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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                 ------>ZmHOX2a(1)
             <---------ALFIN1
             --------->AtMYB61
          <---------ALFIN1
          --------->AtMYB61              <---------At4g35610                                 <------
          --------->DEAR3(1)       <---------At4g35610                                     <--------
         --------->MYB46(3)        --------->At4g35610                                    ------>ZmHOX2a(1)
       --------->AtMYB61           --------->ZAT14                                     <---------YAB1
       --------->DEAR3(1)          --------->ZAT2                              --------->ARR11(3)
       <---------ALFIN1            <---------ZAT2                              <---------ARR14(2)
      --------->MYB46(3)       <---------ALFIN1                                --------->ARR14(2)
    --------->DEAR3(1)        <---------ZAT14 --------->HSFB2a(2)              <---------ARR11(3)
    <---------ALFIN1------>ZmHOX2a(1) ------>NtERF2                        <---------ZAT2--------->TOE2(3)
    --------->AtMYB61        ------>NtERF2    <---------HSFB2a(2)          <---------At4g35610
   --------->MYB46(3)     ------>NtERF2 <---------ALFIN1         ---------->DOF2--------->CCA1(2)
  ------>NtERF2 <---------ALFIN1  <-----------RAV1(1)      <---------PCF5  --------->At4g35610
 
tgtgccaccaccaccacctcctccttctctgcctccactgctgccactgccagaagggctagggaccccaaagtactcagcagatatatcatccttatct  8854000
                                                     <---------ANAC46
                                                     <---------ANAC58
                                                     <---------ANAC58
                                               ------>ZmHOX2a(1)
                                      --------->AHL20(1)                                     <------
                                      --------->ARR11(3)                                     <------
                                      <---------AHL20(1)                                     -------
   <-----------RAV1(2)    <---------ARR11(3)  --------->TOE2(3)                    <---------ARR11(3)
---CCA1(2)                --------->ARR11(3)<---------YAB1                         --------->ARR11(3)
-CCA1(2)              ---------->DOF2 <---------ARR11(3)    <-----------RAV1(2)---------->DOF2
 
ctcggaccagaagggttagagacctcaaagaactcagaaaatatatcatccttatttcttggaccagaagggctagagaccccaaagaactcagaatata  8854100
          <---------LBD16
        <---------ARR14(2)
        --------->ARR14(2)
       <---------GLK1(1)
       --------->GLK1(1)                                                      <---------LBD16
      <----------DOF2     <-----------RAV1(2)                                <---------LBD16
    --------->LBD16    <------ZmHOX2a(1)         --------->ARR11(3)<---------At4g35610
  <---------LBD16<-----------RAV1(2)             <---------ARR11(3)--------->At4g35610
 <XXXXXXXXXXXXXXXXXXXXMIR2111A*              ---------->DOF2 <---------ARR11(3)
---ARR11(3)   <---------PCF5       <---------HSFB2a(2)       --------->ARR11(3)
---AHL20(1)<---------HSFB2a(2)  <---------ARR11(3)           --------->AHL20(1)
-->ARR11(3)--------->HSFB2a(2)  --------->ARR11(3)           <---------AHL20(1)   ----------->HVH21
 
tatcatccgcatttctgggaccagaaggaccagaaggtctagagaccccaaagaactcagaaaatatatcatctgcatttctcgggtgactcatgtttct  8854200
                                               <---------ICU4                                   ----
                        --------->GLK1(1)      --------->YAB1                                -------
                     --------->LBD16          --------->ICU4                          --------->At4g35610
                    --------->HSFB2a(2) --------->LBD16                               <---------At4g35610
                    <---------HSFB2a(2) ----------->GT1                               <---------ZAT2
                    --------->HSFC1(1) ----------->GT1                             <---------MYB52(1)
                --------->KAN4(2)      --------->LBD16                            <-----------HVH21
               --------->HSFB2a(1)   <---------LBD16                           <---------At5g28300
               <---------KAN4(1)<---------HSFB2a(2)                    --------->LBD16--------->ZAT2
              ------->TEIL      --------->HSFB2a(2)                   <---------HSFB2a(2)   <------ZmHOX2a(1)
    --------->ALFIN1<---------HSFC1(1)<---------LBD16                 --------->HSFB2a(2) <---------TOE2(3)
 
tctcagagtgtggaatgaatgttccagaaatcgttctgaaaccgggaaaataatgagattagtacaatccgttccagagactcaccgtgagctgaggaaa  8854300
                                 --------->ALFIN1
                               <---------ARR14(2)
                           <---------LBD16
                          --------->MYB52(1)
                         <-----------GT1
             --------->ZAT18   --------->ARR14(2)    --------->YAB1
      --------->ATHB12--------->YAB1                 <---------ICU4                --------->DAG2
   ----------->GT1    <---------ICU4                --------->ICU4                <---------ZAT14
  --------->DAG2     --------->KAN4(1)              <---------YAB1       ------->TEIL
 ---------->DOF2    <---------KAN4(2)             --------->YAB1       <---------ZAT14   *TSS   ----
------->GT1  --------->ZAT14   <---------GLK1(2) --------->ICU4        --------->ZAT14--------->ALFIN1
--->DOF2     <---------ZAT14 --------->LBD16<------ZmHOX2a(1)<---------TOE2(3)    ---------->DOF2
 
ggagaaaagtgatttgtgcagagaataatcaccggattgtgggagtaggacgatgatgatgaccaaggatgaactgtaccgagagtaaagtaggggagag  8854400
                                                                 <------NtERF2
                                                                ------>NtERF2
                                                              --------->RRTF1(1)
                                                         <---------WRKY18(1)
                                                      <------------CBF
                                                     --------->ATHB51
                              --------->HSFB2a(2)    <---------ICU4                          -------
          <---------------AtSPL8                    <---------YAB1                   <---------AHL20(2)
          --------------->AtSPL8              ------>MYB83  <---------DEAR3(1)       --------->AHL20(2)
     --------->ICU4           <---------HSFB2a(2)   --------->ICU4  --------->MYB52(1)       -------
     <---------YAB1         --------->ZAT18   ------>MYB46(1) --------->RAP2.3(1)<---------AHL20(2)
--------->YAB1       ---------->DOF2       --------->MYB46(3)<---------ATERF1(1) --------->AHL20(2)
------>DOF2       ----------->TBP    <------------CBF--------->ATHB12  --------->LBD16---------->DOF2
 
aaagcataatgtttatgtactacataaagagtgctcgaagtattgaaccaacttcattattgaccggcgcaaaccggacttggtttaattaaagagagat  8854500
          ------->TEIL
       --------->ANAC55(2)
       --------->ANAC58   <------MYB46(1)
       --------->ANAC58  *TSS
       <---------ANAC55(2)<------MYB83                              <-----------GT1
      --------------->AtSPL3                          --------->HSFB2a(2)
-->CCA1(2)<-------TEIL   <---------AtMYB61            <---------HSFB2a(2)
-->At4g35610         --------->ATHB12    <-----------RAV1(2)       --------->AHL20(2)
 
gaatgaagacacgtacatgtagaacgatttggtgtttgtagaggccagggattttttctggcaaatgcaattaactagtatcagtctcatttctagtctc  8854600
                                                                            --------->At4g35610
                   <---------ANAC58          <---------ANAC58            <---------ANAC46
                   <---------ANAC46 <---------GLK1(1)                    <---------ANAC58
                 <-----------HVH21  --------->GLK1(1)               <-----------RAV1(1)
                 <---------MYB52(1)<---------ARR11(3)      ------>ZmHOX2a(2)--------->ZAT14
                --------->LBD16    --------->ARR11(3)      <-------TEIL  <---------ANAC58
              <---------LBD16     <---------CCA1(2)       <------ZmHOX2a(2) --------->ZAT18
   <---------AHL20(2)       --------->GLK1(2)<---------ANAC58      ------->TEIL           <---------GLK1(2)
  --------->AHL20(2)        --------->ARR11(3)           <---------ARR14(2) <---------ZAT14---------
  <---------AHL20(2) <---------ANAC46------>ZmHOX2a(2)   ------->TEIL  <---------ANAC46 ----------->ARR10
 <---------WOX13(1)<---------ANAC58<---------AGP1        --------->ARR14(2) <---------At4g35610
 
actgatttattttgttttccggtcgtgtgagcatcttggatctctagagcttggcaaatggatccatatgtatgttgtgtgcagagagaataagattcta  8854700
                             --------->DAG2
                     <---------YAB1
                    ------>ZmHOX2a(2)
                  --------->ARR11(3)             --------->YAB1
                  <---------ARR11(3)             xxxxxxxxxxxxxxxx>smallRNA(i)
                 --------->YAB1     --------->ANAC46
                <---------ATHB12   --------->HSFB2a(2)
                --------->ICU4     <---------HSFB2a(2)                       --------->YAB1
>GLK1(2)<---------MYB46(3)  ---------->DOF2     <---------YAB1  --------->MYB46(3)    <-------GAMYB
 
aaacaaattggtgtttgcaatgatcttattgaaaagtactcgaaatgtggtatgatcagtcgagctatccactgttttgatcatatgagggttgaagtat  8854800
                <---------ARR11(3)
                --------->ARR14(2)
                <---------ARR14(3)
                <---------GLK1(2)
                --------->ARR11(3)
                --------->ARR14(3)
              ----------->ARR10                    <-------GAMYB
         <----------ID1                           --------->MYB55(2)
     -------->HAHB4                               --------->MYB111(2)
     --------->ATHB12          <---------MYB59    --------->MYB52(2)                      <<<<<<<ZML2
     --------->YAB1           --------->ANAC46    <---------MYB46(3)            >>>>>>>>>>E2Fa
     <---------ICU4           --------->ANAC58  <-------GAMYB                   >>>>>>>>>>E2Fc
    --------->ICU4            ----------------->AGL1        <---------WOX13(1)  >>>>>>>>>>E2Fe
    <---------ATHB12          --------->ANAC58<---------TOE2(3)<---------TOE2(3)>>>>>>>>>>E2Fd
   <---------TOE2(3)      --------->YAB1 --------->ZAT6   --------->ATHB12     ----------->GT1
 
tttgttaatgatgagacaagattttcaaataatacccaatttgaacactacggttgttgtttgattgatgttttagcaagagcgggaaaactagaacgag  8854900
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AGI:  At2g20550.1   
Description:  DNAJ chaperone C-terminal domain-containing protein. similar to DNAJ heat shock family protein [Arabidopsis thaliana] (TAIR:AT2G20560.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66399.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971)
Range:  from: 8852883    to: 8854390    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At2g20555.1   
Description:  pseudogene of pentatricopeptide (PPR) repeat-containing protein
Range:  from: 8854526    to: 8855249    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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