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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
DAG2
------>
ZmHOX2a(2)
--------->
ARR14(2)
<---------
LBD16
------>
ZmHOX2a(1)
==========================
HOX2a_HOX2a
<
------>
ZmHOX2a(2)
<---------
LBD16
<
<---------
At4g35610
--------->
TOE2(3)
==============
HOX2a_HOX2a
-
--------->
At4g35610
<---------
YAB1
=============
HOX2a_HOX2a
<--
<---------
ATHB12
<------
ZmHOX2a(2)
<-------
TEIL
<------
ZmHOX2a(2)
-------
-----
TEIL
=====================================
HOX2a_HOX2a
<---------
AHL20(2)
---
--->
CCA1(2)
<---------
ARR11(3)
<---------
At4g35610
---------->
DOF2
--------->
ANAC58
--->
At4g35610
--------->
ARR11(3)
<----------
DOF2
<---------
ARR14(2)
--------->
ANAC58
tgcacaaatgatgctgaatttgactctgagatcatccttgatcccgtctttagcttcgtcctcgggatccaaaagcgggattttatcgagcaagacatgg
8977300
<---------
ANAC58
<---------
At4g35610
--------->
REM1(2)
<---------
ICU4
--------->
ALFIN1
-
-------->
ATHB1
xxxxxxxxxxxxxxx>
smallRNA(fl3)
-
--------->
ATHB12
<------
ZmHOX2a(1)
<---------
LBD16
<---
---------
YAB1
========================
HOX2a_HOX2a
---------->
DOF2
----
---------
ATHB12
<---------
At4g35610
<------
ZmHOX2a(2)
---------->
DOF2
----
-------->
ICU4
<---------
ZAT2
<---------
ANAC46
<---------
ZAT2
--------->
At4g35610
<------
-------
GLK1(1)
--------->
ZAT2
<---------
ANAC58
--------->
At4g35610
---------
-->
AtLEC2
<---------
ANAC58
<---------
ANAC58
<---------
At4g35610
--------->
MYB46(3)
<---
------>
GLK1(1)
--------->
At4g35610
<------
ZmHOX2a(1)
--------->
GLK1(1)
-------->
P
--------->
GLK1(2)
aaatcattgagatgcttatggagctgaggagagaagcgtgtaggatcaatacggagagctgaattccaaagagcagagcaacctctgtagaatccaatca
8977400
--------->
HSFB2a(2)
<---------
HSFB2a(2)
----------->
RAV1(2)
-------->
ANAC58
--------->
MYB46(3)
-------->
ANAC58
<---------
REM1(2)
<---------
ARR14(3)
------
ZAT2
<---------
ANAC58
--------->
ARR14(3)
----->
ZAT2
<---------
ANAC58
--------->
ARR11(3)
----->
At4g35610
<---------
At4g35610
<---------
ARR11(3)
---
ATHB12
--------->
At4g35610
----------->
HVH21
>
WOX13(1)
<-----------
RAV1(2)
--------->
ANAC46
--
------
At4g35610
--------->
LBD16
----------->
HVH21
--------->
MYB52(1)
------->
GAMYB
<-
gctcgcctgtctcgaacccgagtttcaaacccagatgacgagcgtcttcacgaccggacacaagaccttcttcgtaaccctcatcgaagccttgttgaac
8977500
--------->
ANAC58
--------->
ANAC46
<---------
HSFB2a(1)
--------->
ANAC58
--------->
ARR11(3)
<---------------------
WRI1
--------->
TOE1(2)
<---------
ARR11(3)
--------->
ANAC46
<---------
ARR14(2)
<----
<---------
REM1(2)
--------->
ARR14(2)
<---------
WOX13(1)
------
------>
ZmHOX2a(1)
--------->
GLK1(1)
>>>>>>>>>
ARR2
<-----
----->
MYC3
--------->
ANAC58
<---------
GLK1(1)
--------->
ATHB12
----------
------
MYC3
--------->
ANAC58
<------
ZmHOX2a(1)
<----------
DOF2
<---------
TOE2(3)
atgtgtctcctctaaacgcacgatacaatcgaggaaatcttcgttcagaccagaactcatagaagaaactttgtttgattgtttttatgttgacaaagat
8977600
---------->
DOF2
<------
ZmHOX2a(1)
-
=================================
HOX2a_HOX2a
<
--------->
ANAC58
=======================
HOX2a_HOX2a
--
--------->
ANAC58
<---------
AGP1
<------
ZmHOX2a(1)
<---
--
ZmHOX2a(2)
============================
HOX2a_HOX2a
<---
--->
ARR11(3)
<------
ZmHOX2a(2)
--------->
ANAC58
----
----
ARR11(3)
--------->
At5g28300
--------->
ANAC58
----
>
DOF2
----------->
GT1
------>
ZmHOX2a(2)
<---------
SPL7
<-----------
GT1
<---------
GLK1(2)
caagaacaagctaaaacggtaatagagatcgatctgatatacagacaaggacgaacgaggaaagagattaacaaaactcaccagttcgatagaatttgca
8977700
--------->
MYB52(1)
<---------
AHL20(2)
-------->
At4g35610
--------->
AHL20(2)
---------
At4g35610
--------->
YAB1
<---------
ARR14(2)
--------->
RAV1(1)
----------->
GT1
<---------
ZAT14
------
At4g35610
---------->
DOF2
<---------
TOE2(3)
------
ZAT2
<---------
At4g35610
--------->
AHL20(2)
-------
----->
At4g35610
<---------
YAB1
<---------
AHL20(2)
<---------
ATHB12
========
----->
ZAT2
*
TSS
--------->
ALFIN1
<---------
AHL20(1)
------------>
CBF
<------
ZmHOX2a(2)
gcagcagaatt
aatggaggtgatgaaagttgtaaaataattttagggtatactatttgataatggacaatgaatacaaaacttgggccttcttggatcat
8977800
---------->
DOF2
<---------
ARR11(3)
------>
ZmHOX2a(1)
<---
===============
HOX2a_HOX2a
==========
==============
HOX2a_HOX2a
<---------
ANAC46
------->
GAMYB
------>
ZmHOX2a(2)
<---------
LBD16
<------------
AtMYB77
--------->
MYB52(1)
<---------
At4g35610
<------
ZmHOX2a(2)
------------>
CBF
--------->
ARR11(3)
--------->
At4g35610
<---------
PCF5
-->
YAB1
<-----------
GT1
<------
ZmHOX2a(2)
---------->
DOF2
--------->
ALFIN1
============================
HOX2a_HOX2a
----------->
GT1
--------->
ALFIN1
aaacttgggcccaatataactgtcctgagggatctaaagaacgggagagagagaagagcattgaatggtgaaagctgtatagcaagttgggggatcacgt
8977900
<---------
ARR14(2)
--------->
ARR14(2)
<----------
DOF2
<---------
ATHB12
<----------
DOF2
------>
MYB46(1)
------->
TEIL
------>
ZmHOX2a(1)
------>
MYB83
------->
MYC3
---------->
ID1
<---------
MYB46(2)
<-------
MYC3
<----------
DOF2
<-----------
GT1
<------
ZmHOX2a(1)
----
TEIL
<---------
DAG2
--------->
ALFIN1
---------->
DOF2
==========================
HOX2a_HOX2a
<---------
MYB59
<---------
ANAC46
<------
ZmHOX2a(2)
--
tcatgtgcctttctgctttttcctattaagtggtgttcttaccaaacatgttttgaagagacttgt
aagtaaaaggatcacttgcattagtcagaaacag
8978000
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
---------->
DOF2
<---------
ATHB12
--------->
ANAC58
--------->
ANAC58
--------->
WOX13(1)
<---------
ANAC58
--------->
ANAC58
<---------
ANAC46
--------->
ANAC58
--------->
ANAC58
--------->
At4g35610
--------->
MYB59
--------->
ANAC58
--------->
GT1
--------->
TOE2(3)
---------->
DOF2
----------->
RAV1(1)
<---------
ANAC58
-------
agagataaatgaaaaacaaaaacattagctaagacttaagagtctaaagtaggcaatcaagcgacatacaatggcaagtagcttgttggaaaaaaaaaac
8978100
----------->
HVH21
--------->
CCA1(2)
<---------
ARR14(2)
--------->
ARR14(2)
----------->
ARR10
--------->
LBD16
<---------
ZAT2
--------->
At4g35610
<---------
ZAT14
---
<---------
At4g35610
--------->
At4g35610
---
<-------
TEIL
<---------
ABI4(2)
<----
<---------
MYB46(3)
<---------
At4g35610
<-------
<------
MYB46(1)
<------
ZmHOX2a(1)
<----------
DOF2
--------->
AHL20(2)
<------
MYB83
--------->
ATHB12
--------->
DEAR3(1)
<---------
ANAC58
-->
MYB52(1)
<---------
MYB46(3)
<---------
YAB1
<---------
ALFIN1
<---------
ANAC58
--
gaatgaattaaaacaaaaaacgttgttggttcatcagac
tcagtggtatgatttgaggacagcaccgcagatatgacagacgatagctttccaagctttg
8978200
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AGI:
At2g20830.1
Description:
folic acid binding / transferase. similar to formiminotransferase-cyclodeaminase-like [Oryza sativa (japonica cultivar-group)] (GB:BAA83349.1); contains InterPro domain Formiminotransferase; (InterPro:IPR004227); contains InterPro domain Formiminotransferase, N-terminal; (InterPro:IPR012886)
Range:
from: 8975292
to: 8977711
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At2g20835.1
Description:
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15534.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39221.1)
Range:
from: 8977967
to: 8978384
Orientation: Reverse
Links:
TAIR
MIPS
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publications
when using AthaMap.
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