Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  --------->ANAC58                                              <---------ICU4                                              --------->YAB1                                             <---------ATHB12                                            ------>MYB83                                <----------DOF2 --------->ANAC58   ---------->DOF2     <---------ICU4  --------->YAB1         ------>MYB46(1)       --------->YAB1 --------->AHL20(2)  <---------ICU4--------->YAB1    ----------->GT1                 --------->ZAT6 ------YAB1         <---------ATHB12       --------->WOX13(1)    <---------YAB1  ------>ZmHOX2a(1)  -   caattcaatattacaaaaatcaataatcccaaggctttcataaaccaatcaagacatgtgaaaaactatcaaagttcgagttcctaaacactaatccaca  8203800                                                                               <---------ICU4                                                                              --------->ICU4                                                                              <---------ATHB12                                                                              <---------YAB1                                                    ------->GAMYB        -------->P                                                   <---------MYB52(2)    ------>MYB83                                                   --------->MYB46(3)    ------>MYB46(1)                                                --------->ANAC46       ------->GAMYB                                              <---------ALFIN1         --------->AtMYB61        <---------ICU4                        --------->ANAC46        --------->MYB46(3)    <------ZmHOX2a(1)        <---------YAB1 ------>ZmHOX2a(1)         <---------MYB52(2)       >>>>>> -------->TOE1(2)    ------->TEIL     ----------->ARR10        --------->AHL20(2)  ----------------->AGL1   gacataggaaacattacaaactgaacctcacattatagcttagttcctccacaacaaacttctaattcaataaccaacccatgattccaaaatggttcta  8203900            --------->YAB1          ------>MYB83              <---------YAB1          --------->MYB52(1)      -------->HAHB4          ------>MYB46(1)         --------->YAB1        <---------MYB111(1)       <---------ICU4        <---------MYB46(2)       --------->ICU4                                                   <--        <---------MYB59        --------->YAB1                                                    ----       --------->ANAC55(2)    <---------YAB1                   <<<<<<<<<WRKY18          <---------HSFB2a(2)   -------->HAHB4           --------->TOE2(3)   <---------AHL20(2)                  <----------DOF2   --------->YAB1      --------->ANAC58  ----------->GT1     <-----------HVH21 ---------->DOF2   ----   <---------ICU4      --------->ANAC58------->TEIL     <----------DOF2 <----------DOF2 --------->HSFB2a(2) >ZML2 <---------ANAC55(2)  --------->YAB1      --------->AHL20(2)    --------->At4g35610       -----   gctaataatacctaacataatcaacaagaaccataataatgaatcgaaatataaatttctttctgtcaaaacagctttcaacaaagctttctagtaacat  8204000                                 --------->At5g28300       <----------ID1           ----------->GT1 -------SPL7                  <---------ZAT14                 ----------->GT1 ----->TOE2(1)         <---------ARR14(2)                    <---------TOE1(3) ----->TOE1(1)  <----------ID1--------->ZAT14                <---------TOE2(3) ---------->AtSPL8     --------->ARR14(2)       --------->ANAC46  ---------->DOF2                 ---   cgtaccaataccacaaatgagacaaaattcgctacagtaaaacaaaatcaacaccacaaatttagggtaaaagtcaagaagagcaaactcaccaatttcg  8204100                                                                                                  <--                                                                                                *TSS                                                                                             --------                                                                                            <--------                                                                     >>>>>>>GRF7      --------->WRKY12             --------->At4g35610                                  <-----------HVH21   --------->WRKY38(1)             --------->ZAT2                                    ======================================             <---------ZAT2                              --------->ATHB12             ----------->HVH21             <---------At4g35610                         --------->YAB1  <-------TEIL --------->WRKY45   <---------ARR11(3)            --------->TOE2(3) --------->TOE2(3)<-----------RAV1(2)------>NtERF2<  <---------ATHB12          ------------>CBF      --------->YAB1 <---------MYB46(3) <---------At4g35610 --------->CBF          ----------->GT1     <---------ZAT6     <-------GAMYB        --------->At4g35610   accaataacttcttcagctcgataaccagtaacaatctcaaaaacagtgttaacataaatgatagggttgtcaggttcaagagcatcgctgaccacaaac  8204200         <---------SPL7        <---------ANAC58        <---------ANAC46              <---------ARR14(2)        <---------ANAC58              <---------GLK1(2)        --------->DEAR3(1)         --------->ANAC58       <------NtERF2               --------->ANAC58       --------->ATERF1(1)      <---------ARR14(2)                         --------->LBD16      <---------RAP2.3(1)     --------->ANAC46                            --------->ANAC58      <---------ATERF1(1)     --------->LBD16                             --------->ANAC46      ------>NtERF2          <---------HSFB2a(2)                          --------->DEAR3(1)     <---------DEAR3(1)      --------->HSFB2a(2)                          --------->ANAC58     --------->DEAR3(1)     <-----------------AGL1               ------>MYB46(1)    --------->ATERF1(1)     <---------LBD16                      ------>MYB83    --------->RAP2.3(1)     ----------------->AGL1            --------->HSFB2a(1)   <---------ATERF1(1)     ------>MYB83                       --------->HSFC1(2)  --------->ANAC58         --------->MYB52(1)                 <---------HSFC1(2)  --------->TGA1a          -------->P --------->ARR14(2)      --------->MYB46(3)  <---------DEAR3(1)      --------->MYB55(1)                  <---------HSFB2a(1)                   -  --------->O2           --------->MYB46(3)                 ------>MYB83=============================  <---------O2           <---------MYB111(1)              <---------MYB46(2)                <--------  <---------TGA1a        <---------MYB59                  --------->DEAR3(1)                ---------  ==================================MYC_MYB               --------->MYB46(3)        <---------At4g35610  --------->ANAC58       <---------MYB55(2)               <---------MYB52(2)   --------->bZIP60(2) <-  --------->ANAC46       --------->AtMYB61                <---------MYB55(2) <---------ALFIN1   ----- -------ALFIN1           <---------MYB46(2)     <---------MYB52(1)--------->MYB46(3)--------->At4g35610 ->AtMYB61   <-----------RAV1(2)--------->ARR14(2)       --------->ANAC46<---------LBD16   --------->DEAR3(1) -MYB52(2)----------->HVH21------>MYB46(1)      --------->DOF5.7(2)     ============================= ===========MYC_MYB      <---------MYB111(2)   <-------GAMYB------>MYB46(1)------>NtERF2<---------ALFIN1 ---------ALFIN1<------ZmHOX2a(1)--------->MYB52(1)    <---------ALFIN1 ------>ZmHOX2a(1) --------->MYB46(3)   ccacacggcgccgtgccaggaagactacctaccggaaacggaatcgctccgttatctccaccgaaccatccatcctccgccacttcatctccaccgctga  8204300                                                                                      <------ZmHOX2a(1)      <-----------GT1                            ---------->DOF2                   <-----------RAV1(2) ----->ZmHOX2a(2)                          --------->ANAC46                      ----------->RAV1(1) =====HOX2a_HOX2a                        --------->ANAC46                        ==================== -At4g35610     --------->ANAC46         ----------->RAV1(1)                   <---------At4g35610 >At4g35610     --------->ANAC58        --------->MYB46(3)                     --------->At4g35610 -----ZmHOX2a(2)--------->ANAC58       --------->ANAC58                       --------->ANAC46   <--- ------>ARR10 <---------ALFIN1         --------->ANAC58     <---------ZAT18 ------>ZmHOX2a(1)    <--- ======HOX2a_HOX2a                   --------->ANAC46   *TSS--------->ZAT18--------->TOE2(3)     ----   gatcggaatcactatcccactccatttgattttgcatacacacccacaaaataaagcttaagcccactaatcttcttcctcagcaacaggagaagagacc  8204400                                           <------MYB46(1)                                           <------MYB83                                    <---------ARR11(3)                                    --------->ARR11(3)                                   <---------CCA1(2)                --------->DAG2  <----------ID1                   <---------GLK1(1)               ---------->DOF2 ========RAV                       --------->GLK1(1)           <------ZmHOX2a(1) ------HSFB2a(2)              <---------At4g35610             ----------->GT1 --------RAV1(2)             --------->GLK1(2)            <---------ALFIN1                     ------ ----->HSFB2a(2)           <------ZmHOX2a(1)             <---------REM1(2)                  ---------   cagaagaacaaagtttgattttgaatcgaggaatctgatatctgtaggtaatcgaagtctccacaggaaaaaagttccaaactttagacaaacccagaaa  8204500                                                                                                    <                                                                                                   <-                                                                                                 ----                                                                                                 ----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                               ------                                                                                               ------                               --------->ARR11(3)                                              ------                               <---------GLK1(2)                                               ------                    --------->CCA1(2)                                         <------MYB83    <------                <------ZmHOX2a(1)                                <---------At4g35610    --------->HSFC1(2)          <------ZmHOX2a(1)    <---------ARR14(2)               --------->GLK1(2)       <---------HSFC1(2) --->GLK1(1) <-----------RAV1(2)                              <------ZmHOX2a(1)  --------->MYB52(1)-- >LBD16<---------LBD16         --------->ARR14(2)       ---------->DOF2       <------MYB46(1)<-------   tcgtcttcttcaggaacaggagatagaagaacagattttgaaatggaatcgagcgaagaaaagaggaatctgatatttgtaggtaatggaagtctccacc  8204600                                                <---------ETT(2)                                                <---------MYB46(3)                                              <-------GAMYB                                             <---------DEAR3(2) ---------ALFIN1                             <------MYB46(1) --------ZAT18                               <------MYB83 ----->ABI4(1)                              <---------DREB2C(2) -->NtERF2                                  <---------MYB46(3) ---->DEAR3(1)                              <---------DEAR3(1) ---->DREB2C(2)                           <-----------HVH21 -->GAMYB                               --------->MYB59 --->DEAR3(2)                         --------->ARR14(1) --->ANAC46                         --------->ATHB12 --->ORA47(2)           >>>>>>>>>TBF1--------->ARR11(1)                                   <---------- --->MYB46(3)  <------ZmHOX2a(1)   ----------->ARR10                                   --------->TOE2(3) ---ATERF1(1)------------------------>ANAC81--------->MYB55(2)                         <----------DOF2 ------->DEAR3(1)    >>>>>>>>>TBF1 <---------YAB1  ----------->HVH21          <----------DOF2 --ALFIN1   <------ZmHOX2a(1)    <---------At4g35610       <-----------ARR10  <---------DAG2        <   gcccacttctaagaggaggagaagaagaagaagagagatgattcggtcggtcgatgactcggctcttctcagtgcctctccttttccatctttaaccaga  8204700  Previous    Next  AGI:  At2g18915.1    Description:  LKP2 (LOV KELCH PROTEIN 2); ubiquitin-protein ligase. Identical to Adagio protein 2 (ADO2) [Arabidopsis Thaliana] (GB:Q8W420;GB:Q9C5S6); similar to ZTL (ZEITLUPE), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G57360.1); similar to FKF1 (FLAVIN-BINDING KELCH DOMAIN F BOX PROTEIN), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G68050.1); similar to ZTL [Ipomoea nil] (GB:ABC25060.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN82181.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43219.1); contains InterPro domain PAC motif; (InterPro:IPR001610); contains InterPro domain Kelch repeat type 1 (Int Range:  from: 8201654    to: 8204356    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g18917.1    Description:  other RNA Range:  from: 8204196    to: 8205185    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version