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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
------>
ZmHOX2a(1)
<---------
ALFIN1
--------->
AtMYB61
<---------
ALFIN1
--------->
AtMYB61
<---------
At4g35610
<------
--------->
DEAR3(1)
<---------
At4g35610
<--------
--------->
MYB46(3)
--------->
At4g35610
------>
ZmHOX2a(1)
--------->
AtMYB61
--------->
ZAT14
<---------
YAB1
--------->
DEAR3(1)
--------->
ZAT2
--------->
ARR11(3)
<---------
ALFIN1
<---------
ZAT2
<---------
ARR14(2)
--------->
MYB46(3)
<---------
ALFIN1
--------->
ARR14(2)
--------->
DEAR3(1)
<---------
ZAT14
--------->
HSFB2a(2)
<---------
ARR11(3)
<---------
ALFIN1
------>
ZmHOX2a(1)
------>
NtERF2
<---------
ZAT2
--------->
TOE2(3)
--------->
AtMYB61
------>
NtERF2
<---------
HSFB2a(2)
<---------
At4g35610
--------->
MYB46(3)
------>
NtERF2
<---------
ALFIN1
---------->
DOF2
--------->
CCA1(2)
------>
NtERF2
<---------
ALFIN1
<-----------
RAV1(1)
<---------
PCF5
--------->
At4g35610
tgtgccaccaccaccacctcctccttctctgcctccactgctgccactgccagaagggctagggaccccaaagtactcagcagatatatcatccttatct
8854000
<---------
ANAC46
<---------
ANAC58
<---------
ANAC58
------>
ZmHOX2a(1)
--------->
AHL20(1)
<------
--------->
ARR11(3)
<------
<---------
AHL20(1)
-------
<-----------
RAV1(2)
<---------
ARR11(3)
--------->
TOE2(3)
<---------
ARR11(3)
---
CCA1(2)
--------->
ARR11(3)
<---------
YAB1
--------->
ARR11(3)
-
CCA1(2)
---------->
DOF2
<---------
ARR11(3)
<-----------
RAV1(2)
---------->
DOF2
ctcggaccagaagggttagagacctcaaagaactcagaaaatatatcatccttatttcttggaccagaagggctagagaccccaaagaactcagaatata
8854100
<---------
LBD16
<---------
ARR14(2)
--------->
ARR14(2)
<---------
GLK1(1)
--------->
GLK1(1)
<---------
LBD16
<----------
DOF2
<-----------
RAV1(2)
<---------
LBD16
--------->
LBD16
<------
ZmHOX2a(1)
--------->
ARR11(3)
<---------
At4g35610
<---------
LBD16
<-----------
RAV1(2)
<---------
ARR11(3)
--------->
At4g35610
<XXXXXXXXXXXXXXXXXXXX
MIR2111A*
---------->
DOF2
<---------
ARR11(3)
---
ARR11(3)
<---------
PCF5
<---------
HSFB2a(2)
--------->
ARR11(3)
---
AHL20(1)
<---------
HSFB2a(2)
<---------
ARR11(3)
--------->
AHL20(1)
-->
ARR11(3)
--------->
HSFB2a(2)
--------->
ARR11(3)
<---------
AHL20(1)
----------->
HVH21
tatcatccgcatttctgggaccagaaggaccagaaggtctagagaccccaaagaactcagaaaatatatcatctgcatttctcgggtgactcat
gtttct
8854200
<---------
ICU4
----
--------->
GLK1(1)
--------->
YAB1
-------
--------->
LBD16
--------->
ICU4
--------->
At4g35610
--------->
HSFB2a(2)
--------->
LBD16
<---------
At4g35610
<---------
HSFB2a(2)
----------->
GT1
<---------
ZAT2
--------->
HSFC1(1)
----------->
GT1
<---------
MYB52(1)
--------->
KAN4(2)
--------->
LBD16
<-----------
HVH21
--------->
HSFB2a(1)
<---------
LBD16
<---------
At5g28300
<---------
KAN4(1)
<---------
HSFB2a(2)
--------->
LBD16
--------->
ZAT2
------->
TEIL
--------->
HSFB2a(2)
<---------
HSFB2a(2)
<------
ZmHOX2a(1)
--------->
ALFIN1
<---------
HSFC1(1)
<---------
LBD16
--------->
HSFB2a(2)
<---------
TOE2(3)
tctcagagtgtggaatgaatgttccagaaatcgtt
ctgaaaccgggaaaataatgagattagtacaatccgttccagagactcaccgtgagctgaggaaa
8854300
--------->
ALFIN1
<---------
ARR14(2)
<---------
LBD16
--------->
MYB52(1)
<-----------
GT1
--------->
ZAT18
--------->
ARR14(2)
--------->
YAB1
--------->
ATHB12
--------->
YAB1
<---------
ICU4
--------->
DAG2
----------->
GT1
<---------
ICU4
--------->
ICU4
<---------
ZAT14
--------->
DAG2
--------->
KAN4(1)
<---------
YAB1
------->
TEIL
---------->
DOF2
<---------
KAN4(2)
--------->
YAB1
<---------
ZAT14
*
TSS
----
------->
GT1
--------->
ZAT14
<---------
GLK1(2)
--------->
ICU4
--------->
ZAT14
--------->
ALFIN1
--->
DOF2
<---------
ZAT14
--------->
LBD16
<------
ZmHOX2a(1)
<---------
TOE2(3)
---------->
DOF2
ggagaaaagtgatttgtgcagagaataatcac
cggattgtgggagtaggacgatgatgatgaccaaggatgaactgtaccgagagtaaag
taggggagag
8854400
<------
NtERF2
------>
NtERF2
--------->
RRTF1(1)
<---------
WRKY18(1)
<------------
CBF
--------->
ATHB51
--------->
HSFB2a(2)
<---------
ICU4
-------
<---------------
AtSPL8
<---------
YAB1
<---------
AHL20(2)
--------------->
AtSPL8
------>
MYB83
<---------
DEAR3(1)
--------->
AHL20(2)
--------->
ICU4
<---------
HSFB2a(2)
--------->
ICU4
--------->
MYB52(1)
-------
<---------
YAB1
--------->
ZAT18
------>
MYB46(1)
--------->
RAP2.3(1)
<---------
AHL20(2)
--------->
YAB1
---------->
DOF2
--------->
MYB46(3)
<---------
ATERF1(1)
--------->
AHL20(2)
------>
DOF2
----------->
TBP
<------------
CBF
--------->
ATHB12
--------->
LBD16
---------->
DOF2
aaagcataatgtttatgtactacataaagagtgctcgaagtattgaaccaacttcattattgaccggcgcaaaccggacttggtttaattaaagagagat
8854500
------->
TEIL
--------->
ANAC55(2)
--------->
ANAC58
<------
MYB46(1)
--------->
ANAC58
*
TSS
<---------
ANAC55(2)
<------
MYB83
<-----------
GT1
--------------->
AtSPL3
--------->
HSFB2a(2)
-->
CCA1(2)
<-------
TEIL
<---------
AtMYB61
<---------
HSFB2a(2)
-->
At4g35610
--------->
ATHB12
<-----------
RAV1(2)
--------->
AHL20(2)
gaatgaagacacgtacatgtagaac
gatttggtgtttgtagaggccagggattttttctggcaaatgcaattaactagtatcagtctcatttctagtctc
8854600
--------->
At4g35610
<---------
ANAC58
<---------
ANAC58
<---------
ANAC46
<---------
ANAC46
<---------
GLK1(1)
<---------
ANAC58
<-----------
HVH21
--------->
GLK1(1)
<-----------
RAV1(1)
<---------
MYB52(1)
<---------
ARR11(3)
------>
ZmHOX2a(2)
--------->
ZAT14
--------->
LBD16
--------->
ARR11(3)
<-------
TEIL
<---------
ANAC58
<---------
LBD16
<---------
CCA1(2)
<------
ZmHOX2a(2)
--------->
ZAT18
<---------
AHL20(2)
--------->
GLK1(2)
<---------
ANAC58
------->
TEIL
<---------
GLK1(2)
--------->
AHL20(2)
--------->
ARR11(3)
<---------
ARR14(2)
<---------
ZAT14
---------
<---------
AHL20(2)
<---------
ANAC46
------>
ZmHOX2a(2)
------->
TEIL
<---------
ANAC46
----------->
ARR10
<---------
WOX13(1)
<---------
ANAC58
<---------
AGP1
--------->
ARR14(2)
<---------
At4g35610
actgatttattttgttttccggtcgtgtgagcatcttggatctctagagcttggcaaatggatccatatgtatgttgtgtgcagagagaataagattcta
8854700
--------->
DAG2
<---------
YAB1
------>
ZmHOX2a(2)
--------->
ARR11(3)
--------->
YAB1
<---------
ARR11(3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
--------->
YAB1
--------->
ANAC46
<---------
ATHB12
--------->
HSFB2a(2)
--------->
ICU4
<---------
HSFB2a(2)
--------->
YAB1
>
GLK1(2)
<---------
MYB46(3)
---------->
DOF2
<---------
YAB1
--------->
MYB46(3)
<-------
GAMYB
aaacaaattggtgtttgcaatgatcttattgaaaagtactcgaaatgtggtatgatcagtcgagctatccactgttttgatcatatgagggttgaagtat
8854800
<---------
ARR11(3)
--------->
ARR14(2)
<---------
ARR14(3)
<---------
GLK1(2)
--------->
ARR11(3)
--------->
ARR14(3)
----------->
ARR10
<-------
GAMYB
<----------
ID1
--------->
MYB55(2)
-------->
HAHB4
--------->
MYB111(2)
--------->
ATHB12
<---------
MYB59
--------->
MYB52(2)
<<<<<<<
ZML2
--------->
YAB1
--------->
ANAC46
<---------
MYB46(3)
>>>>>>>>>>
E2Fa
<---------
ICU4
--------->
ANAC58
<-------
GAMYB
>>>>>>>>>>
E2Fc
--------->
ICU4
----------------->
AGL1
<---------
WOX13(1)
>>>>>>>>>>
E2Fe
<---------
ATHB12
--------->
ANAC58
<---------
TOE2(3)
<---------
TOE2(3)
>>>>>>>>>>
E2Fd
<---------
TOE2(3)
--------->
YAB1
--------->
ZAT6
--------->
ATHB12
----------->
GT1
tttgttaatgatgagacaagattttcaaataatacccaatttgaacactacggttgttgtttgattgatgttttagcaagagcgggaaaactagaacgag
8854900
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AGI:
At2g20550.1
Description:
DNAJ chaperone C-terminal domain-containing protein. similar to DNAJ heat shock family protein [Arabidopsis thaliana] (TAIR:AT2G20560.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66399.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971)
Range:
from: 8852883
to: 8854390
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At2g20555.1
Description:
pseudogene of pentatricopeptide (PPR) repeat-containing protein
Range:
from: 8854526
to: 8855249
Orientation: Forward
Links:
TAIR
MIPS
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publications
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