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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                              --------->GLK1(1)
                                                           --------->LBD16
                                                          <---------ANAC55(2)
                                                          --------->ANAC55(1)
                                                          --------->ANAC58
                                                          --------->ANAC46
               --------->ANAC46                           --------->ANAC58
          <-----------ARR10                              <---------LBD16
  <---------ANAC58        ----------->GT1       --------->ANAC58
  <---------ANAC58 ----------->RAV1(1)          --------->ANAC46                       --------->TOE2(3)
 <---------TOE1(2) --------->MYB52(1)           --------->ANAC58 ----------->GT1    <---------GLK1(1)
------>ZmHOX2a(1) --------->AtMYB61      XXXXXXXXXXXXXXXXXXXX>MIR403               --------->ARR11(3)
--------->RAV1(2)--------->MYB46(3)  --------->AHL20(2) --------->MYB52(1)         <---------ARR11(3)
 
ctcctgcgtttcaaatctaaaccaccagaaggaaacaaaattaaaacacacacacaaactcacggaaatcgaaatatatgttgtaagatacctgaatttg  8743400
                                                                          <---------At4g35610
                                                                          --------->At4g35610
                                                                         --------->MYB52(2)
                                                                     <---------ANAC58
                                                                     <---------ANAC58
                                                                  <----------DOF2
                          --------->ARR14(2)                    <---------ZAT2
             <------ZmHOX2a(2)                       <---------TOE2(3)  --------->SPL7
           =====================================HOX2a_HOX2a     --------->ZAT2
           <------ZmHOX2a(1)             ------>ZmHOX2a(2)      --------->At4g35610
         <---------TOE1(2)<---------ARR14(2)         <---------TOE1(3) <---------MYB52(1)
   --------->ZAT18--------->ZAT14      --------->ARR14(2)       <---------At4g35610
 <---------ZAT18  <---------ZAT14      <---------ARR14(2)      ------>NtERF2
 
ctcgagcgctcgaaggatcagtaaacttgaatccgatttgtggatcggtcttatttagggtttcgccagctttcgttcgctgattccttcttctcatcac  8743500
                                                                                 --------->ANAC46
                                                                                 <---------ANAC55(2)
                                                                                 --------->ANAC58
                                           --------->YAB1                        --------->ANAC58
                                           <---------ICU4                        --------->ANAC55(2)
  --------->At4g35610        <------ZmHOX2a(2)--------->YAB1                  ----------->HVH21
 <---------ARR14(2)    <---------ANAC46   <---------YAB1                     <-----------HVH21
 --------->ARR14(2)  --------->GLK1(2)  --------->YAB1                      --------->ANAC46     ---
 --------->GLK1(2)  <---------GLK1(2)----------->GT1                      <-----------GT1       <---
 
cgagtatctgaattcgttctacagaatcgtggatcaaacgctgttataatcacgaaggcgatgaagaatgagagatttcacatcacgcgtccatggcgat  8743600
                                                   <---------ATHB12
                                         <------NtERF2
                                        ------>NtERF2
                                        --------->RAP2.6(2)
                                       --------->ATERF1(2)
                                       <---------RAP2.6(2)          --------->GLK1(2)     <---------AHL20(2)
                                       <---------ATERF1(2)         <---------GLK1(2)  <---------AHL20(2)
                                       <---------ANAC46       <-----------GT1     --------->AHL20(2)
                                       <---------DEAR3(1)  <---------ICU4         --------->YAB1----
    --------->GLK1(2)                 <---------LBD16 -------->P   --------->ARR14(2)<---------AHL20(1)
------>YAB1                           --------->RAP2.6(3)*TSS<---------YAB1       <---------AHL20(2)
----TEIL                        ------->TEIL     --------->WOX13(1)<---------ARR14(2)--------->AHL20(1)
 
tcataagaatttgaaatcggagaagatgagaaatgaattttggcggcaaaatcaatcaacccttattacagattctttgctctaattatatatttcattt  8743700
           --------->TGA2(2)                            <---------CCA1(2)
          <-----------HVH21                         <-----------HVH21
          <-----------TGA1                        -------->ABF1
         --------->ANAC55(2)                      <-------MYC3
         --------->ANAC46                         ------->MYC3
         <---------ANAC55(2)                      ------->MYC2
         --------->O2                             <-------MYC4
         --------->ANAC58                         ------->MYC4
         <---------O2                             <-------MYC2
         --------->ANAC58                        <---------ANAC55(2)
         --------->TGA1a                         ============================================bZIP_DOF
         --------->bZIP60(1)                     <---------TGA1a
         --------->bZIP60(2)                     ================================================MYC_MYB
         <---------bZIP60(1)                     --------->ANAC46
         <---------TGA1a                         --------->ANAC55(2)
        <-----------bZIP910(1)         <---------ANAC55(2)                                    <-----
        <-----------STF1               --------->ANAC55(2)                                    ------
<---------TOE1(3)             --------->ARR14(2) --------->TGA1a                      <-----------GT1
<---------TOE2(3)       <---------HSFB2a(2)      <---------O2            <-----------GT1 ------->GAMYB
------------------->TaNAC69(2)<---------ARR14(2) --------->O2     ----------->GT1 <----------DOF2  >
 
tctaaggttgccacgtcatcacattatccagacgatactgatatgtgatcacacgtgtcatatcacaagtggtttaaaacgattccttttaaccccaaac  8743800
                                                                             -------->P
                                                                             --------->MYB52(1)
                                                                           <---------MYB52(2)
                                                                          --------->ZAT2
                                                                          --------->At4g35610
                                                                          <---------At4g35610
                                                                       <---------ZAT2
                                                                       <---------At4g35610
                                                                       --------->At4g35610
                                                                    --------->TGA2(2)
                                                                  --------->TGA2(1)
                                                                  ====================MYC_MYB
                                                                  <---------O2
                                                                  --------->O2<---------LBD16
                                                                  <---------bZIP60(1)
                                                                  <---------ANAC55(2)
                                                                  --------->TGA1a
                                                                  --------->bZIP60(1)
                                                                  <---------TGA2(1)
                                                                  <---------TGA1a
                                                                 <-----------STF1
                                              <------ZmHOX2a(2)  ----------->STF1
                <----------DOF2              <-----------HVH21  <---------TGA2(2) --------->ARR14(2)
               <---------DAG2               ================================MYC_MYB               --
      <----------DOF2   <------ZmHOX2a(2)   ------->GAMYB      ----------->TGA1   <---------ARR14(2)
 ---------->DOF2<---------DAG2 --------->ANAC46    --------->ANAC58<-----------TGA1              <--
----ATHB12  <---------ALFIN1   --------->ANAC58    --------->ANAC58<<<<<<<<<<<AtbZIP1        -------
------>CBF <---------ZAT18     --------->ANAC58    --------->ANAC46<-----------HVH21         -------
>>>>>>>>RAP2.2*TSS <---------LBD16         --------->MYB46(3)  ----------->HVH21--------->LBD16  <--
 
aatctaaagctttgtccaccttttcggatcactcacacaacttccaacgatcacacacaaatggcgatgacgtcagcagctaccggatttattctcacgg  8743900
                        <---------ARR14(2)
                      <---------MYB46(3)
          <------NtERF2 --------->ARR14(2)
        <---------DEAR3(1)
        --------->ATERF1(2)
        <---------ATERF1(2)
       <------NtERF2  --------->MYB55(2)
      ------>NtERF2  <---------DEAR3(1)
      <---------ATERF1(1)  --------------->AGL15
      --------->LBD16<---------AtMYB61
    <---------LBD16  --------->ALFIN1                               --------->HSFC1(2)
 <-----------HVH21  <-------GAMYB                     <---------ANAC58                            <-
 <---------SPL7     <------NtERF2  --------->ZAT18    <---------ANAC58   <---------DEAR3(2)      ---
------->MYB52(1)   <---------DEAR4(2)  --------->AtMYB61            <---------HSFB2a(1)          <--
-------WRKY38(1)  <---------DEAR3(1)   --------->DEAR3(1)           --------->HSFB2a(1)          <--
-->ANAC58------>NtERF2--------->ABI4(2)<---------ALFIN1             <---------HSFC1(2)          <---
-->ANAC58--------->RAP2.6(2)  ---------->DOF2      <----------DOF2 ----------->ARR10           <----
-------WRKY12     <---------DREB2C(2) --------->MYB46(3)    <---------At4g35610         <-----------HVH21
 
ccaacgtcccggcggcaataggcggtggttcttcaaagagcaccaccattgtgtctttcttgccgatgagaagcttcggttcaaggctagtagtcagagc  8744000
                                                         --------->ZAT2
                                                         --------->At4g35610
                    --------->DEAR3(1)                   <---------At4g35610      <---------TOE2(3)
                    ------->GAMYB                        <---------ZAT2       <------NtERF2
                    ===============MYC_MYB            --------->At4g35610     <---------At4g35610
                    --------->RAP2.6(2)               <---------At4g35610     --------->At4g35610
                   --------->MYB46(3)                 <---------ZAT2      <---------SPL7
                   ================MYC_MYB         --------->ZAT2         --------->LBD16
       <---------ALFIN1                            <---------ZAT2   --------->HSFC1(2)
      <-------TEIL <---------MYB55(2)              <---------At4g35610    ------>NtERF2
     --------->CCA1(2)    <-----------HVH21        --------->At4g35610--------->ARR14(2)
    --------->ARR11(3)   <---------TGA1a        <---------At4g35610 <---------HSFB2a(1)
    <---------ARR11(3)   --------->TGA1a        --------->At4g35610 --------->HSFB2a(1)
    --------->ARR14(2)   <---------O2          --------->DEAR3(1)   <---------HSFC1(2)
    <---------ARR14(2)   --------->O2        <XXXXXXXXXXXXXXXXXXXXMIR834 <---------RAP2.6(2)
<------NtERF2      --------->DEAR3(2)       --------->AtMYB61     ---------->DOF2 <---------TOE1(3)
--------ANAC46------>NtERF2                 <---------ALFIN1<---------LBD16 --------->SPL7
------>At4g35610   <------------AtMYB77     --------->DEAR3(1)--------->LBD16--------->RAP2.6(2)
-------LBD16<---------LBD16                --------->MYB46(3) ------>NtERF2------>NtERF2       =====
----NtERF2--------->AtMYB61        --------->ARR11(3)<-----------RAV1(1)<---------LBD16        -----
------RAP2.3(1)   <---------ATERF1(1)      <---------MYB55(2)<---------DEAR3(1)<----------CDC5 =====
-----DEAR3(1) --------->LBD16  <---------MYB52(1) <-----------RAV1(1) <---------ARR14(2)      <-----
 
ggcggaagatacacctccggcaaccgcctcgtcggatagttcttccaccaccgctgctgctgctccggcgaaagttccggccgctaaggctaaacctcct  8744100
                           --------->ICU4
                     --------->ANAC46
                     <---------TOE1(2)
                  ------>ZmHOX2a(2)
                 <------ZmHOX2a(2)
                <---------ARR14(2)
       ---------->DOF2   <-------TEIL              ------->TEIL
xxxxxxxxxxxxxxxx>smallRNA(si3)             <----------DOF2
========================HOX2a_HOX2a     --------->GLK1(2)
->ZmHOX2a(1)   <------ZmHOX2a(1)        <---------ARR11(3)                         <---------YAB1
=========================HOX2a_HOX2a--------->YAB1<---------AtLEC2                <---------TOE2(3)
------------AGL1--------->ARR14(2)  --------->ANAC55(2)                          --------->YAB1
 
ccaattggcccaaagagaggatccaaggtacttattcatacataatctttgatgcatgtttatacttcaaaattttgagtttattgatgatagccaagtt  8744200
                                                                                               -----
               --------->HSFB2a(2)                                                        <------ZmHOX2a(1)
               <---------HSFB2a(2)               <---------WRKY12                     <------ZmHOX2a(2)
            --------->GLK1(2)                    <---------WRKY38(1)                 <---------AGP1
       ---------->DOF2                  --------->ICU4                            <---------HSFB2a(2)
   <---------YAB1          --------->YAB1       --------->WRKY18(1)               --------->HSFB2a(2)
 
tggattacaataaagtttctggactatttagaataattttgtaagtatggggtcaatgtgaaacttatatgaagtttttggacctctagatcaggattaa  8744300
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AGI:  At2g20250.1   
Description:  unknown protein
Range:  from: 8740831    to: 8743658    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At2g20260.1   
Description:  PSAE-2 (photosystem I subunit E-2); catalytic. Identical to Photosystem I reaction center subunit IV B, chloroplast precursor (PSAE2) [Arabidopsis Thaliana] (GB:Q9S714); similar to PSAE-1 (PSA E1 KNOCKOUT), catalytic [Arabidopsis thaliana] (TAIR:AT4G28750.1); similar to PSI reaction center subunit III [Citrus sinensis] (GB:BAF80474.1); contains InterPro domain Electron transport accessory protein; (InterPro:IPR008990); contains InterPro domain Photosystem I reaction centre subunit IV/PsaE; (InterPro:IPR003375)
Range:  from: 8743815    to: 8744848    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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