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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                 <---------MYB111(2)
                                 <---------MYB46(2)
                                 <---------MYB111(1)
                                 <---------MYB52(2)                             --------->STY1(2)
                                 <------------MYB.PH3(2)                        <---------STY1(2)
                                 <---------MYB59                          --------->WRKY38(1)
                               ------>MYB46(1)                         --------->DEAR3(1)
                               --------->MYB52(1)                     <------NtERF2
                           ------->TEIL                  --------->ARR14(2) <---------ANAC58
                  <---------ANAC46   --------->ZAT6  --------->ZAT2  ------>NtERF2
                 ---------->ID1------>MYB83<---------ZAT6<---------ARR14(2) <---------ANAC58       <
              <---------DAG2 <---------MYB111(1)     <---------At4g35610 <---------MYB52(1)        -
              <----------DOF2<---------MYB46(2)      --------->At4g35610<-------GAMYB              -
--YAB1   <---------At4g35610 <---------MYB59<---------ZAT18          <---------RAP2.3(1)        <---
 
ccagccatcttcttctgcttttcgtttatcaacctaactaactctagtgcaaattcagcagacctgtttttgcgccgttgcctagctacttccacagtga  9277300
                                                                                                <---
                                                                                                ----
                                                                                                <---
                                                                                               -----
                                                                                 ----------->GT1----
                                                                                 --------->ANAC58
                                               <---------YAB1                    --------->ANAC58
                                               --------->ICU4                  ---------->DOF2 <----
                                             --------->YAB1                 --------->LBD16    -----
      --------->TOE1(3)                      <---------ICU4              ------>ZmHOX2a(1)     <----
      --------->TOE2(3)                     <---------YAB1            <-----------GT1         <-----
   ----------->RAV1(1)                <-------TEIL                   <-----------GT1          <-----
 ------>ZmHOX2a(2)                  <-------PIF5                 --------->ARR11(3)      <---------ARR14(2)
<------ZmHOX2a(2)                   ------->PIF5<---------ICU4   <---------GLK1(2)       --------->ARR14(2)
---------ARR14(2)                  --------->ANAC46    --------->At4g35610  --------->HSFB2a(2)-----
------>TEIL                      <---------ALFIN1      <---------At4g35610  ------>ZmHOX2a(1) <-----
-------->ARR14(2)      <---------HSFB2a(2)<---------ICU4         <---------ARR11(3)     <---------GLK1(1)
------WOX13(1)         --------->HSFB2a(2)--------->YAB1  <-----------HVH21 <---------HSFB2a(2)<----
 
tggatccaacattaacacatttacttcgagactcttccacgtccataatcataatggcatctgtcatagatttttcctcctcgaaagtaacaaatccgaa  9277400
      <----------DOF2
------HSFB2a(1)
----->HSFB2a(1)
------HSFC1(2)
---->ARR14(2)
----->HSFC1(2)                                                                          --------->DAG2
-----ARR14(2)                     <---------------------WRI1                           ---------->DOF2
---->GLK1(2)                  <---------ARR11(3)                                    --------->YAB1
-----ARR11(1)         ------>ZmHOX2a(2)                                             --------->AHL20(2)
----CCA1(2)           --------->YAB1                                          ----------->RAV1(1)
----GLK1(2)          <------ZmHOX2a(2)         ----------->GT1           --------->GLK1(1)
-->TEIL >>>>>>>>>>>>>>>>>LFY  --------->ARR11(3)                        --------->ARR11(3)
----ARR14(1)      <---------YAB1 ----------->GT1                <---------ATHB12 --------->YAB1
-------ARR10  <-----------HVH21 ------>ZmHOX2a(2)      --------->YAB1   <---------ARR11(3)       ---
 
tcttcttgactttccagtgtcacgatcgtaaatgatctgtgaaaaaaacatagaaaaatcaaaacaaatcagtaagaactccaacaataaaaaagttgat  9277500
                  --------->YAB1
                 <-------TEIL
              --------->GLK1(1)
             <---------ARR11(3)
             --------->ARR11(3)
             <---------ARR14(2)         <---------TOE1(3)                                         --
             --------->ARR14(2)         <---------TOE2(3) ------->GAMYB                           <-
            ===================HOX2a_HOX2a--------->ARR11(3)                --------->O2        ----
            <------ZmHOX2a(1)--------->YAB1              <------------MYB.PH3(1)  <---------------AGL15
        ---------->DOF2      --------->TOE2(3)         <---------DOF5.7(2)  <---------O2        <---
    <---------ANAC55(2)   --------->WOX13(1)           --------->MYB52(1)<------ZmHOX2a(2)      ----
-------------->AGL1     <------ZmHOX2a(2) <-----------HVH21   <----------DOF2    ----------------->AGL1
 
accaaaaacgtgaaaggatattcatagatcaatctcaattcttaaggtcatgtatagataacggactttagaatcgatcacgttgccaaactttgaaaat  9277600
          <----------DOF2
         ------>ZmHOX2a(2)
         ========================HOX2a_HOX2a
        =========================HOX2a_HOX2a
        <---------RVE1(1)
        <------ZmHOX2a(2)
       --------->ARR14(3)
       <---------ARR14(3)
       <---------ARR11(3)
       <---------ARR14(2)
       --------->ARR14(2)
       --------->AGP1
       --------->ARR11(3)
     ----------->ARR10
    --------->SPL7
   <---------MYB52(1)
  --------->LBD16                                                                                  -
 --------->ANAC55(2)                                                                              --
 --------->ANAC46                            --------->ANAC58                                   ----
------->ARR14(2)                      <---------MYB52(2)                              --------->CCA1(2)
--------ARR14(2)                      --------->ANAC58                               --------->ARR11(3)
----->ARR11(3)                        --------->ANAC58                               <---------ARR11(3)
------ARR11(3)            --------->ICU4     --------->ANAC58                  ---------->DOF2 -----
----->AHL20(1)            ------>ZmHOX2a(1)---------->DOF2          >>>>>>>>>>>>>>>>>LFY    --------
 
atatccgtaagatctttttcatcggtgtcctgatcaagaccacgaacaaagcaagtgtattcaacatttgtagccattgtttgaaagagatatatcaaag  9277700
                                                                                                  <x
                                                                                                  <x
                                                                                                 <xx
                                                                                                 <xx
                                                                                                <xxx
                                                                                                <xxx
                                                                                               <xxxx
                                                                                             <xxxxxx
                                                                                            <xxxxxxx
                                                                                            <xxxxxxx
                                                                                            <xxxxxxx
                                                                                            --------
                                                                                        <---------MYB59
                                                                                    <xxxxxxxxxxxxxxx
                                                                                  <xxxxxxxxxxxxxxxxx
                                                                                  <xxxxxxxxxxxxxxxxx
                                                                               >>>>>>>>>>>>>>>>>LFY
                                                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                                                         <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                                                                         <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                                                                       <---------ARR14(2)  <xxxxxxxx
                                                                       --------->ARR14(2) --------->MYB52(1)
                                                                     <xxxxxxxxxxxxxxxxxxsmallRNA(si3)
-------->DAG2                                                   xxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxx
-------->DOF2                                                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
----->ARR11(3)                                                  <--------P   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
---->YAB1                                  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)<xxxxxxxxxxxxxxxxxsmallRNA(se3)
-->DOF2                          --------->AHL20(2)       <xxxxxxxxxxxxxxxxxsmallRNA(fl3)------>ZmHOX2a(1)
 
ataaagtataggttctaccgagcccaaaaaatgcaaaaatataggttctaccgagaattgaactcgggttactggattcagagtccaatgtcctaaccgc  9277800
                       <---------MYB59
                     <-----------ARR10
                     ------->TEIL
                     --------->ARR14(2)
                     <---------ARR11(1)
                     <---------ARR14(2)
                    <---------CCA1(2)
                  <---------ANAC58
                  <---------ANAC58
                  --------->ANAC58
                  --------->ANAC58
                  <---------ANAC55(1)
xxxxxxxxxxxxxxsmallRNA(si3)
xxxxxxxxxxxxxxsmallRNA(le3)
xxxxxxxxxxxxxxsmallRNA(i)
xxxxxxxxxxxxxxsmallRNA(s)
xxxxxxxxxxxxxxsmallRNA(si3)
xxxxxxxxxxxxxxsmallRNA(fl3)
xxxxxxxxxxxxxxsmallRNA(se3)
xxxxxxxxxxxxxxsmallRNA(fl3)
xxxxxxxxxxxxxxsmallRNA(se3)
xxxxxxxxxxxxxxsmallRNA(si3)         --------->AHL20(2)
xxxxxxxxxxxxxxsmallRNA(fl3)         <---------AHL20(2)
->MYB46(3)   *TSS --------->ANAC55(2)     <-----------GT1
xxxxsmallRNA(se3) <---------ANAC55(2)     <---------YAB1                    <----------DOF2
xxxxsmallRNA(se3) --------->ANAC55(1) <-----------TBP                      <---------ANAC58
xxxsmallRNA(se3) <-------TEIL      <---------AHL20(2)                      <---------ANAC58
xxxxxxxxxxxxxxsmallRNA(s2)      --------->AHL20(2)                      <---------MYB52(1)         <
xxxxxxxxxxxxxxsmallRNA(se3)    <---------YAB1     <---------AHL20(2)  <---------MYB46(3) <----------DOF2
 
tagaccatagaaccaattgatacgtatctaacttattatttatttatacttgttttatttcatcttctccgagccgttgctttgctctatctcttttcca  9277900
                                                                                   <---------At4g35610
                                                                                   --------->At4g35610
                                                                                  --------->MYB52(2)
                                                                               --------->TOE2(3)
                                                                               --------->TOE1(3)
                                                                          --------->ZAT14    -------
                   --------->At5g28300                                    <---------ZAT14    -------
              --------->ZAT14                 ------>NtERF2           <---------ALFIN1      --------
              <---------ZAT14                --------->ANAC46        <---------ZAT14      --------->REM1(1)
             <---------MYB52(1)              <---------ETT(1)   <---------ANAC58<---------MYB52(1)
     <----------DOF2   <-----------GT1       ----------->HVH21  <---------ANAC58--------->DOF5.7(2)
-----------GT1--------->WRKY38(1) ------------>CBF       <----------DOF2--------->ANAC46  <---------ALFIN1
 
ttttactactttctccgttcactgtaaaaccatctctctcaattctctccgacaacgttgctctaatgcttctccactgcaacgttagctactacacctc  9278000
                                                                        <---------ATERF1(2)
                                                                        --------->RRTF1(3)
                                                                        --------->ANAC46
                                                                        --------->DEAR3(1)
                                                                        --------->RAP2.3(2)
                                                                        --------->RRTF1(2)
                                                                        --------->ATERF1(2)
                                                                        --------->RAP2.6(2)
                                --------->ANAC58                        --------->DREB2C(2)
                            ------>NtERF2                               --------->RAP2.3(3)
                            <---------RAP2.6(3)                        --------->ATERF1(1)
                            <-----------HVH21                          <------NtERF2
                           --------->DEAR3(1)                          --------->ERF1
                           --------->ATERF1(2)                         --------->DEAR4(2)
                           --------->RAP2.6(2)                         --------->ORA47(2)
                           <---------ATERF1(2)                         --------->RRTF1(1)
                           --------->RRTF1(3)                          --------->RAP2.3(1)
                           --------->RAP2.3(2)                        <---------ATERF1(1)
                           --------->RRTF1(2)          <---------ARR11(3)  ----------->RAV1(1)
                           --------->RAP2.3(3)         --------->ARR11(3) <------NtERF2
                          --------->RRTF1(1)           <---------ARR14(2)<---------ATERF1(1)
                          --------->ERF1             --------->ANAC58 ------>NtERF2
                          --------->RAP2.3(1) <---------ARR14(2)      <---------RAP2.3(1)
                         --------->LBD16 --------->DEAR3(1)         --------->ATERF1(1)
                         <---------ATERF1(1)  --------->ARR14(2)   <---------ATERF1(1)--------->ARR14(2)
                        --------->ANAC46--------->RAP2.3(1)        <-----------HVH21  <---------ARR14(2)
                  <---------CCA1(2)    ------->GAMYB --------->ANAC58<---------DEAR3(1) <-------TEIL
     --------->TOE2(3)  --------->DEAR3(1) <------NtERF2 <-------TEIL--------->DEAR3(1)<------ZmHOX2a(2)
-->TOE2(3)     ------>ZmHOX2a(1)--------->ANAC58 <-----------GT1  --------->ANAC46    <---------ARR11(3)
-->AtMYB61<---------At4g35610<------NtERF2------>NtERF2--------->ARR14(2)--------->ABI4(1)    <-----
->ANAC46--------->REM1(1)------>NtERF2--------->DEAR3(1)--------->CCA1(2)------>NtERF2--------->AGP1
 
aacgttttccttcatctcctcatctctccgccgtcaagacaacgccgacgattcacaagatacagtaatccgtcgccgccacaatgctagatccatttct  9278100
                                                                                     <------NtERF2
                                                                                   <---------DEAR3(1)
                                                                                  <---------LBD16
                                                                                  --------->At4g35610
                                                                                  <---------At4g35610
                                                                                  --------->LBD16
                                                                                  ------>NtERF2
                                                                                <---------LBD16
                                                    --------->ANAC58           ------>ZmHOX2a(1)
      --------->LBD16                               --------->ANAC46          <---------ALFIN1
      ------>NtERF2                                 --------->ANAC58        ------>ZmHOX2a(1)
     --------->RAP2.6(2)                      ------->TEIL               ------>ZmHOX2a(1)
     ------->GAMYB  <---------MYB59           --------->GLK1(2)         <---------ALFIN1
     --------->ANAC46                        <---------GLK1(2)        ------>ZmHOX2a(1)
     --------->ANAC58                        <---------ARR14(1)      <xxxxxxxxxxxxxxxxsmallRNA(se3)
     --------->ANAC58                    --------->MYB52(1)          <---------ALFIN1------>NtERF2 -
    --------->MYB46(3)---------->DOF2 --------->TOE1(3)            ------>ZmHOX2a(1)------>NtERF2 --
------GT1 --------->ICU4              --------->TOE2(3)   --------->TOE2(3)<---------ALFIN1      <--
 
ctatacatccgccataatcgagacctaaagctcaacaaaaaccctaacgaatctcaagaaacctttgttcctcctcctcctcctccgcggcgagatttag  9278200
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AGI:  At2g21690.1   
Description:  RNA-binding protein, putative. similar to ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8), RNA binding [Arabidopsis thaliana] (TAIR:AT4G39260.2); similar to ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8), RNA binding [Arabidopsis thaliana] (TAIR:AT4G39260.3); similar to ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8), RNA binding [Arabidopsis thaliana] (TAIR:AT4G39260.1); similar to putative glycine-rich RNA-binding protein [Dianthus caryophyllus] (GB:BAF34340.1); similar to Glycine-rich RNA-binding protein GRP2A (GB:P49311); similar to S
Range:  from: 9277194    to: 9277677    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At2g21700.1   
Description:  pre-tRNA. tRNA-Gln (anticodon: CTG)
Range:  from: 9277743    to: 9277814    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At2g21710.1   
Description:  EMB2219 (EMBRYO DEFECTIVE 2219). similar to mitochondrial transcription termination factor family protein / mTERF family protein [Arabidopsis thaliana] (TAIR:AT4G02990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47626.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690)
Range:  from: 9277966    to: 9280498    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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