Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              ------>ZmHOX2a(2)                           <------ZmHOX2a(2)                           <---------At4g35610                           --------->CCA1(2)                           --------->At4g35610                          <---------ARR11(3)                          <---------ARR14(2)                          --------->AGP1                          <---------ARR14(3)                          --------->ARR14(3)                --------->ATHB12                          --------->ARR11(3)       --------->YAB1                          --------->ARR14(2)    <---------CCA1(2)                                  --                         --------->GLK1(1)   <------ZmHOX2a(2)     ------>ZmHOX2a(2)            -----                         <---------GLK1(1)  <---------ARR11(3)  --------->ATHB12          --------->YAB1                        ----------->ARR10   --------->ARR11(3)<---------WOX13(1)      ---------->DOF2  ---------->DOF2  <---------AtLEC2    <-----------HVH21   <-------TEIL     --------->ANAC46   <xxxxx   gagagaaagaaacaagcgtaggcatggagatctgcctataccatcagatcatatcatcaaattcattgatcggcaaactcgaaaccgtttaagcacaatc  8163100                                                                          --------->ICU4                                                                          <---------YAB1                                                                         --------->TOE2(3)                                                                        --------->YAB1                                                                        <---------ICU4                                                                        --------->ATHB12                                                                       --------->ICU4        <---------ANAC58          --------->LBD16                      <---------ATHB12        <---------ANAC58        <---------LBD16                 --------->ANAC58                 <--- --------->ANAC58              <---------ATERF1(1)              <----------ID1                ------- --------->ANAC58            <---------ANAC58                   --------->ANAC58             <------- -------->DOF2   <---------ARR14(2)   <-------MYC3              --------->ANAC46        ---------->ID1 ---->YAB1       --------->ARR14(2)   ------->MYC3            ---------->DOF2          <------------- xxxxxxxxxxxsmallRNA(i)      <---------ANAC58                 --------->MYB52(1)    <----------DOF2 <   acaaagcaaggcttgcacaaatatgccgatggcctccgcatatggtttgcagcgagagacaacttaacgccaaatcattagtatttctttgtttttttcc  8163200                                                                         <-----------GT1                                      --------->ARR11(3)               --------->AHL20(2)                                      <---------ARR14(2)           --------->AHL20(2) -------DOF2                          --------->ARR14(2)           <---------AHL20(2) --->ID1                             <---------CCA1(2)             <---------AHL20(1) ----GT1                  <---------AHL20(2)                       --------->AHL20(1) -----------ANAC81   --------->AHL20(2)                           --------->AHL20(2) ---------YAB1     ----------->GT1<------NtERF2             <----------DOF2                     -----   ttttgattttaagtctaaatcaagttaataaatggctgcatatattgtaaaccaggttttttctttgaataaatttaacaatttttcaaaaaaaaaaaaa  8163300                                                                                                 ----                                            --------->At4g35610                                 <----                                            <---------At4g35610                                ------              <---------SPL7               --------->GLK1(2)                                 --------             <---------ANAC58      --------->CCA1(2)                                         --------             <---------ANAC46      --------->GLK1(1)                                        <------NtERF2      <---------HSFB2a(2)         --------->ARR11(3)                                       ------>NtERF2      --------->HSFB2a(2)         <---------ARR11(3)       ---------->DOF2           <-----------RAV1(1)   --------->ARR11(3)           --------->ANAC58      ---------->DOF2              <---------ANAC46 ----->DOF2  <---------ANAC58   --------->ANAC58    --------->At4g35610      ------>ZmHOX2a(1) ------   aagaacatctggatgtcgtacaatagcttcttgcaagatatcaagaagctgatcagcaaagaaaagctcggtaatcttcctcgcgtcttgtggcaccaat  8163400     --------->MYB52(1)  --------->ANAC58  --------->ANAC58 ----->YAB1 -----ATHB12                                                                                      --- >MYB46(1)                                                                                 --------->At4g35610 ->AtMYB61                 <---------REM1(1)                              --------->ARR14(2)      --- ->MYB46(3)              <---------ANAC46       <---------YAB1            <---------ARR14(2)      --- >MYB83       --------->At4g35610       --------->GLK1(2)<----------DOF2 --------->GLK1(1) <---------At4g35610   cgaaacgaaacagagccactgactccatcgtgtagcatcgcgattccattttcatcgagctttcgcttcttcaacatatccatggtcgaagatagcagcc  8163500                                                  <------ZmHOX2a(1)                                                <---------TOE1(2)                                                --------->SPL7                                              --------->TOE1(2)                                            <-------TEIL                       --------->AHL20(2)                                    <------ZmHOX2a(2)                        ------>ZmHOX2a(1)    <----------DOF2                 =====================HOX2a_HOX2a        --------->TOE1(3) ------>ANAC58                     --------->ARR11(3)  <---------ICU4       --------->TOE2(3) ------>ANAC58        <---------ZAT14   <---------TOE1(2)          <---------ARR11(3)          <----- ------>ANAC46    --------->ATHB12 <---------ARR11(3) --------->ICU4  <----------DOF2 <-----------GT1   aaggaactttgtgggaagaatgagtgaagttagaagagatcacatgttcgtaggacataattaagcctagctctttttccttaaaatataactatagcat  8163600                                                                                                 ----                                              --------->ATHB12                                 ------               <---------AHL20(2)           <---------WOX13(1)                               <-------       ---------->DOF2                     <------------CBF                              ============     --------->AtMYB61            --------->YAB1                                         <---------DAG2    --------->ANAC46  <---------ARR14(2) --------->AHL20(2)                              <----------DOF2  --------->REM1(1)   --------->ARR14(2) <---------AHL20(2)                          --------->ANAC46 -------CBF    --------->AHL20(2)<-------TEIL<---------AHL20(2)                    --------->ANAC46<-   tggtacaccaaaagaaattaaacgtattcgtcaaattcatagtttaattgattagagtagatgagaaaaccatttgctgtttcatacccgacttttttcc  8163700         --------->ANAC58         <---------ANAC55(2)    ----------->HVH21   <-------MYC3   ------->MYC3  <---------ANAC46  <---------ANAC55(2)  --------->TGA1a  =====================bZIP_DOF  ----------->GT1  --------->ANAC55(2)                                                                      ------>ZmHOX2a(2)  <---------TGA1a                                                                         <---------At4g35610  --------->O2<---------TOE1(3)                                                           --------->At4g35610  <---------O2<---------TOE2(3)                                                     --------->GLK1(2) ----->WOX13(1)                                          <----------DOF2           ------>MYB46(1) ------>CBF ---------->DOF2                          <----------DOF2               ------>MYB83 ----GT1 --------->ANAC58                        <----------DOF2           --------->HSFB2a(2) ===========bZIP_DOF                         <<<<<<<<<<GT-3b               <---------HSFB2a(2) --------ATHB12----------->GT1 <-----------GT1<-----------GT1   <---------ANAC46 <---------MYB59 ----   aatcacgtgaaacgtaaaggtaaaacatatttgtaactaaaccatatttttctttctttctttctctcgtgtttgttttagaacctaatctgatctgaat  8163800                 <---------YAB1                                                     --------->CCA1(1)              ----------->GT1                                                       --------->RVE1(1)         ---------->DOF2                                           <---------HSFC1(1)--------->ARR14(2)    --------->ANAC58                   <---------ICU4              --------->HSFB2a(2)    --------->ANAC58                   --------->YAB1              <---------HSFB2a(2)      <--------    --------->ANAC46                  <---------ATHB12             --------->HSFC1(1)<---------ARR14(2) ----->YAB1   <---------YAB1    <-----------GT1  --------->At4g35610                <---------GLK1(1)   attaacacacaaaaagatgataaatgagaacatataacaaatcatgaaatgagatgagaacatacttctctagaaaattttctaaaatatccgaatcaat  8163900                                                                         <---------YAB1                                                                       --------->YAB1     --------->ANAC46                                                                --------->AHL20(2)  <---------YAB1       --------->MYB46(3)                                   <------ZmHOX2a(1)    <---------YAB1   <---------ANAC46                                       <---------TOE1(3)     <---------GLK1(2)   <---------ANAC58                                  --------->ANAC58  <---------ICU4 <-----------GT1   <---------ANAC58                       ----------->GT1 <---------TOE2(3)   --------->ICU4   ------ -ATHB12        ----------->GT1  ------->TEIL        --------->ANAC58--------->ARR11(3) --------->ZAT6   tgatggcgaacaactaaacagtagaatacaatatgtatattaaacagaaaatcaaacgctaaggaattaaaaatcatgaaaagattattaacacgagaga  8164000  Previous    Next  AGI:  At2g18820.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 2.7e-38 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus) Range:  from: 8158077    to: 8163181    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g18830.1    Description:  similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G15010.1); similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G15010.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN66609.1) Range:  from: 8163286    to: 8163483    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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