Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              <-------GAMYB           <---------MYB46(3)        <-----------HVH21       --------->DEAR3(1)       ------->GAMYB      --------->DEAR3(2)                                                                            <      --------->MYB46(3)                 <----------DOF2                                            - -------GLK1(2)               <-----------RAV1(2)                     <---------ARR14(2)         ---- ------>ARR14(2)             <------ZmHOX2a(2)                        --------->ARR14(2) <---------ARR14(2) -------ARR14(2)     <---------ARR11(3) <---------ANAC58             <------ZmHOX2a(1)   --------->ARR14(2) ---ZmHOX2a(1)       --------->ARR11(3) <---------ANAC58     >>>>>>>>>TBF1              <------ZmHOX2a(1) ----TOE2(3)<---------At4g35610  <------ZmHOX2a(1)    --------->At4g35610----------->HVH21     ------   gattctcaaccgtcggatgagaacatctccgatcaggagattgctttctcagacgaagcggaagaagaagaggatttgacagaatgaagaggatttagca  9280400                      --------->ZAT6     ------->TEIL             --------->ZAT14        --------->MYB52(1)             <---------ZAT14      <---------MYB52(2) ---------YAB1      <-----------GT1--------->TOE1(2)                   --------------->AGL15 -------->ICU4 ----------->GT1<---------YAB1                           <---------------AGL15 ----->ICU4--------->ZAT14  --------->AHL20(2)                  <---------YAB1   <---------ARR14(2) --->YAB1  <---------ZAT14  --------->YAB1                    --------->YAB1 --------->YAB1<---------   taatgaatagttctgtacagtttaacacaattataaacgaacgaatgtgtgaatgagtctatatttataaatactaaaatgagaatacttgttctttcat  9280500                                                            --------->LBD16                                                            ------>NtERF2                                                           --------->ANAC58                                                           --------->DEAR3(1)                                                           --------->ANAC58                                                           --------->ANAC46                                                      <---------ATERF1(1)                                                      ------>NtERF2                                        ------>MYB46(1)  ------>ZmHOX2a(1)                        <---------At5g28300       ------->GAMYB                 --------->ABI4(2)                       <-----------GT1  --------->MYB52(1)<---------LBD16       <---------ZAT18                    <----------DOF2     ------>MYB83 --------->DEAR3(1)       <---------MYB52(1)    -              --------->DAG2           --------->MYB55(1)<---------ATERF1(1) --------->LBD16        - ------>ZmHOX2a(1)  <---------DAG2    --------->AtMYB61 <---------ALFIN1   <---------LBD16         <- -DOF2       ---------->DOF2  ----------->GT1------------>CBF     <----------DOF2      <---------GLK1(2)   gtcctaagaattcgaaaaagcacttttacagtttgtgaaaccaaacgctcaatcgcctcctccgccatcttttctcttccggtgctcttgattctctcaa  9280600         <---------AHL20(2)        <---------AHL20(1)        <---------ARR11(3)        --------->ARR11(3)       <---------CCA1(2)              <---------ZAT6   <---------ANAC46              <----------DOF2                  <---------WOX13(1) ------>NtERF2                 <---------DEAR3(2)             <---------WOX13(1)            <-------- --------->LBD16               <------MYB46(1)               <------------CBF          <---------DAG2 -------->DEAR3(1)             <------MYB83                 --------->ATHB51           <----------DOF2 -------->ANAC46   ---------->DOF2   <---------TOE2(3)     <---------YAB1      <---------ARR14(2) --------LBD16    --------->AHL20(2) <---------TOE1(3)     <---------AHL20(2)  <------------CBF   ctccgccgtatatatttcaaataaagagagagtcggtttagggttaaccagaagtgagtgtataattgatagattagagagtattgggacttttttaatc  9280700                                                                                                 <---                               --------->AHL20(2)           <---------bZIP60(1)                  <---                              --------->AHL20(2)            --------->bZIP60(1)                  <---                        ----------->GT1       <------------CBF                                  <<<<<                  ------>ZmHOX2a(1)        <---------At4g35610           <---------YAB1<---------RAP2.6(2) -AHL20(2)<---------LBD16     <---------AHL20(2)         ----------->HVH21 <---------GLK1(2)    <<<<<   tatagcgataacttcgggtccttaagttgaaaataatttttcttcagctattgactgaaatgacatcgttttagtatgattctcagttttcggctatttg  9280800                  ------->MYC3                  ------->MYC2                  <-------MYC3                  <-------MYC2           ------->MYC2           <-------MYC2           ------->MYC3           <-------PIF5           <-------MYC4           <-------MYC3           ------->PIF5           ------->MYC4          >>>>>>>>>>HY5          <---------TGA1a          <<<<<<<<<<HY5          <---------bZIP60(2)          --------->bZIP60(2)          --------->TGA1a          --------->PIF3(3)          <---------O2        <---------ALFIN1       ---------------->PIF3(2)      ----------------->PIF3(1)      <----------------PIF3(2)   <---------ANAC58                                                                       --------->AHL20(2)   <---------ANAC58--------->ALFIN1                          <-----------TGA1       <----------ID1 ------ANAC58  <---------ANAC58                              <-----------HVH21      ----------->GT1 ------AtLEC2  <---------ANAC58                             --------->bZIP60(2)    ----------->GT1 ------ANAC58  <---------ANAC46    --------->ZAT14          --------->ANAC46      --------->DAG2 <<<<<FUS3--------->O2             <---------ZAT14     --------->TOE1(3)         ---------->DOF2    - <<<<<ABI3<---------PIF3(3)       ----------->HVH21    --------->TOE2(3)      <----------ID1       --   catgggagtgccacgtggcatgtggagaagttgccagtgaacgagttattctctctacctcaacgtcactaaaaccgaatgcgaaaaggaaaaaaaatag  9280900                                 <------ZmHOX2a(2)                                 ===============================HOX2a_HOX2a                                <---------ARR11(3)                                --------->ARR11(3)                      --------->ARR14(2)                      <---------GLK1(2)                                  ---------->ID1 --------->ANAC58     <---------ARR14(2)    --------->ANAC58   ---------->DOF2 --------->ANAC58    <------ZmHOX2a(1)      --------->ANAC58  <---------REM1(1)              <------- ----------------------->ANAC81--------->GLK1(1)            --------->At4g35610              <------- -------->DOF2       ===================HOX2a_HOX2a      <------ZmHOX2a(1)  ------>ZmHOX2a(1)<-------   caaaagcaaaaaactaaaacagaggattctcagagatcacgagagcaagaaaacgatgaggaagatgaagcacttgtcctccattgcaaacgatgtcgtt  9281000                                                             <---------WOX13(1)                                                          <---------YAB1                                                  ------>ZmHOX2a(2)                                                 <------ZmHOX2a(2)                        <---------ICU4                                                --------->ARR14(2)                       --------->ICU4                                                <---------ARR11(3)                       <---------YAB1                                                --------->ARR11(3)                     --------->YAB1                                                <---------ARR14(2)            --------->ZAT14                                                <-----------ARR10             <---------ZAT18 --ANAC58                                       <---------AGP1                <---------ZAT14 --ANAC58             <-----------GT1           --------->AGP1                --------->ZAT18-------- --ANAC46         <----------DOF2              <---------CCA1(2)        --------->YAB1<------ZmHOX2a(2)   cagagatgctcacagtatttcttttctccttgtctatatacttatttgcagatctatgttttgattaatagaaattatagtgtactggatcataatcaaa  9281100                                                                          --------->LBD16                                 --------->TOE2(3)                      <---------LBD16                                 <---------ANAC58                    <---------ALFIN1                                 <---------ANAC58                 <---------ARR14(2)                                ----------------->AGL1            --------->ARR14(2)                               <-----------------AGL1            <-----------HVH21                            <----------DOF2      ---------->DOF2----------->GT1                        --------->GLK1(1)   --------->ANAC58 --------->MYB52(1)                        <---------GLK1(1)   --------->ANAC58--------->MYB52(1) ->YAB1         <---------AHL20(2)        ---------->DOF2--------->At4g35610                       --   atcatggaagtcaaacaatttatgggatttcttttccttgatggtaaagccaaaagaacagcaaaccggttacacccggtttagcatcgttttaatctat  9281200                                                                                                <----                                                                                             <------MYB83                                                                                        --------->ANAC58                  <---------REM1(1)                 <---------ZAT6                      --------->ANAC58               <-----------RAV1(1)           --------->ATHB12                          <---------LBD16              <---------TOE2(3)             <---------YAB1                        ---------->DOF2         --------->ATHB12             --------->ATHB12---------->DOF2          <-----------RAV1(2)        <---------YAB1  --------->ZAT18    <---------TOE2(3)                --------->ANAC58 <------MYB46(1)        --------->ICU4  <---------ZAT18   --------->YAB1        <---------AtLEC2  <------ZmHOX2a(1) ----->TEIL<---------WOX13(1)        --------->MYB46(3)    --------->GLK1(2)--------->ANAC58---------   gaattttgtgatgattgatgttgtagggaactagagacaaccattgatgatttagtgaaagaatttgaatgtcaatggaagccaggaagcacgggaggta  9281300  Previous    Next  AGI:  At2g21710.1    Description:  EMB2219 (EMBRYO DEFECTIVE 2219). similar to mitochondrial transcription termination factor family protein / mTERF family protein [Arabidopsis thaliana] (TAIR:AT4G02990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47626.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690) Range:  from: 9277966    to: 9280498    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g21720.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G23390.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79515.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67487.1); contains InterPro domain Protein of unknown function DUF639 (InterPro:IPR006927) Range:  from: 9280776    to: 9283882    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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