Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       <---------YAB1                   --------->YAB1                <-----------GT1                   <---------ICU4              --------->YAB1                   -------->ATHB1             <---------YAB1                  <---------AHL20(2)        --------->ATHB51                  --------->ICU4            <--------HAHB4                  <---------YAB1            -------->HAHB4                  --------->AHL20(1)        <---------AHL20(2)                  --------->AHL20(2)        -------->ATHB1                <---------ICU4              <---------ICU4               --------->ICU4               --------->YAB1        --------->AHL20(2)                 <---------ATHB51       <---------AHL20(1)                  --------->ICU4       --------->AHL20(1)                  <---------ATHB12                <---------AHL20(2)      --------->AHL20(2)                   <---------YAB1                 --------->AHL20(2)    --------->AHL20(2)            --------->ANAC55(2)                     <---------AHL20(2) -----TOE2(3) <---------AHL20(2)  <---------ANAC55(2)        <---------AHL20(2)           <---------TOE2(2) ------>GT1 <---------AHL20(2)    --------->ANAC46      <---------AHL20(2)<---------AHL20(1)      <--   gttaaaaaatatatataaaaattattatcccataatacgagactaattattatactatttttttttattctaacaattaattttgtttttcatatgttat  8157700                                                                      --------->AHL20(1)                                               --------->AHL20(2)<---------AHL20(2)                                             --------->AHL20(2)--------->AHL20(2)                                             <---------AHL20(2)<---------AHL20(2)                                           --------->AHL20(2)--------->AHL20(2)                                           <---------AHL20(2)<---------AHL20(2)                                         <---------AHL20(2)--------->AHL20(2)                                         --------->AHL20(2)<---------AHL20(2)                                       --------->AHL20(2)<---------AHL20(2)                                       <---------AHL20(2)--------->AHL20(2)                                     --------->AHL20(2)--------->AHL20(2)     --------->AHL20(2)                                   <---------AHL20(2)--------->AHL20(2)       <---------AHL20(2)                                 --------->AHL20(2)--------->AHL20(2) <---------AHL20(1)                                 <---------AHL20(2)<---------AHL20(2)<---------AHL20(2)                               --------->AHL20(2)--------->AHL20(2)--------->AHL20(2)                               <---------AHL20(2)<---------AHL20(2)<---------AHL20(2)            ----                     <----------DOF2 <---------AHL20(2)<---------AHL20(2) --------->AHL20(2)     ----              <-----------GT1--------->AHL20(2)<---------AHL20(2)--------->AHL20(2)              ---- -------AHL20(2) <---------CCA1(2) --------->AHL20(2)<---------AHL20(2)  <---------AHL20(2)  --------   tttttcaaagtttatatttctatctttacatatatatatatatatatatatatatatatatatatatatatatatattatttatatgtttctgtttcata  8157800                                     --------->MYB52(1)                             <------NtERF2                            ------>NtERF2                            --------->LBD16                           --------->RAP2.3(2)                           --------->RAP2.6(2)                           --------->DREB2C(2)                           --------->RAP2.3(3)                           --------->RRTF1(3)                           --------->ATERF1(2)                           --------->RRTF1(2)                           --------->DEAR3(1)                          <---------LBD16                          --------->RAP2.3(1)                          --------->ERF1                          --------->ATERF1(1)                          --------->ORA47(2)                         ------>NtERF2             ----------->RAV1(1)                         <---------ATERF1(1)    --------->ANAC46                         --------->LBD16        --------->ANAC58                        --------->ANAC46     --------->KAN4(2)                       --------->MYB46(3)   <---------HSFB2a(1)                       <---------LBD16 --------->ANAC58                    <---------ARR14(2)      -- ----->ANAC46        <xxxxxxxxxxxxxxxxsmallRNA(s)  <---------ALFIN1        --------->ARR14(2)   <---- ----->ANAC58        <---------ARR14(2)--------->ANAC46   <---------ARR11(3)         ----------->GT1 ----->ANAC58        --------->ARR14(2)--------->ANAC58   --------->ARR11(3)  --------->ANAC46 ------ ->YAB1     <-----------GT1<---------ATERF1(2)  --------->ANAC58 <---------YAB1--------->LBD16 <-----   agccaaaaactgattcactaacttatccgccggcatatcaaacggcacattcgccacataaatcttcatcatcgatatatccgaaacatgtgaatttgtt  8157900                                                                                       <---------At4g35610                                                                                       --------->At4g35610                                                                                    --------->TGA2(2)                                                                                  --------->bZIP60(1)                                                                                  <---------bZIP60(1)                                                                                  --------->bZIP60(2)                                                                                  --------->ANAC58                                                                                  --------->ANAC46                                                                                  --------->ANAC55(1)                                 <-----------HVH21                                --------->ANAC55(2)                                --------->DEAR3(1)                                <---------ANAC55(2)                                ------->GAMYB                                     <---------TGA1a                               --------->MYB46(3)                                 --------->TGA1a                         <-------TEIL                                             ==================bZIP_DOF                      --------->At4g35610                                         --------->ANAC58               --------->At4g35610                                       --------->HSFB2a(2)               --------->ZAT2  <------------AtMYB77                   --------->ARR11(3) ---------->DOF2               <---------At4g35610 --------->SPL7               --------->HSFC1(1)<---------O2           --------->ANAC46    --------------->AtSPL3           --------->HSFB2a(2)<-----------HVH21           --------->ANAC58  --------->ARR14(2)                 <---------HSFC1(1)--------->O2 --------->TOE2(3)    --------->ZAT2                     <------------MYB.PH3(1) <-----------STF1 ----->TEIL--------->ANAC58  --------->MYB52(1)          ===================================MYC_MYB -----REM1(1)  <---------ZAT2<---------ARR14(2)--------->WOX13(1)  <<<<<<<ZML2<-----------HVH21 --------->AtSPL8     <---------ZAT2 <---------ALFIN1  --------->MYB52(1)<---------HSFB2a(2) -------- ----------AtSPL8     <---------At4g35610    <---------ATHB12   <---------HSFB2a(2)<-----------TGA1   gtaccttgattccaagcagcagcgagctgcataaccgtcccacccctatcaatcttctaacggtttctagaacatctggatgtcacgtcagcaaagtagg  8158000                                                                <---------ALFIN1                                                               <------NtERF2                                                              <---------RAP2.6(3)                                                              ------>NtERF2                                    --------->ANAC58         --------->ANAC46                                    --------->ANAC58         <---------ATERF1(2)                                 --------->LBD16             >>>>>>>>>AtERF-4                                --------->RRTF1(2)           >>>>>>>>>AtERF-5                                --------->RAP2.3(2)          >>>>>>>>>AtERF-1                                --------->RAP2.6(2)          >>>>>>>>>AtERF-3                                --------->ANAC46             >>>>>>>>>AtERF-2                                --------->DEAR3(1)           --------->ATERF1(2)                                --------->RAP2.3(3)          --------->RAP2.6(2)                                --------->RRTF1(3)           --------->RAP2.3(2)                               --------->RAP2.3(1)           --------->DEAR3(1)                               --------->RRTF1(1)            --------->RAP2.3(3)                              <---------ATERF1(1)           --------->RAP2.3(1)                              ------>NtERF2                 --------->ERF1                              <------NtERF2                 --------->MYB46(3)                    ---                              --------->At4g35610          <---------ATERF1(1)                <------                              <---------At4g35610      <------NtERF2                        <--------                             --------->ANAC46         ------>NtERF2                         ---------                          <---------SPL7<----------DOF2--------->ATERF1(1)                <---------PCF2                         <---------ANAC58             <---------RAP2.3(1)              --------->ALFIN1                <---------TOE2(3)------>NtERF2       <---------RAP2.3(2)             --------->ZAT2<-                <---------TOE1(3)<------NtERF2       <---------DEAR3(1)      *TSS  <------ZmHOX2a(1)     --------->HSFB2a(2) <---------ANAC58            <---------RAP2.6(2)    <-----------HVH21-------- ->ALFIN1  --------->ATHB12 --------->SPL7          --------->RAP2.6(3)------>NtERF2--------->ALFIN1-   gcgatttcgagagtgattagggttttttcgtccgccgcaagtcttttctgccaaggcggctagccgccactgccaccatgtcgaaggaggtgggagcgac  8158100      <------MYB83      <---------DEAR3(2)      <------MYB46(1)     --------->MYB46(2)     --------->MYB111(1)     --------------->AtSPL8     <---------------AtSPL8     --------------->AtSPL3     <---------AtMYB61     <---------MYB46(3)     --------->MYB59     --------->MYB111(2)    <---------MYB55(1)                          <---------ANAC55(2)    <--------P                                  --------->ANAC58   <-------GAMYB                                --------->ANAC55(2) -------->RAV1(2)       --------->LBD16         --------->ANAC46 ---ATERF1(1)          <---------HSFB2a(2)      --------->ANAC58     <------NtERF2 -At4g35610  ------>MYB46(1)              --------->ARR11(3)       --------->RAP2.6(2) >At4g35610  ------>MYB83          <---------ARR14(2)             --------->ATERF1(1) --------LBD16         --------->HSFB2a(2)<---------ARR11(3)     <---------ATERF1(1) --->HVH21 <---------MYB111(1)     --------->ARR14(2)         <---------At4g35610              <----- -------->LBD16       <---------LBD16    --------->GLK1(1)    --------->At4g35610          --------->YAB1   ccctgggttggtaccaactcattctccagaagttcagggtccgaaatcttacgcaaacgttgttagcagtcgcccaagtcttaccaagttcaatgttgat  8158200                                                    <---------ARR14(2)                                                    --------->ARR14(2)                                              <----------DOF2                                  --------->HSFB2a(2)                                  <-----------RAV1(2)                                  <---------HSFB2a(2)                                 ----------------->AGL1                                <---------MYB46(3)                               <---------ARR14(2)  <------ZmHOX2a(1)                 <-------GAMYB                             <---------MYB46(3)  <---------TOE2(3)                  <------MYB83                          <---------MYB46(3) <---------ANAC58                       <---------DEAR3(2)                       <---------MYB46(3)   <---------MYB46(3)                      <------MYB46(1)                      <---------TOE2(3) --------->ALFIN1                  --------->GLK1(1)                      <---------YAB1    <---------AtMYB61                 <---------GLK1(1)       <--                --------->GLK1(1)----------------->AGL3   --------->ARR14(2)       <---------DREB2C(2)                <---------GLK1(1)<-----------------AGL2   <---------ARR14(2)   ------>ZmHOX2a(1) ---- ----TOE2(3)----------->GT1 <---------AtMYB61<---------ANAC58           --------->ATHB12         <---   gtttcagtagtagatgggaaatctatggttgtggttccagatgtggtgcttgaggattcagttccgctatgggatgatttcctagtcggtcgttttccaa  8158300                                                                                            ---------                               <---------ZAT6                                         <-------GAMYB                              <---------YAB1                                          --------->At5g28300                     <------ZmHOX2a(2)                                               <---------MYB46(3)       --------->LBD16<-------TEIL                                                  <---------RAP2.6(2)     --------->ANAC46--------->CCA1(2)                                              <---------ANAC46     ------>NtERF2  --------->ARR14(2)                                   ------>ZmHOX2a(2)  <--------  ------>NtERF2     <---------ARR14(2)               --------->ANAC55(2)<------ZmHOX2a(2)   -------->HAHB4 -------ARR11(3)    --------->ARR11(3)<---------------AGL15            --------->ARR14(2)  <---------YAB1 ----->ZAT2         <---------ARR11(3)--------------->AGL15            <---------ARR14(2) <---------TOE2(3) ------ZAT2         --------->AGP1   <-----------------AGL3   <---------ATHB12     <---------LBD16   gctctgccccccatattgccaagatccatgttattgttaacaaaatatggaacttaggtgataaatcaattcggatcgatgtttttgcggttaatgataa  8158400                                                                                        --------->HSFB2a(2)                                                                                        <---------HSFB2a(2)                                                                                       <-------------                                                                                 --------->YAB1                                                                                <---------YAB1                                                                         ------>ZmHOX2a(2)                                                                        --------->At4g35610                                                                        --------->GLK1(1)                         <---------At4g35610   --------->LBD16          <---------GLK1(1)                         --------->At4g35610  <---------ANAC46          <---------At4g35610  --------->WRKY18(1)   ------->TEIL      <---------GLK1(1)            --------->ARR11(3) >YAB1            <------ZmHOX2a(1)     <---------ZAT18                <---------ARR11(3) -ICU4       --------->GLK1(2)          --------->ZAT18        <---------HSFB2a(1)  ------>ZmHOX2a(2)   cacagtcaagttcagaatcaggaatgcatctgctagattaagggctctccgtagaggtatgtggaacatttgtgatctccctatgatcgtctcgaaatgg  8158500                              <---------AHL20(2)                             --------->AHL20(2)                             <---------AHL20(2)                        <------NtERF2                       ----------->GT1            <------MYB83                       --------->LBD16            <------MYB46(1)                    <---------ZAT2                <---------MYB46(3)                    --------->ZAT2                ----------->GT1                    <---------At4g35610          --------->ALFIN1                    --------->At4g35610          <---------AtMYB61                  <-----------RAV1(2)         <---------MYB46(3)                       <---------ANAC58     ------>ZmHOX2a(2)--------->RAP2.6(2)    --------->ALFIN1                          <---------ANAC46    <------ZmHOX2a(2)<---------LBD16       <-----------RAV1(1)                         <---------ANAC58 ----AGL1         ---------->CDC5      ----------------->AGL1                     <---------O2    <<<   acaccgatcgtagaagatgctcagccggaaattaaatctatgccaatgtgggtggtcataaaaaatgttccctactcaatgttcacatggcctggacttg  8158600  Previous    Next  AGI:  At2g18820.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 2.7e-38 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus) Range:  from: 8158077    to: 8163181    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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