Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     --------->ARR11(3)                                                                                   <---------AHL20(1)                                                                                   <---------ARR11(3)                                                                                   --------->AHL20(1)                       ---------->DOF2                                           --------->ARR11(3)                     <---------TOE2(3)        ----------->RAV1(1)                <---------ARR11(3)                 --------->TOE1(3) <------MYB46(1)                --------->AHL20(2)  <---------AHL20(2)                 --------->TOE2(3) <------MYB83            --------->TOE1(2)     --------->AHL20(1)      --------->MYB52(1)      <---------TOE2(3)            --------->TOE2(2)     <---------AHL20(1) --------->ZAT18----------->GT1<---------REM1(1)--------->ZAT6    <---------AHL20(2)  --------->AHL20(2)   aatggcactaactgcgaaacgttaagaaagctaatgtaggtttctctccaacactagaaaacataagattaattaagtcagaaaatatttttttagtttt  8481100                                  <---------At4g35610                    --------->ANAC58                    ----------->GT1                    --------->ANAC58           --------->GLK1(1)      --------->At4g35610                                  <---------ARR11(3)           <---------GLK1(1)     ------------------------>ANAC81               <----------DOF2  -----         <------ZmHOX2a(1)     ---------->DOF2    ---------->DOF2 --------->YAB1       --------->ARR11(3)   ttcaaagatgaggaaatccaaaacgaaataacttaaagctgcaaaacaaaaaaaaagaatatagagaataagaacaattctcttttggacatcttcacaa  8481200                                                                                                <----                                                                                                <----                    <---------DAG2                                                             <-----                    <----------DOF2                                     <----------DOF2       <------                <-----------GT1                      ---------->DOF2  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <---------AHL20(2)                 <---------DAG2        ------>MYB46(1)     --------->MYB52(1)            --------->AHL20(1)              <-----------GT1          ------>MYB83      --------->MYB46(3)  ---------->DOF2<-----------GT1          <----------DOF2  --------->AHL20(2)      --------->ANAC58 ----->DOF2 --------->AHL20(2)  <-----------GT1<----------DOF2  <-----------GT1    --------->ANAC58   aagctaaagagaaattttttaactttttgatttaaaaccacatactttactttttgaaagaaaaaataacctatctttctatggcaagaacaaaccgtag  8481300                                                                                              -------                                               <---------CCA1(2)       <---------ARR11(3)     <------                                           --------->ARR14(2)         --------->CCA1(1)   --------->ATHB12                                           <-----------ARR10        --------->AHL20(2)    <--------ATHB1       --------->GLK1(2)                   ------->TEIL  --------->YAB1--------->ARR11(3)<---------YAB1   --------->ANAC55(2)                     <---------ARR14(2)       --------->YAB1       --------->ICU4 --MYB46(1)                                <---------ARR11(1)       <---------ICU4       <---------ATHB12 --MYB83           <-----------GT1        <---------ARR14(1)--------->YAB1          --------->ANAC46 ----AtMYB61   <---------ARR11(3)         <---------CCA1(2)<---------ATHB12   <---------AHL20(2) ---MYB52(1)   --------->ARR11(3)<----------DOF2        --------->AHL20(2)    --------->AHL20(2)<----   gtctcacataatctagagattttacaaaacattctctttacttcgtatcttatctccattaatcatctaataatatctaattaaacccacaatgattcgt  8481400                                                       --------->LBD16                                                --------->TOE1(3)                                                <---------MYB59                                                --------->TOE2(3) --------->HSFC1(2)                                               ----------------->AGL2                                               <-----------------AGL1           <-----------TBP                                               ----------------->AGL1 <---------ANAC46                 <---------RVE1(1)           ------>MYB46(1)      <---------HSFC1(2)           --------->ARR14(2)              <---------MYB59        <---------HSFB2a(1)           <---------ARR14(2)   <<<<<<<<<GT-1------>MYB83--------->ARR14(2)   <----------DOF2 -->ATHB12 --------->MYB52(1)   <-----------GT1----------------->AG   <---------LBD16           ----- ---MYB46(3) <------------MYB.PH3(1)       --------->AtMYB61      --------->HSFB2a(1) ---------->DOF2 -----MYB52(1)  <---------MYB52(1) --------->ZAT6    <---------LBD16 <---------LBD16<---------YAB1   tggcatagttgcataaccgatatttagtctagatttacctctaaaccaaacctaaaccggaaactagaaatttcggggttctttttataaaagagaataa  8481500                                       <------ZmHOX2a(1)<---------MYB46(3)                                    =======================HOX2a_HOX2a                             ==============HOX2a_HOX2a <---------DEAR3(1)                             =================HOX2a_HOX2a<------NtERF2            <------ZmHOX2a(1)                            *TSS    <------ZmHOX2a(1) <---------ABI4(1)          <----------ID1                           --------->ARR11(3)       ------>ZmHOX2a(2)      <---------ANAC46                           <---------ARR11(3)<---------ARR14(2)        <---------ANAC58                      ==============HOX2a_HOX2a     =====================================HOX2a_HOX2a                      =====================================HOX2a_HOX2a <-------GAMYB   ---------->DOF2    <------ZmHOX2a(1)====================HOX2a_HOX2a <---------ANAC58            -- ----->DOF2   <---------LBD16------>ZmHOX2a(2)      <---------DEAR3(1)<---------MYB46(3) --------->TOE2(3)   aagaagaaagaacatgcctggagaggagtgatcttagaggaggagaagaactgatcggcggtgatgaattcttggttgagtttaggacaaacattagtat  8481600                                                                                                    -                                                                                                    -                                                                               <---------ARR14(2)   -                                                              <---------HSFB2a(2)                   -            <---------MYB52(1)                                <---------HSFC1(1)                   <-       --------->ANAC58                                       --------->HSFB2a(2)    <----------DOF2-       --------->ANAC58           --------->ARR14(2)   ----------------->AGL1  --------->ARR14(2)<---     ---------->DOF2      --------->ARR14(2)         --------->ANAC58     --------->ANAC58       ----    <---------ATHB12      <---------ARR14(2)      ------>ZmHOX2a(1)       --------->ANAC58   -------- ------->At4g35610    --------->LBD16--------->ANAC46--------->ANAC58 <-----------HVH21   <----------   cagccaaacaagcccttagccttccccagttcttggaatccacaacgttctccttaagccaattcgagaacccttcaagcctatactctttataacctct  8481700         --------->ARR14(2)   <---------ARR14(2)   --------->ARR14(2) --------->LBD16 -------->LBD16 -------->ANAC58 -------->ANAC55(1)                                       ----------->RAV1(1) -------->ANAC58                                          --------->ANAC46                         -- --------LBD16                                            --------->ANAC58                        --- -------->ANAC46            <-----------HVH21             --------->ANAC58                     ------ ------REM1(2)            <------NtERF2                --------->MYB52(1)            --------->ANAC46 ---->P  <---------ARR14(2)--------->bZIP60(2)        --------->AtMYB61<---------ATHB12     --------- ->TOE2(3)     <------ZmHOX2a(2)                     --------->MYB46(3)<------ZmHOX2a(2)    --------- -GT1  --------->ANAC46   --------->LBD16    --------->YAB1   ---------->DOF2       ---------->DOF2--   acccggaacccgatacgatccatcgggccgggtcacgacgaatgcaaatataagaaccaccagcaaaagtccgatcaatatcgccatacagcacaagtaa  8481800 ----->GAMYB                 <---------YAB1 ------>MYB46(3)   ------->TEIL ---->DOF2    <---------ANAC58 >ANAC58      <---------ANAC58    --------->At4g35610                                         <------ >ANAC58      <---------ANAC46    <---------At4g35610 <---------YAB1                       <---------ARR11(3) ------->ANAC46--------------->AtSPL8             <----------DOF2                          --------->ARR11(3)   accgccagtagagtttccttgtacctgaaatatgagagctcaaagtttacatctttatgattcaatttgtgtctatgttttcaaagtcttgaagttcttt  8481900                 --------->At4g35610 ----------->HVH21                --------->DEAR3(1)  --------->ATERF1(1)               --------->RAP2.3(1) <---------ATERF1(1)               <------NtERF2      --------->ARR14(2)               --------->ATERF1(1)<---------ARR14(2)              <---------RAP2.3(1)--------->ATERF1(1)              <---------ATERF1(1)<------NtERF2              ------>NtERF2 --------->ALFIN1                            <---------WRKY38(1)             --------->DEAR3(1) --------->LBD16                     ------->GAMYB             <---------DEAR3(1)<---------ANAC46                  --------->MYB52(1)            --------->RAP2.3(1)<---------ANAC58              --------->ANAC58            --------->ATERF1(1)<---------ANAC58             --------->SPL7          <---------WOX13(1)     <---------ANAC58       ----------->HVH21              <------ZmHOX2a(1)------->GAMYB     <---------ANAC58     <-----------RAV1(1)           ------>NtERF2   <---------WRKY12  <---------ALFIN1     <---------ANAC46   ----------->RAV1(2) <------ZmHOX2a(1)--------->ANAC58   <------ZmHOX2a(1) ----DOF2  <---------ATERF1(1)<---------LBD16          --------->DEAR3(1)--------->MYB52(1)   gattcttacttgtaggcgccgatgaagcctgtggcggagacgacgaggatgagaacgccgaggacgacaacgggccaacggaggagattgacacactcgt  8482000  Previous    Next  AGI:  At2g19580.1    Description:  TET2 (TETRASPANIN2). similar to TET1/TRN2 (TETRASPANIN2) [Arabidopsis thaliana] (TAIR:AT5G46700.1); similar to unknown [Populus trichocarpa] (GB:ABK93550.1); contains InterPro domain CD9/CD37/CD63 antigen; (InterPro:IPR000301) Range:  from: 8479216    to: 8482235    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g19582.1    Description:  other RNA Range:  from: 8481528    to: 8482303    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version