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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                             ---------->DOF2
                                                          ----------->RAV1(1)
                                                         --------->ANAC58
                                                         <---------ETT(1)
                                                         --------->ANAC46
                                                         ----------->HVH21    <---------ZAT14
                 ------->TEIL                       --------->ANAC46          --------->ZAT14
     <---------At4g35610                       --------->ARR14(2)             <-------TEIL
     --------->At4g35610            <---------YAB1<-----------GT1             <---------REM1(2)
     --------->ZAT2                <---------AHL20(2)    --------->ANAC58 --------->ANAC58
     <---------ZAT2 <---------YAB1 <---------AHL20(1)   --------->DEAR3(2)--------->ANAC58
---DAG2         <---------CCA1(2)  --------->AHL20(2)   --------->MYB46(3)--------------->AtSPL3
----DOF2    <----------DOF2       --------->YAB1--------->CCA1(2) --------->CCA1(2)            -----
 
tcattctcagctagactttgaatcttattgttttgcattataattgttcagatttacgacccgacaaagaaatgggaacggtacacagtccatggggatt  9075000
                                          <---------WOX13(1)
                                       --------->ICU4 <------MYB83
                                       <---------YAB1 <---------ANAC46
                                <-------GAMYB         <------MYB46(1)
                               --------->MYB55(2)    <---------AtMYB61                <---------YAB1
                               <---------MYB46(3) <---------ARR14(2)       <-------TEIL
                             <---------MYB52(1)   <---------GLK1(2)     --------->KAN4(1)
 <---------HSFB2a(2)       ------>ZmHOX2a(2)    ----------->ARR10       <---------HSFB2a(1)
 --------->HSFB2a(2)  <---------WOX13(1)--------->ATHB12      --------->YAB1<---------AtLEC2
---->AHL20(2)   <----------DOF2--------->MYB52(2) --------->ARR14(2)   <---------KAN4(2)
 
aattctggaccagaacatgcttttgatggatcgtttgttgacatgattgatcagatttggtgtaatagtagtggaatgttcatggcatttttaatgctca  9075100
                                                --------->MYB52(1)
                                               <---------ATHB51
                                               <---------AHL20(2)
                                             --------->YAB1
                                           --------->AHL20(2)
                    --------->ZAT14     --------->TOE2(3)                     <---------MYB52(1) <--
          --------------->AtSPL8<---------AHL20(2)                          --------->ANAC46  <-----
<<<<<<<<<TBF1 ------->TEIL      --------->AHL20(2)                 <----------DOF2          <-------
 
ttcttcttccctcaatgtaccattacactcgttttttaatttttcttaaaataatggaactgtttgatttctttagtacccgttattttgtgatttttca  9075200
                                                   --------->ANAC58
                                                   --------->ANAC58
                                                  --------->ZAT18
                                                  <---------ZAT18
                                                --------->ZAT18
                                     --------->AHL20(2)
                                     <---------AHL20(2)
                          <---------YAB1        --------->At4g35610
                      ------>ZmHOX2a(2)         <---------ZAT18
                     <------ZmHOX2a(2)          <---------ZAT14
                    <---------ARR11(3)          --------->ZAT14                              <------
                    <---------ARR14(2)          <---------At4g35610                       ----------
 ----------->GT1    <---------ARR14(3)     <---------YAB1                               <---------LBD16
 <---------ANAC55(2)--------->ARR14(3)   --------->YAB1                                 ----------->RAV1(2)
---------HVH21      --------->ARR11(3)  <---------YAB1                                  ============
----AtLEC2          --------->AGP1  --------->AHL20(2)      <---------TOE2(3)       --------->ARR14(2)
----GT1             --------->ARR14(2)--------->YAB1        <---------YAB1          <---------ARR14(2)
 
tgtcatgtgaaaatttagtatgagatcttgtgattacaaatttataatgagagcacacaaattaagaatgttagaaaccaatttgtgaatcccctgatgt  9075300
                       <---------AHL20(1)
                       <---------AHL20(2)
     ----------->RAV1(1) <------------CBF
    <----------ID1     --------->AHL20(1)
 --------->ANAC58      --------->AHL20(2)                             <---------MYB46(3)
 --------->ANAC58--------->ANAC58                                    <---------TOE2(3)
 --------->ANAC46--------->ANAC46                                    <---------YAB1
---ANAC46        --------->ANAC55(1)                     <---------ANAC58
->HVH21          --------->ANAC58                        <---------ANAC46                         *TSS
=================RAV  --------->AHL20(2)                 <---------ANAC58            <----------DOF2
 
atacaaggcaacaaaatcacacgaaataaattgagagaccagacaaaacgctgtcgttttgcgagggtttctatggttgtgttgttatcttttttttttc  9075400
                  ---------->DOF2
              <---------ZAT6
           xxxxxxxxxxxxxxxxx>smallRNA(si3)
       --------->AHL20(2)
       <---------AHL20(2)
      --------->AHL20(1)
      --------->AHL20(2)                                                          ----------------->AGL1
      <---------AHL20(1)                                                        <---------WRKY18(1)
      <---------AHL20(2)                                                       --------->WRKY45
     --------->AHL20(2)                                                        --------->WRKY12
     <---------AHL20(2)                                                        --------->WRKY38(1)
  <---------AHL20(1)                                                --------->ANAC58
  --------->AHL20(1)                                                --------->ANAC58
  --------->AHL20(2)                                       <---------YAB1  <-------TEIL
  <---------AHL20(2)          --------->YAB1           <---------ZAT14   --------->ARR14(2)
 --------->AHL20(2)       ---------->DOF2              --------->ZAT14   <---------ARR14(2)
 
agaaataaattaatttagtgtgaaagagcaaaagcataaatagcatcgagagagacactgttctcattcattcgcaaattcgttgaccatatttgataga  9075500
                                                                    <------MYB46(1)
                                                                   --------->MYB46(2)
                                                                   --------->MYB59
                                                                   --------->MYB111(1)
           ------->TEIL                                    <----------DOF2
        <---------YAB1                                ------>ZmHOX2a(1)    ------>ZmHOX2a(1)
      --------->YAB1                             <---------GLK1(1)<--------P                   <----
     --------->ICU4                              <---------At4g35610<------MYB83      <---------DAG2
--------->ANAC58                      ------>ZmHOX2a(1)  --------->At4g35610 <----------------------
--------->ANAC58             ------>ZmHOX2a(1)  ------->TEIL   <---------TOE2(3)      <----------DOF2
 
atcaagcgatgatgaatcttagggttttgttcctcgctctccttctccttgcatctcctctgcttcaaggtaggtctcctctctcttctctttttgtttt  9075600
                       <---------MYB52(1)
                    <-------TEIL
                    ------>ZmHOX2a(2)
                   <------ZmHOX2a(2)                                                         <------
                  <---------AGP1                                                             -------
                  <---------ARR14(2)                                                         <------
                  --------->AGP1                                                             <------
                  <---------ARR11(3)                                                         -------
                  --------->ARR14(2)                                          =====================HOX2a_HOX2a
              ------>ZmHOX2a(2)                                               ------>ZmHOX2a(2)-----
             <------ZmHOX2a(2)                                               ======================HOX2a_HOX2a
            --------->AGP1                                                   <------ZmHOX2a(2) =====
            --------->ARR11(3)                                   ==================================HOX2a_HOX2a
            <---------AGP1                             <-----------GT1      <---------ARR14(2)<-----
            <---------ARR11(3)                      <---------GLK1(1)       --------->ARR14(2)======
            --------->ARR14(2)                 <---------WOX13(1)------>ZmHOX2a(2)           -------
-------GT1  <---------ARR14(2)               --------->ATHB12   <---------GLK1(1)           <------ZmHOX2a(1)
--ANAC81   <---------CCA1(2)                <---------YAB1     --------->ARR11(3)       ---------->DOF2
 
tccattgattttgtagatctagatccgttttgtttccttcgcgttttctgattggatttcacatttgatctctgtttccgatctggtttcttaaaggatc  9075700
    <---------MYB52(1)                                                                             -
<---------DOF5.7(2)                                                                                <
---AGP1  ---------->ID1 ------>ZmHOX2a(2)                                                      -----
-->GLK1(2)             <------ZmHOX2a(2)                                                    <-------
---ARR14(2)           <---------ARR14(2)                                                    --------
---ARR11(3)           --------->ARR14(2)                                                 <-------GAMYB
-->ARR11(3) ------>ZmHOX2a(1)                         <----------DOF2                   --------->ALFIN1
->ZmHOX2a(2)==================HOX2a_HOX2a       --------->ZAT6                        <---------ANAC46
===================HOX2a_HOX2a        <---------At4g35610                             <---------ANAC58
-ZmHOX2a(2) --------->ICU4--------->LBD16     <-----------GT1                         <---------ANAC58
===================HOX2a_HOX2a        --------->At4g35610                           <---------ANAC46
-->ARR14(2) ===================HOX2a_HOX2a <----------DOF2                <---------AGP1<-----------RAV1(1)
 
tggtaacgttatgtccttattcatcgatccgagtgaaattgagctcctttaacaatactttgccttcgaacattgtagctctgtgttttgtgtgttgctg  9075800
   ------>ZmHOX2a(1)                                                                               <
-------->ARR14(2)               --------->TOE1(3)                                            <------
---------ARR14(2)               <----------DOF2                                        <---------AtLEC2
->NtERF2                  <-------TEIL                          <---------GLK1(2)      <---------ANAC46
--At4g35610              --------->CCA1(2)       --------->ARR14(2)                    <---------ANAC58
->At4g35610   ----------->GT1   --------->TOE2(3)<---------ARR14(2)                    <---------ANAC58
 
ccaatcctagagcaatgtggtttcaaagatacaaactttaaaacgtagatcgaatcccctagtaatagattcttcaatagtgtcttcgttgcatgtcttt  9075900
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AGI:  At2g21150.1   
Description:  XAP5 family protein. similar to XAP5 family protein [Brassica juncea] (GB:ABX10751.1); contains InterPro domain XAP5 protein; (InterPro:IPR007005)
Range:  from: 9072419    to: 9075174    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At2g21160.1   
Description:  translocon-associated protein alpha (TRAP alpha) family protein. Identical to Translocon-associated protein subunit alpha precursor [Arabidopsis Thaliana] (GB:P45434;GB:Q94A59;GB:Q9SKP7); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16595.1); similar to hypothetical protein OsI_023592 [Oryza sativa (indica cultivar-group)] (GB:EAZ02360.1); contains InterPro domain Translocon-associated protein (TRAP), alpha subunit (InterPro:IPR005595)
Range:  from: 9075399    to: 9077512    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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