Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        <---------DAG2                                --------------->AGL15 -------->ANAC58                                    <---------------AGL15 -------->ANAC58                                   <-----------------AGL3 -------->ANAC46                                   ----------------->AGL3 ---------ALFIN1                                   <-----------------AGL2 -------->RAV1(1)                                 --------->At4g35610                             --- -------ALFIN1                       <-----------HVH21                                    ----------- ->GAMYB                <---------ICU4        --------->ANAC58      <---------LBD16       =========== -->MYB46(3)            --------->ZAT6        --------->ANAC58     --------->ALFIN1     <---------ALFIN1 >P   <----------DOF2  <---------ATHB12     ---------->DOF2----------->GT1----------->GT1 --------->At4g35610   ccacacaacttttgcgataaaactaatcactacaagagttgtcactgaaagcatctaaaaatggttaagttggggaatgcaaaaaacttcacacctgaaa  9165100                                                               --------->YAB1                                                              <---------YAB1                                                            --------->ATHB51           ----------->GT1                                                           <---------YAB1              --------->YAB1                                                         <---------AHL20(2)  <--------HAHB4   ---------->DOF2                                <-----------GT1<---------YAB1      <------------CBF -------->RAV1(1)                                <---------AHL20(2)         <---------YAB1 >RAV1(2)                                        --------->AHL20(2)      --------->MYB46(3)        -- =========RAV                           <---------LBD16 --------->AHL20(2)--------->YAB1    ---------   ccacataaagactactaaacccctacaaatttctagttatattcagggtatttaactatttattattgtaattgaaccatcatttagtattgtaattttt  9165200                                    --------->AHL20(2)                                  --------->TOE2(3)                           --------->AHL20(2)                           --------->YAB1                          <---------ATHB12                         ------>MYB83                         ------>MYB46(1)                                               --------->ANAC58                        --------->WOX13(1)                     <----------DOF2         --------->ANAC58    --------->MYB46(3)------------>CBF                   --------->YAB1               --------->DAG2  <-----------GT1 --------->At4g35610                  ------------>CBF    --------->YAB1          -- ------------->AtSPL8-------->P <-------TEIL<----------DOF2 <---------ARR11(3)       ---------->DOF2- >ICU4            <---------At4g35610  ---------->DOF2--------->YAB1  <---------MYB52(1)  ---------->DOF2   gtttgaaccacttaaactgtagctaccaatcaaattcattaaaaagctttaaaaaataacaataactttccagttattcatagaaggaaaagcaaagaac  9165300                                                                                     <--------HAHB4                                                                                     -------->ATHB1                                                                                     --------->AHL20(2)                                                        <----------ID1               <---------AHL20(2)                                           --------->ANAC58             --------->ARR11(3)                                           ------------------------>ANAC81      ------------>CBF   <-                                           --------->ANAC58             <---------ARR11(3) <---------    ---------->DOF2     <---------DAG2   <------ZmHOX2a(1)           <---------DDF1  --------->ATHB51 --------->TBP          <----------DOF2<---------------------WRI1   <---------ETT(2)--------->ICU4 -- -------->YAB1    <----------DOF2  ---------->DOF2---------->DOF2   --------->ETT(2)<---------ATHB51   tataaaaaaagacttattctctttctctttttgtacataaagaggaagcaaacaaagagagccaaaatggtcgacatcttctaacaattatttatactaa  9165400                                                                            <---------YAB1                                                                          --------->YAB1                                                                         <---------YAB1                                                                       --------->YAB1                                                                      <---------YAB1                            <---------AHL20(2)                      --------->YAB1                            --------->AHL20(2)                     <---------YAB1                            ----------->TBP                        --------->ICU4                          --------->AHL20(2)                     --------->YAB1                          <---------AHL20(2)                     -------->HAHB4  <---------AHL20(1)      ----------->TBP                        <---------ICU4  --------->ARR11(3)    ----------->TBP     <---------AHL20(2)  <---------YAB1 --------AHL20(2)     <-----------TBP    ------->TEIL           <---------ATHB12               <----- --GT1       <---------CCA1(2)       ------->MYC3               --------->ICU4    ----------->GT1 ------->AHL20(2) <---------YAB1     <-------MYC3        <------NtERF2--------->ICU4           ------   attatatattcacacatatcatgcttatatatatatacacatgtatataatgggaaggcagaggtaatgatgatgatgataatggggagaaaatgtgaag  9165500                                    --------->At4g35610    ---------->DOF2                            <---------ZAT14            <---------ARR14(2)                         <---------ANAC58  --------->ARR11(3)                                    <--- <---------ANAC46        <---------ANAC46  --------->ARR14(2)                                    <--- ----YAB1                <---------ANAC58  <---------ARR14(2)                             --------->ZAT18 --->ICU4            <---------GLK1(2) <-------TEIL    --------->ARR14(2)                 <---------ZAT18   attgtgggaatcaagcgaagaaagattgtgtgtacatgagatgcagaacttgctgcaaatccaaagccttccattgccaaactcacatcaagagcacttg  9165600                 ------>ZmHOX2a(2)                <------ZmHOX2a(2)               --------->ARR11(3)               --------->ARR14(3)               <---------ARR11(3)        ------->GAMYB               <---------ARR14(2)       --------->MYB46(3)                                     <-----               --------->ARR14(2)  --------->ANAC58                                            <-----               <---------ARR14(3)------>MYB83                                               <--------   ------>ZmHOX2a(1)           --------->AtMYB61                               --------->MYB46(3)   ====================HOX2a_HOX2a --------->YAB1                   <---------YAB1--------->MYB46(3)   =====================HOX2a_HOX2a--------->ANAC58               --------->CCA1(2)   <----------DOF2 ------ANAC58  <---------AGP1  --------->MYB46(3)              --------->DAG2  --------->REM1(1) ------ANAC58  <-----------ARR10 ------>MYB46(1)             ---------->DOF2 ----------->RAV1(1)   --   ggttcctgcctatagaagatctcatcacaaacaccaatcgcaaccgctctctactagtatcccaaaaggtatgagagagcaacaacaactttcaaattct  9165700                                      <---------YAB1                                    -------->HAHB4       <-----------RAV1(2)          <---------ICU4    --------->REM1(1)               --------->YAB1              <---------AHL20(2)  ------>ZmHOX2a(1)   ------>ZmHOX2a(1)                        <---------AHL20(1) ----ANAC58 <-------TEIL           --------->ICU4              <---------AHL20(2) ----ANAC58<---------ARR11(3)   --------->AHL20(2)             --------->AHL20(2) -GLK1(2) <---------GLK1(2)    --------->AHL20(2)     <---------AtLEC2 -------->ID1  <---------CCA1(2)<---------AHL20(2)   <-------TEIL                    --------->At4g35610   tgtccttcatcaggttcttatctcctactcttatttaattatgctcatgtataagtgcatgttaatttttttctctcaccataaaacatctgaatttttg  9165800                                                                       ------>ZmHOX2a(2)                                                                      <---------GLK1(1)                                                                      --------->GLK1(1)                                                                      <------ZmHOX2a(2)                                                                     <-----------ARR10                                                                     --------->ARR14(2)                                                                     <---------ARR14(2)                                                                     <---------AGP1                                                             <---------GLK1(2)                                                             <---------ARR11(3)                                                       --------->CCA1(2)            <-----------GT1                                                  ----------->GT1<---------LBD16--------->TOE2(3)                                            ---------->DOF2----------->ARR10  ------->TEIL      -----                                           ------>ZmHOX2a(1) --------->ARR11(3) <----------DOF2<-----                                           ==================================HOX2a_HOX2a       <-----                                           ===================================HOX2a_HOX2a     -------  <----------DOF2           <---------AHL20(2)   --------->CCA1(2)  <---------CCA1(2)         <------   gggtctttcaaatttcatttcatttctgagttaattgtatatgtcctaaagatagagaaatgagattttcggatctcatgaactttaaacaagacttgct  9165900                                                                                                 <---               --------->ZAT6                                                                    <---              <---------ZAT14                                                                   <----          --------------->AtSPL8                   <---------YAB1                        --------->ANAC58          <---------ICU4                 <-------GAMYB                                   <---------TOE2(3)          <---------------AtSPL8         <---------ZAT14                 <---------AHL20(2)     ----- ---------->AGL15--------->ANAC46     <---------ANAC58                   --------->AHL20(2)<------ZmHOX2a(1) ----ANAC58   --------->ZAT14         <---------ANAC58        ------>ZmHOX2a(2)          --------->ANAC58 ----ANAC58   <---------ZAT18         <---------ANAC46      --------->ARR11(3)     <---------ATHB12 -->STY1(2)   --------->ZAT18  ------->TEIL<---------ANAC46 <---------ARR11(3)   --------->WOX13(1) ---STY1(2)   <-------TEIL <---------TOE2(3)    --------->ICU4====================================HOX2a_HOX2a   agtaagtgcaaataagtacactacatattgatgtatccttgtgtgttgtgatgatgtttagtgatctatgtctatttttatatcaatcgataaggaatta  9166000  Previous    Next  AGI:  At2g21400.1    Description:  SRS3 (SHI-RELATED SEQUENCE3). similar to SHI (SHORT INTERNODES), transcription factor [Arabidopsis thaliana] (TAIR:AT5G66350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61060.1); contains InterPro domain Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511); contains InterPro domain Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510); contains InterPro domain Protein of unknown function DUF702 (InterPro:IPR007818) Range:  from: 9165470    to: 9166781    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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