Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      <-------GAMYB                                                                   --------->MYB55(2)                                                                   <---------MYB46(3)                                             <---------YAB1        --------->MYB111(2)                                           <---------At4g35610 <---------TOE1(3)  --------->ATHB12                                     <---------HSFC1(1)        <---------TOE2(3)  <---------ICU4                                     --------->HSFB2a(2)       <---------YAB1    <---------YAB1                                     <---------HSFB2a(2)     --------->YAB1    <---------ICU4           <---------ARR11(3)        --------->HSFC1(1)      <---------ICU4    --------->YAB1           --------->ARR11(3)  <---------GLK1(2)   ---------->DOF2<--------P  --------->ICU4        <       ---------->DOF2   --------->ICU4 <------ZmHOX2a(1)   --------->ICU4 --------->ICU4      <-----   agtttgaataaaagaacttacatagtagtaatggattttctaggaagatgattcaaagaagaattatggttgttgacataatcatcatcggtatcgaagt  8713600                              ---------->DOF2                            <---------REM1(2)                <-----------ARR10                <---------ARR11(3)                --------->ICU4                <---------ARR14(2)           --------->YAB1          <---------MYB52(1)                --------->ARR14(2)        <---------ICU4        --------->MYB52(1)                <---------ARR11(1)       <---------YAB1       --------->MYB46(3)                --------->ARR11(3)     --------->YAB1  <---------AHL20(2) ----------ID1 <---------CCA1(2)      <---------YAB1   --------->AHL20(2)     <<<<<<<<<TBF1      ---- ------HVH21   <---------GLK1(1) --------->YAB1<--------P--------->YAB1--------->ARR11(3)   <--------   cagggacaaaatgatgcatatctctctctctacaaagatgatgataatggtaagtattaaaataacaaacagttatcttcttcttctggttttataacca  8713700                     ---------->DOF2                 <------ZmHOX2a(2)                   --------->ANAC46                 --------->CCA1(2)                <---------ZAT14                --------->ARR14(2)                --------->ZAT14                --------->ARR11(3)           --------->ZAT14                <---------ARR11(3)           <---------ZAT14                --------->AGP1               --------->ZAT18                <---------ARR14(2)         <---------------AtSPL8          --------->LBD16                  --------------->AtSPL8        --------->ZAT14 ------>DOF2---------->DOF2                <---------------AtSPL3        <---------ZAT14            < ---GT1 <---------LBD16       --------->ZAT6 <---------ZAT18        <---------ATHB12  <-----------GT1   aaagaaaaaccccagaaagatccaaaagagtagcactagtgagtaagtgtactacacacagagattactaatcagtgaagaaacatatatactacccaga  8713800                                --------->ARR14(2)                        <------MYB83                        <------MYB46(1)                                 --------->LBD16            <-                       --------->MYB46(2)                      <----------DOF2                    ---                       --------->MYB111(2)                    --------->TOE2(3)                   ===                       --------->MYB59                     <-----------GT1                      -----                       <---------MYB46(3)              <---------AHL20(1)                       <----                       --------->MYB111(1)             --------->ARR11(3)                       -----                      <--------P<---------ARR14(2)     <---------ARR11(3)                       <----                      <---------MYB55(1)               --------->AHL20(1)                       <---- <---------ARR11(3)<---------TOE1(3)                --------->AHL20(2)  <---------LBD16        <----- ---------CCA1(2)  <---------TOE2(3)              --------->AHL20(2)  <---------LBD16     --------->ATHB12   ctatatctaacctagagaattgaggttggtactggataggcttctcaaaaaaaaaaatatatcacctttatttctggggaactagtattggatgactgga  8713900 ---------DOF2 --->ZmHOX2a(2) ===============================HOX2a_HOX2a ---->ARR14(2)                                                  ----------->GT1 -----ARR14(2)                                              <---------TOE2(3) ---->ARR11(3)                    ------->TEIL          <----------DOF2 -----ARR11(3)                   <---------GLK1(2) <---------ANAC58 -----AGP1               <------ZmHOX2a(1)         <---------ANAC46                         <-------- ----CCA1(2)         ---------->DOF2               <---------ANAC58      *TSS             ---------->ID1   tctttttttttttttttttgtgctaaaggatgactgaatcttattctgaattttcgtgctttaagaatgtgataagcttcttaagggtttttgtcttttt  8714000                                                                                         --------->ARR14(2)                                                                              <----------DOF2                                     <---------MYB52(1)                       --------->TOE1(3)                                     ----------->HVH21                    ------->GAMYB  <---------ARR14(2)                                    --------->LBD16                      <---------MYB46(2)                                   <---------ANAC55(1)                   <---------MYB52(2)                                   --------->ANAC55(2)                   <------------MYB.PH3(2)                                   <---------ANAC58                     <---------At4g35610                                   <---------ANAC58                     --------->At4g35610        <-                                   <---------ANAC46                 <-----------HVH21--------->At5g28300                                   <---------ANAC55(2)       <---------YAB1   --------->TOE2(3)    <- --DOF2    <----------DOF2<-----------GT1          ------->TEIL<------------CBF    --------->ZAT6  --   cttatatgtctctctttggagtttgtttttgcctcttccgtgactctagcatgtatcgcatttactattgtgtcaactaactttaacagtgaattctcta  8714100             ------->TEIL                                                                       ----- --------AHL20(2)                             <-----------GT1                                  <----- --------AHL20(1)                            <-----------GT1                                  <------ ------->AHL20(2)                  <---------ZAT18       --------->AHL20(2)                   -------   ttttatttatgtgtgtatgtgtctgaatagaaacttgtgcccattttttaacctctgaataaaaaaccaagttgaacataaaaacaaaatgtctgagatc  8714200                                                                                                   <-         <---------ANAC46                                                                          <-       --------->MYB52(1)                                                                       <----      ----------->TGA1                                                                     <---------AHL20(2)      ----------->HVH21                                                                 --------->AHL20(1)    --------->At4g35610                                                                --------->AHL20(2)    <---------At4g35610                                                            --------->AHL20(2)    --------->ZAT2                                  --------->AHL20(2)             <---------AHL20(2) ---->ATHB12                                   --------->SPL7            --------->YAB1<---------AHL20(2) -ZmHOX2a(2)                                 --------->LBD16  <---------AtLEC2    --------->AHL20(2) ---ARR11(3)         --------->YAB1        --------------->AtSPL8       <---------YAB1<---------AHL20(2) -->ARR11(3)    --------->AHL20(2)         --------------->AtSPL3    --------->ICU4--------->AHL20(1)   atttgtagctgacggagataaaataatcagcctcattgtttctcatccgtactataaattgttttcatggcattatcatcaaaaaaaaattattttataa  8714300                                             <-----------GT1                                          <---------ICU4             <---------ARR11(3)                                 --------->ARR11(3)                  --------->ARR11(3)                                 --------->AHL20(1)       --------->AHL20(2)                                 --------->AHL20(2)       <---------AHL20(2)                <---------MYB52(1)<---------AHL20(2) --------->AHL20(1)            <---------LBD16      <---------AHL20(2)  <---------AHL20(1)            ------>ZmHOX2a(2)    <---------AHL20(1)  <---------AHL20(2)         --------->YAB1--------->MYB59<---------AHL20(2)--------->AHL20(2)        <---------ATHB12----------->GT1 --------->ANAC55(2)         --------->YAB1 ---------DOF2----------->GT1    <---------ARR11(3)  --------->AHL20(2) --------DAG2 --------->LBD16   --------->AHL20(2)  <---------AHL20(2) --------->YAB1              -- -------GT1--------->ARR14(1) --------->AHL20(2)    --------->AHL20(2)<------ZmHOX2a(2) --------->LBD16   actttatccaatgatccggttaattttggtaaaaatatatttaagtattacaaaataaatttatattcaaggatcatcacacatttattccgagtttaga  8714400                                                                                                    <                                                                                            <--------                                                                                            ---------                                                <---------YAB1                              <--------            --------->ZAT6            <-----------GT1                ------>MYB83          <---------AHL20(1)          <-----------GT1         <---------TOE1(2)                --------->AtMYB61       --------->AHL20(1)        <---------WOX13(1)  <---------GLK1(2) <-----------GT1      <---------MYB59         --------->AHL20(2)  <-----------GT1      --------->MYB52(1)   <---------GLK1(2) --------->HSFB2a(2) ------>ZmHOX2a(1) - ------->YAB1       --------->YAB1<---------TOE2(2)   <-----------GT1------>MYB46(1)     ------->TEIL   atattaactgattaacacttaaacataactgaatcgcatgttaccagattaccatttaacttgtctggaccaaacctagacatcctacatgaatataatt  8714500  Previous    Next  AGI:  At2g20180.1    Description:  PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5); transcription factor. similar to transcription regulator [Arabidopsis thaliana] (TAIR:AT4G28811.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63786.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 8711105    to: 8713973    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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