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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
------>
ZmHOX2a(1)
--------->
ICU4
<---------
YAB1
--------->
GLK1(1)
--------------->
AGL15
<---------
GLK1(1)
>>>>>>>>>
ARR2
--------
--------->
TOE2(3)
<---------
ARR11(3)
>>>>>>>>>
ARR1
--------
---------->
ID1
--------->
ARR11(3)
--------->
ATHB12
--------->
ANAC55(2)
<-----------
GT1
---------->
DOF2
--------->
ARR11(3)
--------->
YAB1
-----
--------
YAB1
--------->
ANAC46
<---------
ZAT14
<---------
ARR14(2)
--------->
TOE2(3)
-------
AHL20(2)
<---------
AHL20(2)
--------->
ZAT14
--------->
ARR14(2)
------->
GAMYB
-------
AHL20(1)
--------->
AHL20(2)
--------->
CCA1(2)
<---------
YAB1
--------->
ANAC46
--
-----
AHL20(2)
<---------
YAB1
--------->
ANAC46
<---------
ARR11(3)
<-----------
GT1
--------->
MYB46(3)
tatttttccttattgattatcaattttatatacacaaaaagatatcagtgaagaacttatgattgtgcatattttctgtccatacataaccacaatatta
8228300
<---------
RVE1(1)
<---------
CCA1(1)
<---------
ARR11(3)
--------->
AHL20(2)
<---------
YAB1
--------->
AHL20(2)
->
YAB1
<---------
AHL20(2)
<<<<<<<<<<
GT-3b
<---------
AHL20(2)
--------
->
TOE2(3)
<---------
AHL20(2)
--------->
YAB1
<---------
AHL20(2)
--------->
AHL20(2)
---->
WOX13(1)
--------->
ARR11(3)
--------->
AHL20(2)
--------->
ARR11(3)
<----------
DOF2
------->
YAB1
--------->
TOE2(3)
<---------
YAB1
----------->
GT1
<---------
ARR11(3)
---------->
ID1
atcaaaaatttaaatttatcttagatatttttcttatgataattcaatactgtataattttttaaaatctatacattacagttttgtcttttaaatcata
8228400
<-----
----------->
GT1
------
<---------
HSFB2a(2)
<---------
AHL20(2)
<-------
--------->
HSFB2a(2)
<---------
AHL20(1)
<---------
TOE1(3)
--------->
ARR11(3)
--------->
AHL20(1)
------>
ZmHOX2a(1)
<-------
<---------
ARR11(3)
--------->
AHL20(2)
--------->
TOE2(3)
<-------
--------->
RVE1(1)
--------->
AHL20(2)
<---------
YAB1
<---------
TOE2(3)
->
YAB1
--------->
CCA1(1)
<---------
AHL20(2)
<---------
ANAC46
<---------
ZAT6
-----
ttctaatatgcataaatatctagaaaaatactaactccatagaattaaatttcttatgtaagtttagtatattatcctaaatttgtgttaatgttaagat
8228500
--------->
AHL20(2)
<---------
AHL20(2)
----
ARR11(3)
--------->
AHL20(2)
----------
--->
ARR11(3)
<---------------
AGL15
<---------
--
YAB1
====================================================================
--
TOE2(3)
<-----------------
AGL2
<-----------
GT1
--
TOE1(3)
----------->
GT1
----------->
GT1
--------->
GLK1(2)
<------
ZmHOX2a(2)
---->
GLK1(1)
---------->
DOF2
--------------->
AGL15
<---------
GLK1(2)
<------
ZmHOX2a(1)
ttctactaaatttgatactcaaaagtaaaaagtttctcttaatagaaaaaaataaatatagattctcttacattacaggatcagagtataaaaccagttt
8228600
--------->
AHL20(2)
--------->
YAB1
<---------
YAB1
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
ARR11(3)
--------->
ARR11(3)
<---------
GLK1(1)
<---------
YAB1
--------->
GLK1(1)
----------->
TBP
----->
AGL15
--------->
YAB1
<---------
YAB1
<-------
TEIL
--------
------
AGL15
<XXXXXXXXXXXXXXXXXXXX
MIR4243
<-----------
GT1
<------
ZmHOX2a(1)
======
MADS_MADS
<---------
YAB1
--------->
AHL20(2)
---------->
DOF2
---------->
DOF2
aagtaaacaatgtttcaaaaaacagtatgatatctgaaattttaattataaaaccaaaaatccaaagtcaaatatacgttttccaagtgagaaaggaccc
8228700
<---------
ICU4
--------->
YAB1
------->
GAMYB
--
*
TSS
<---------
YAB1
--------->
MYB52(1)
<-
--------->
ATHB12
<---------
ICU4
<----
--------->
MYB46(3)
--------->
ICU4
<----
-------->
P
<---------
YAB1
---------->
ID1
------->
GAMYB
<---------
ATHB12
<---------
ANAC46
--------->
MYB46(3)
------>
MYB46(1)
<---------
ANAC58
------------>
CBF
--------->
YAB1
--------->
YAB1
--------->
ALFIN1
<------
->
PCF2
<-----------
GT1
------>
MYB83
--------->
MYB46(3)
---------->
DOF2
<---------
ANAC58
ataaacaattaa
caaccattgatgatcaccaaatcataatcaacggtcgaaatgaatgaaaaataaaagtctgaaacggtggagagtttcgtcgttttga
8228800
------>
ZmHOX2a(1)
--------->
At4g35610
--------->
ALFIN1
--------->
ARR14(2)
<---------
ANAC46
<---------
ARR11(3)
<---------
DAG2
<---------
ANAC58
--------->
ARR11(3)
<----------
DOF2
<---------
TGA1a
--------
---------->
DOF2
<---------
ARR14(2)
===========================
bZIP_DOF
--------
<---------
YAB1
<---------
CCA1(2)
--------->
At4g35610
<---------
ANAC58
--------
--------->
GT1
<---------
ARR14(2)
--------->
ZAT2
--------->
TGA1a
xxxxxxxxxxxx
--------
MYB46(3)
--------->
ARR14(2)
<---------
GLK1(2)
<---------
O2
----------->
GT1
-----
ANAC58
<---------
ANAC58
------->
GAMYB
--------->
O2
----------->
HVH21
-------
-----
ANAC58
<---------
ANAC58
=====================================
MYC_MYB
--------->
ALFIN1
---
YAB1
<---------
ANAC46
----------->
RAV1(1)
<---------
ANAC46
------>
ZmHOX2a(2)
gtggttataaaaagagaaggcgtatatctcctctgcaacagaagctcgctttctctctctctctctcgtgtgtgtgtgtgtgatcgagtggtgaaacgac
8228900
<------
NtERF2
--------->
CCA1(2)
<---------
ANAC58
--------->
GLK1(1)
<---------
DEAR3(1)
<---------
ARR11(3)
<---------
ANAC46
<---------
At4g35610
<---------
YAB1
<---------
ANAC58
--------->
At4g35610
----------->
GT1
--------->
ALFIN1
>>>>>>>
GRF7
--------->
ARR11(3)
------>
ZmHOX2a(2)
--->
HVH21
<-----------
HVH21
--------->
ARR11(3)
->
ANAC58
--------->
ARR11(3)
<---------
AGP1
->
ANAC58
<---------
MYB52(1)
<---------
ARR11(3)
--------->
WRKY12
xxxxxxxxx>
smallRNA(se3)
--------->
HSFB2a(2)
--------->
HSFB2a(2)
<---------
MYB52(1)
<---------
GLK1(2)
---->
RAV1(1)
<---------
HSFB2a(2)
<---------
HSFB2a(2)
<-------
GAMYB
<-----------
GT1
agagaggggcgtcgttttgttgatttcttctgggtgaag
atgtcaggtctcgaagatatcaagaacgagaccgttgatctg
gtattatttcgattctctt
8229000
<--
<---
<------
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<----------
DOF2
<---------
ARR11(3)
<---------------
AGL15
<---
--------------->
AGL15
<---
<---------
ANAC58
--------->
ARR11(3)
<---------
AtLEC2
<---------
AGP1
<---------
ZAT6
---------->
DOF2
<---------
ANAC58
--------->
AGP1
--------->
AHL20(2)
<---------
ICU4
<---------
ANAC46
--------->
ARR14(2)
<----------
DOF2
<---------
AHL20(2)
--------->
YAB1
--------->
ATHB12
<---------
ARR14(2)
ctcgcttaaattcttcgagtttttaatttcatttttagtgtttattcatcatgcccacaaagtgttcgatgatttgcttgaatgagaaatagatctgttt
8229100
<---------
AtLEC2
<---------
ANAC58
<---------
ANAC58
<---------
ANAC46
--------->
MYB52(2)
-----
GAMYB
<---------
ANAC58
<---------
DAG2
<---------
YAB1
------>
ZmHOX2a(2)
------
ANAC58
<----------
DOF2
<---------
ATHB12
============
---
MYB52(1)
<---------
ANAC58
<-----------
GT1
<---------
At4g35610
<----------
DOF2
------
ANAC46
<----------
DOF2
<---------
ICU4
<----------
DOF2
--
------
ANAC58
<-----------
GT1
<-----------
GT1
<---------
ATHB12
<---------
DAG2
<--
cgttgttgttccttgcatggtttcacgtttgattcttttacccttttttcttcaaatcattttccgatgattctactccttttttctttgatcgaaaact
8229200
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AGI:
At2g18960.1
Description:
AHA1 (ARABIDOPSIS H+ ATPASE 1); ATPase. Identical to ATPase 1, plasma membrane-type (AHA1) [Arabidopsis Thaliana] (GB:P20649;GB:O64626); similar to AHA3 (Arabidopsis H(+)-ATPase 3), ATPase [Arabidopsis thaliana] (TAIR:AT5G57350.1); similar to AHA2 (Arabidopsis H(+)-ATPase 2), ATPase [Arabidopsis thaliana] (TAIR:AT4G30190.1); similar to AHA9 (Arabidopsis H(+)-ATPase 9), hydrogen-exporting ATPase, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT1G80660.1); similar to Plasma membrane ATPase 4 (Proton pump 4) (GB:Q03194); similar to plasma membrane H+-ATPase [Lycopersicon esculentum] (GB:AAB17186.1); similar to H(+)-transporting ATPase
Range:
from: 8228713
to: 8234704
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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