Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                <---------MYB52(1)       ------>MYB83                                             ---          <---------CCA1(2)       <---------KAN4(2)                                               ---     ------->TEIL   --------->ANAC46     ------>MYB46(1)         <----------DOF2          <---------At4g35610    <---------CCA1(2)    --------->MYB46(3)              ----------->RAV1(2)              --------->At4g35610  --------->ANAC55(2)<---------ZAT18<-----------GT1    <-----------GT1        --------->MYB46(3)  ---   ttttatgtatctatatccattagcgcaaccatacagaataaccaaatcaccaagtttttacctgaagcttttgatcaagaacaactggagggagaagacc  8602200                                                                          --------->ARR14(2)                                                                          <---------ARR14(2)                                                          --------->GLK1(1)                                                          <------ZmHOX2a(2)                                                          <---------GLK1(1)                                                         --------->GLK1(2)<---------ARR11(3)                                                         --------->ARR11(3)                                                         <---------ARR11(3)                                                         <---------ARR14(3)         <---------ANAC58                   <-----------RAV1(1)      --------->ICU4         <---------ANAC58                 ========================HOX2a_HOX2a       <---------YAB1                     <----------DOF2<---------AGP1 ------->TEIL       --------->ICU4                     ------>ZmHOX2a(1)------>ZmHOX2a(2)  --------->ANAC58                        =======================HOX2a_HOX2a  --------->ANAC58                   --------->ANAC58    --------->ARR14(2) ------>AtLEC2                   --------->ANAC58        <---------ARR14(2)            --------->ANAC58 ------>ANAC46                   --------->ANAC58   <---------ANAC46 <---------ATHB12  --------->ANAC46 ------>ANAC58                 ---------->DOF2 <---------REM1(1)--------->ANAC46       --------->ANAC58 ------>ANAC58       <----------DOF2 --------->ANAC58   <------ZmHOX2a(1) --------->ARR11(3)   ------   acgcaagtaatgagtgtctctctctttctcagtgaaagcaagtcctttgttgtagcgaggatctctcagcaatgaatatccactgaaacaagaaacagag  8602300                   <-----------GT1                  --------->AHL20(2)                  <---------AHL20(2)          ----------->GT1        <---------ANAC46                 --------->LBD16        <---------ANAC58                --------->ANAC46        <---------ANAC58               <---------LBD16 ----->GT1<---------ZAT6           <-----------GT1 <-----------RAV1(1)                  <-----------RAV1(1)   ttactaacttgagtgttaatttaaacacttagttatattaccacggagaagttatgttgctacctagaaacagagagagaccaaggagttatgttgtgct  8602400                                              ------->GAMYB                                       --------->AtMYB61          <-----------ARR10           --------->MYB46(3)          --------->ARR14(2)         ------>NtERF2          ------->TEIL            ------->GAMYB          <---------ARR14(2)     --------->ANAC58                                                ----     <---------At4g35610         --------->ANAC58   --------->GLK1(1)                           <----     <------NtERF2  --------->AtLEC2--------->DEAR3(1)                   <---------DAG2       -------     --------->At4g35610         --------->ANAC46   <---------GLK1(1)    <----------DOF2    <------ZmHOX2a(2)    <---------MYB46(3)        --------->MYB46(3)  <------ZmHOX2a(1)<------MYB46(1)        <------ZmHOX2a(1)   <---------RAP2.6(2)  --------->ANAC46   ----------->RAV1(1)     <------MYB83       ---------->DOF2   caatggtggctgaatcttctccatacacatcaacaacgccaccatcaacagaggatttcaagtctgagttggtcactttctccatcttgaaaggatcaat  8602500                                                  ---------->DOF2                                              <------ZmHOX2a(2)                                            <------ZmHOX2a(1)                            <----------ID1                                  --------->ARR11(3)                               <---------HSFB2a(2)                        ---------->DOF2  --------->HSFB2a(2)                ---------->DOF2 ----->YAB1          <----------ID1      <---------HSFB2a(2)         ---------->DOF2   ---------->DOF2 -----ATHB12      --------->DAG2  <---------GLK1(2)          --------->TOE2(3)  --------->ARR11(3) -->WOX13(1)     ---------->DOF2  <---------ARR11(3)        *TSS--------->MYB52(1) --------->HSFB2a(2)   gaaaacaatcccaaaaacaaaaagcgaaaagaagtagatttttctaggatcacaaaggaagaaacttaatggaaagaagaaaggtctggaaaagacaaat  8602600                                                    ------>MYB83                                                    ------>MYB46(1)                                                    --------->MYB52(1)             <---------WOX13(1)                                                 --------->ANAC46               <---------AHL20(1)                                              --------->ZAT18                   --------->AHL20(1)                                          --------------->AtSPL8                --------->AHL20(2)                      ----------->HVH21  <----------DOF2                   <-------TEIL    <---------AHL20(2)        <------ZmHOX2a(1)              <---------ZAT2                   --------->ANAC58  <---------AHL20(2)      <---------TOE2(3)      --------->ZAT14  <---------ZAT18           --------->ANAC58  --------->AHL20(2)  <---------ANAC58   <-----------HVH21 --------->At4g35610             --------------->AtSPL8  <---------ANAC58  --------->ALFIN1   <---------At4g35610     ---------->DOF2  <---------AHL20(2)  <   ggaagcttgaggatgcagagaggtgtcacactgaagaagacagctttgtacaccaaatggactctgaaagtgccacgtacaattaattgaaattaaatat  8602700                                                     --------->ZAT18                                                     <---------ZAT14                                                     <---------ZAT18                                        --------->ANAC46                                        <---------ANAC55(2)                                        --------->ANAC55(2)                                        --------->ANAC58                                            -                                        --------->ANAC55(1)                                       ---                                        --------->ANAC58                                         ----                                       <---------LBD16--------->ZAT6                             <---                          --------->ANAC58           --------->ZAT14                             ----                          --------->ANAC46      <---------ANAC46                                 <---                      <---------HSFB2a(2)       <---------ANAC58                             <-------           <----------DOF2--------->ANAC58      <---------ANAC55(1)  --------->TOE2(3)       -------- ---------ICU4   <---------AHL20(2)<-------TEIL <---------ANAC58   <---------ARR11(3)   ---------->DOF2   aagcattagttttctttatttattccataagcaaacatacacacggaattacttgtacactagatgacaaatcttaagttataacttaaacaaaggaagt  8602800                                          <---------ANAC58                                          --------->ANAC55(2)                                          <---------ANAC55(2)                                          <---------ANAC58 -------->ANAC46                       <---------ARR14(2)                              --------->ANAC58 ------>ANAC46                    <-----------HVH21                                <------ZmHOX2a(1) ----->ZAT18                  --------->TOE2(2)    --------->ANAC58               <----------ID1 ----TEIL                 <---------MYB52(1)       --------->ANAC58           --------->MYB52(1) ----->ZAT14             <-------GAMYB <---------GLK1(2)                     ------->GAMYB ------ZAT18            <------MYB83 ----------->ARR10------->TEIL       <----------ID1--------->ANAC58 --------AtSPL8         <------MYB46(1)--------->ARR14(2)       <-------TEIL--------->MYB46(3) ------->AtSPL8        --------->MYB59<---------At4g35610   <---------YAB1  <---------MYB52(2)   acaccacatagcttcgcctataagttcggttacctaggtcagatacttgtctaacgcatcttatgatacatgaagacaacaaacaggacaagtaagtctg  8602900                                                                                                    -                                                                                                    -                                                                                                    -                                                                                             --------                                                                                             <-------                                                                                           ----------                               --------->ANAC58                ----------->GT1          --------->AtLEC2                               --------->ANAC58    <---------TOE1(2)          ----------->HVH21     -           <----------DOF2     --------->ANAC46   ------>ZmHOX2a(1)----------->ARR10    ------>ZmHOX2a(1)      ---------->DOF2        ---------->DOF2  <-----------GT1 <---------TOE2(3)     <-----------HVH21   ------->GAMYB      --------->DEAR3(1)     <-----------GT1  <---------TOE1(3)<------ZmHOX2a(1)   --   ttcaacccaaaagctttttaagcacagacgttgaagccactactgatttatccttcgttttcttaaggtaaaatttgcacaggaccggtcctgcaacatt  8603000         <-------TEIL         ------->TEIL -------->ANAC58                                                                 <---------ARR11(3) -------->AtLEC2                                                                 --------->ARR11(3) -------->ANAC58                                                        <---------ANAC46 ->HSFB2a(1)                ------>ZmHOX2a(1)             <---------ANAC58     <---------ZAT6 --HSFB2a(1)             ------>MYB83          --------->ANAC46       --------->ALFIN1        <------ ->RAV1(1)               ------>MYB46(1)     <---------DOF5.7(2)    <---------ANAC58        <-------- -------->ANAC46    --------->REM1(1)      --------->DOF5.7(2)      <---------ANAC58   --------->HSFB2a(2) ------->LBD16      <---------ALFIN1     --------->YAB1   <---------ANAC58  <--------P <---------HSFB2a(2)   ccaggcaaatgtacatttcgcaacaccttcctgaatggcataatcgtaaacgacgttgtagagtgccaaggcttgggggtagagttcttccagactttta  8603100  Previous    Next  AGI:  At2g19900.1    Description:  ATNADP-ME1 (NADP-MALIC ENZYME 1); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor. similar to ATNADP-ME4 (NADP-MALIC ENZYME 4), malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor [Arabidopsis thaliana] (TAIR:AT1G79750.1); similar to ATNADP-ME3 (NADP-MALIC ENZYME 3), malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor [Arabidopsis thaliana] (TAIR:AT5G25880.1); similar to ATNADP-M Range:  from: 8598981    to: 8602560    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g19910.1    Description:  RNA-dependent RNA polymerase family protein. similar to RNA-dependent RNA polymerase family protein [Arabidopsis thaliana] (TAIR:AT2G19920.1); similar to RNA-dependent RNA polymerase family protein [Arabidopsis thaliana] (TAIR:AT2G19930.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65457.1); similar to hypothetical protein OsJ_000727 [Oryza sativa (japonica cultivar-group)] (GB:EAZ10902.1); contains InterPro domain RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855) Range:  from: 8602902    to: 8607839    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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