL20(2)        --------->ARR11(3)
                     <---------AHL20(2)        <---------ARR11(3)--------->YAB1
                <---------YAB1                 <-----------ARR10<---------ATHB12
        <---------YAB1  --------->AHL20(2)    --------->CCA1(1)------>MYB46(1)
   --------->YAB1--------->YAB1         --------->LBD16 ------>ZmHOX2a(1)                    ------>ZmHOX2a(1)
  <---------ATHB12  --------->AHL20(2) --------->LBD16 --------->TOE2(3)                     -------
-----GLK1(1)  <---------ZAT6  <-----------GT1 --------->RVE1(1)------>MYB83   <---------CCA1(2)    <
 
accccatcatcttgatagtattataaaattaataaacctctccctgaaaatatctcatccttcaccaatcaaaaccttctcatgtcttcttctctcctcg  9587000
                   <---------AHL20(2)
                   --------->AHL20(2)
                   <---------AHL20(1)
                   --------->ARR11(3)
                   <---------ARR11(3)
                   --------->AHL20(1)
                  --------->AHL20(2)
               <---------AHL20(2)           <---------MYB52(1)
       ----------->GT1                     <----------DOF2
      --------->ALFIN1                   <------------------------ANAC81             ------>ZmHOX2a(1)
    <---------ANAC46                 <-----------GT1                               ------>ZmHOX2a(2)
   <---------TOE2(3)       <---------MYB52(1)                     <------------------------ANAC81
-->HSFB2a(2)  --------->AHL20(2)<----------DOF2          <<<<<<<<<TBF1      <----------DOF2     <---
----------DOF2<---------AHL20(2)<---------DAG2        <<<<<<<<<TBF1      <-----------GT1        <---
 
acctttgaggtggaaaattaaatatattcccttagctttttttctcctttagttttcttcttcttcttgagttttttttcttttgatcctctctaatttc  9587100
                  ------>ZmHOX2a(2)                         --------->ARR11(3)
                --------->AGP1                              <---------ARR11(1)
                <---------ARR11(3)                    <----------DOF2                   <---------ANAC46
     <-------TEIL<------ZmHOX2a(2)           <XXXXXXXXXXXXXXXXXXXXXMIR2936         <---------At5g28300
------ANAC58    --------->ARR11(3)       <---------ANAC46  <---------CCA1(2)      <-----------GT1  <
------ANAC58    <---------AGP1   ---------->DOF2  <----------DOF2          <---------TOE2(3)    ----
 
cttgttgattcatcgactagatctaattcttctcacaaaagactgagtgtgttctttctttcaaatctttcaaaaactagggtttttactgtcttgaaat  9587200
          <---------------AGL15
         ===========================================================================================
         <-----------------AGL2                                                         <----------DOF2
         <-----------------AGL3                                                         <---------DAG2
         ----------------->AGL3                                                       --------------
         ----------------->AGL2                                                       <-------------
  <---------AHL20(2)                                                                 ---------------
---------ICU4         ---------->DOF2 <----------DOF2                         ---------->DOF2
----->YAB1--------------->AGL15    <-----------GT1         <-----------GT1 <----------DOF2
 
catatttattcttctaaatttagcaaaaagaacacgatttactttccatttcagtcgtcttgtcactctctctctcttctttaaagtctccctttttagc  9587300
                                <---------ANAC58
                                <---------ANAC58
                           ------>ZmHOX2a(1)         <---------CCA1(2)           --------->At4g35610
<---------GLK1(2)   <---------AHL20(2)           ------>ZmHOX2a(1)          --------->YAB1
==MADS_MADS        <---------AHL20(2)         ------>ZmHOX2a(1) <-----------GT1<---------ICU4    ---
->AGL15            --------->AHL20(2)        <---------ALFIN1  --------->ZAT14 --------->YAB1  -----
--AGL15            <---------AHL20(1)      ------>ZmHOX2a(1)  <----------DOF2 <---------ATHB12<-----
-->AGL2            --------->AHL20(1)<<<<<<<<<TBF1 <---------ALFIN1      <----------DOF2<---------YAB1
 
aaaaattctctctctcacaaaatttatttcctctggcttcttcttcctcctcctccatctcttctctttactctctctttaatcatctctcattcttgaa  9587400
                                      <---------AHL20(2)
                                      --------->AHL20(2)
                                 <-------TEIL
                               --------->AGP1
                               --------->ARR14(2)
                               <---------ARR11(3)
                               --------->ARR11(3)
                               <---------ARR14(2)
                             --------->HSFB2a(1)
                           ---------->DOF2           --------->At4g35610                        <---
       --------->YAB1   --------->HSFB2a(2)          <---------At4g35610                        <---
    --------->WOX13(1)  --------->HSFC1(1)       --------->TOE1(3)                              <---
   ------>ZmHOX2a(2)    <---------HSFB2a(2)      --------->TOE2(3) <----------DOF2        <---------YAB1
------>YAB1             <---------HSFC1(1) --------->YAB1         <---------ANAC46    <-------GAMYB
-->TEILxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     --------->TOE1(2)<---------ANAC58   <---------MYB46(3)
----CCA1(2)   --------->WOX13(1)<------ZmHOX2a(2)--------->TOE2(2)<---------ANAC58   --------->MYB52(2)
 
tcttgatccatcaaaatcaatcccgttctcgaaagatccattaaaatcaaaacctaagctctctctcttgcttctagggtttttttgttcgttgtgatgg  9587500
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AGI:  At2g22540.1   
Description:  SVP (SHORT VEGETATIVE PHASE); transcription factor. Identical to MADS-box protein SVP (SVP) [Arabidopsis Thaliana] (GB:Q9FVC1;GB:Q9SJY1); similar to AGL24 (AGAMOUS-LIKE 24), protein binding / protein heterodimerization/ protein homodimerization/ transcription factor [Arabidopsis thaliana] (TAIR:AT4G24540.1); similar to short vegetative phase protein [Brassica rapa subsp. campestris] (GB:ABI96182.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487)
Range:  from: 9586954    to: 9590973    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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