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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
------>
ZmHOX2a(1)
--------->
LBD16
--------->
At4g35610
--------->
ANAC58
----------->
RAV1(2)
<-----------
GT1
<---------
ATHB12
<---------
At4g35610
<----------
DOF2
------>
MYB46(1)
<---------
At4g35610
<-----------
HVH21
---------
-->
DAG2
--------->
ANAC58
------>
MYB83
<---------
ATHB12
<<<<<<<<<
SUP
----------------
-->
DOF2
--------->
ZAT2
--------->
MYB46(3)
------->
TEIL
----------->
HVH21
<----------
DOF2
----
tgagtctttatac
cagcacgaagtctctgaaccaatcgtctccctatgaatccagttgctccagttactgacactgtcatctgactttc
ctgaattgaaa
9119400
<---------
MYB59
>>>>>>>>>
MYB2
--------->
KAN4(2)
<---------
AHL20(2)
<---------
ARR11(3)
-->
GT1
------>
MYB83
<---------
YAB1
<-----------
GT1
--------->
ARR11(3)
->
AGL1
------>
MYB46(1)
<---------
AHL20(2)
<---------
CCA1(2)
------>
DOF2
<---------
KAN4(1)
--------->
AHL20(2)
--------->
YAB1
---------->
DOF2
aaagaaaaccaaactttgaacattctctatcaactaaacattttaattctcaaactcttaactattttcatacttgtagcttaaaaagatactacaatac
9119500
--------->
ANAC46
--------->
LBD16
--------->
LBD16
<---------
HSFB2a(2)
--------->
HSFB2a(2)
--------->
HSFB2a(2)
<---------
HSFB2a(2)
--------->
ANAC58
<---------
ANAC58
--------->
ARR11(3)
----------->
GT1
<---------
ANAC46
<---------
ARR11(3)
------->
TEIL
--------->
At4g35610
<---------
ANAC58
<-----------
GT1
<---------
ZAT14
<---------
At4g35610
<---------
LBD16
--------->
AHL20(2)
--------->
ZAT14
<-----------
HVH21
--------->
ANAC58
aagtcttccgggtgaagagattgaaatgaaatac
cttctgggaactacacagaaccatgaatctccttgtccctggcat
ctaaaaaccaagtaaaaatcc
9119600
<---------
AHL20(2)
<---------
AHL20(2)
----------->
RAV1(1)
--------->
ANAC55(2)
--------->
ANAC55(1)
--------->
TOE1(2)
<---------
ANAC55(2)
--------->
MYB52(1)
--------->
ANAC58
--------->
TOE1(2)
<---------
ATHB12
--------->
MYB46(3)
--------->
WOX13(1)
--------->
TOE2(3)
<---------
MYB52(2)
<---------
YAB1
--------->
ANAC46
--------->
YAB1
--------->
LBD16
--------->
YAB1
--------->
ANAC58
------->
TEIL
<---------
LBD16
-----
<---------
YAB1
<---------
ATHB12
--------->
AHL20(2)
<----------
ID1
--------->
SPL7
=====
aaaatttgatcattcatgagtaatcaatcacgcaacaaattaaatgaatgttaacataaaaaaaacaaaatttgcatac
ggagaacgaacgagggactaa
9119700
<---------
ANAC46
--------->
ALFIN1
<---------
MYB46(3)
--------->
ALFIN1
<------
MYB83
<---------
AtMYB61
<---------
TGA1a
--------->
ZAT6
<---------
O2
--------->
At4g35610
<---------
DOF5.7(2)
---------->
DOF2
<---------
At4g35610
--------->
DOF5.7(2)
=================
bZIP_DOF
--------->
TOE1(3)
<------
ZmHOX2a(1)
<---------
ZAT2
--------->
TOE2(3)
--------->
At4g35610
<------
ZmHOX2a(1)
--------->
At4g35610
<-------
GAMYB
<---------
MYB46(3)
--------->
At4g35610
--------->
ALFIN1
<------
MYB46(1)
------>
ZmHOX2a(2)
----->
DOF2
<------
ZmHOX2a(1)
<---------
DEAR3(1)
<---------
At4g35610
*
TSS
==========================================
bZIP_DOF
--------->
At4g35610
--------->
ATHB12
aagagcagaagagagagcgaaggaggaggaaagagacgttggtgagcagagaagctccat
cgtttcgctgaaactgatcgttaacagt
gagtggtggaga
9119800
--------->
ANAC58
<---------
YAB1
--------->
ANAC58
<---------
ICU4
--------->
ANAC46
<--------
HAHB4
<---------
LBD16
--------->
ICU4
<---------
ANAC46
<---------
YAB1
--------->
ANAC46
<------------
CBF
<---------
ICU4
<-------
TEIL
<---------
AtLEC2
--------->
ATHB12
--------->
YAB1
--------->
ARR14(2)
--------->
ICU4
<-------
TEIL
<---
<---------
ARR14(2)
---------->
DOF2
<----------
DOF2
--------->
ATHB51
<---------
ZAT6
----
cacatatacgtcgtattttgcacggagacaacttaaaggcccttattgggctttgttgatattcattattaaggcccatttagtcttatttctggtccat
9119900
<---------
DEAR4(2)
<---------
ORA47(2)
<---------
ATERF1(1)
<---------
RAP2.3(1)
<---------
RAP2.3(2)
<---------
RAP2.3(3)
<---------
RRTF1(2)
<---------
MYB46(3)
<-----------
RAV1(1)
<---------
AtMYB61
<---------
DEAR3(1)
<------
NtERF2
<---------
DEAR3(1)
<---------
ERF1
<---------
ABI4(1)
<---------
ORA47(2)
---
<---------
RAP2.3(1)
---
------>
NtERF2
--------->
SPL7
---
--------->
ATERF1(2)
---
<---------
RRTF1(2)
---
<---------
RAP2.3(2)
<--
<---------
DREB2C(2)
---
<---------
DEAR3(1)
<------
NtERF2
<---------
ANAC46
<---------
RAP2.6(2)
<---------
RAP2.3(3)
--------
<------
ZmHOX2a(1)
<---------
RRTF1(3)
------>
NtERF2
*
TSS
<---------
RAP2.6(2)
------>
NtERF2
<---------
WOX13(1)
<------
ZmHOX2a(1)
<---------
ATERF1(2)
<---------
ANAC46
<------------
CBF
--------->
ALFIN1
<------
ZmHOX2a(1)
--------->
ALFIN1
<--
<---------
AHL20(2)
<------
ZmHOX2a(1)
---------->
DOF2
--------->
ATERF1(1)
<------
NtERF2
----
MYC3
--------->
ATHB12
--------->
ALFIN1
--------->
ALFIN1
--------->
ATERF1(1)
--------->
ATERF1(1)
--->
MYC3
<---------
YAB1
--------->
CCA1(2)
--------->
ALFIN1
--------->
ALFIN1
--------->
ALFIN1
--
gtgtttaatctttgattgaagtctgagagacggaga
ggaggaggacgagagtgtgtgagaaagaggag
atggcggcgatgcagtggtgcggcgcgatgac
9120000
--------->
ARR14(2)
<---------
ZAT2
--------->
ZAT2
<---------
ZAT14
<---------
At4g35610
--------->
ALFIN1
<---------
ICU4
--------->
ALFIN1
--------->
YAB1
<---------
TGA1a
--------->
ICU4
----------->
RAV1(2)
<---------
ANAC46
<-----
<---------
YAB1
--------->
At4g35610
<---------
O2
------
<---------
GLK1(2)
--------->
ARR11(3)
--------->
TGA1a
--------->
ARR14(2)
-------->
HVH21
<---------
ARR11(3)
<---------
ANAC58
<------
NtERF2
------>
ANAC58
----------->
ARR10
<---------
ANAC58
<---------
DEAR3(2)
------>
O2
<---------
ZAT18
------>
NtERF2
<---------
DEAR3(1)
------>
TGA1a
<---------
MYB52(2)
--------->
LBD16
------>
NtERF2
------>
ANAC58
<---------
At4g35610
--------->
ANAC46
--------->
LBD16
-------
TGA1a
<------
NtERF2
<---------
ZAT2
<---------
DEAR3(1)
<---------
DEAR3(1)
------>
ANAC46
--------->
ANAC46
--------->
At4g35610
<---------
MYB52(1)
<---------
At4g35610
--->
HVH21
<---------
TGA2(2)
<---------
At4g35610
--------->
DOF5.7(2)
<---------
ARR14(2)
-------
O2
----------->
TGA1
--------->
ZAT2
--------->
TOE2(3)
--------->
At4g35610
------->
MYB52(1)
--------->
At4g35610
<---------
DEAR3(1)
<---------
LBD16
<---------
LBD16
acgacggattatgatgacgcagcgaacatctgcagctctgaattgttcggcgaggtattcatcgttatctccggcgtgtgcagctccggcggtatcggaa
9120100
--------->
HSFB2a(2)
<---------
HSFB2a(2)
--------->
ALFIN1
<---------
SPL7
<---------
ANAC58
------>
ZmHOX2a(2)
<---------
ANAC46
<---------------
AtSPL3
<-----------
RAV1(1)
<-------
TEIL
--------->
SPL7
<---------
WOX13(1)
<---------
ANAC58
<-----------------------
TaNAC69(2)
<---------
ARR14(2)
--------->
ATHB12
<---------
GLK1(1)
<----------
ID1
--------->
CCA1(2)
--------->
GLK1(1)
<---------
YAB1
----
ARR14(2)
--------->
CCA1(2)
<----------
ID1
--------------->
AtSPL3
--------->
ANAC58
--->
ARR14(2)
<------
ZmHOX2a(1)
---------->
DOF2
<------
ZmHOX2a(1)
--------->
ANAC58
--
atggatttgtgtgggagaggagataagaagacgaagaaagggaaaagattcaaaggatcgtacgggaattcgagagggaagaaacagaagatgattgaga
9120200
<---------
TOE1(2)
<---------
At4g35610
------->
TEIL
--------->
ANAC58
<-----------
ARR10
--------->
At4g35610
----
--------->
ANAC58
--------->
AGP1
<---------
At4g35610
<----------
DOF2
---------->
DOF2
--------->
LBD16
<----------
DOF2
<---------
GLK1(2)
------>
ZmHOX2a(1)
------->
GLK1(2)
--------->
At4g35610
---------->
ID1
----------->
RAV1(2)
<-----------
GT1
-----
gaatcaaagacaagcttgagcttcccaggtctactccttggcctcttcctttcaagctcatctga
atctcttgttaggggttttctcctcttttgccaac
9120300
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AGI:
At2g21280.1
Description:
GC1 (GIANT CHLOROPLAST 1); binding / catalytic/ coenzyme binding. similar to terpene cyclase/mutase-related [Arabidopsis thaliana] (TAIR:AT4G33360.1); similar to terpene cyclase/mutase-related [Arabidopsis thaliana] (TAIR:AT4G33360.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO47253.1); contains InterPro domain Region of unknown function DUF1731 (InterPro:IPR013549); contains InterPro domain Conserved hypothetical protein, YfcH (InterPro:IPR010099); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040)
Range:
from: 9117394
to: 9119788
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At2g21290.1
Description:
Identical to 30S ribosomal protein S31, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q9SJU8); similar to unnamed protein product [Vitis vinifera] (GB:CAO47252.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75923.1)
Range:
from: 9119937
to: 9120411
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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