AthaMap TU-Logo
Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
                                    <-------GAMYB
                                   <------MYB83                    --------->TOE2(3)
                                   <---------MYB46(3)              --------->TOE1(3)
<----------DOF2                    <------MYB46(1)--------->MYB52(2)
------ANAC58          <---------ANAC58     <----------DOF2----------->GT1             --------->TOE1(3)
------ANAC58          <---------ANAC58  <---------YAB1    <------MYB46(1)       ------->TEIL  <-----
--ANAC58              <---------ANAC46 --------->KAN4(2)  <------MYB83    <-------TEIL--------->TOE2(3)
--ANAC58     <---------ICU4       <---------AtMYB61<-------GAMYB   <----------DOF2 <-----------GT1
--GT1       --------->ICU4     <-----------RAV1(1)<---------MYB46(3) --------->AHL20(2)       <-----
 
cttcttttctatgtcataactacaggcttgtattgtgttggttattcttttgtttgttgttcggtttaaactttaaatacatgtatttaccttcaaactt  8156200
                                     ----------->GT1
                                     --------->LBD16           <---------AHL20(1)
                         --------->AHL20(2)                    --------->AHL20(1)
                         <---------AHL20(2)         <-----------GT1
                        --------->AHL20(2)       <---------AHL20(2)                               <-
            --------->GLK1(2)       <---------HSFB2a(2)        <---------ARR11(3)    --------->MYB52(2)
-----DOF2  <---------GLK1(2)        --------->HSFB2a(2)   --------->LBD16  <---------ANAC58       <-
----DAG2 ----------->ARR10   <---------AHL20(2) --------->AHL20(2)         <---------ANAC58 <-------
 
tttttttttggtgagattctcaaactatttaatttaagtccagaaaaacgatttatttctccccaaaatatttgtatttcttactggtttgtttgaaacc  8156300
                                                                               <---------ANAC58
                                                                               <---------ANAC58
                                                                      <---------ARR14(2)
                                                                      --------->ARR14(2)
                                                                    --------->LBD16
                                                                   <---------ANAC46
                                              ----------->RAV1(1)  <---------ANAC58  --------->ANAC58
                                           --------->ANAC58        <---------ANAC58  --------->ANAC58
      ------>NtERF2                 <---------HSFB2a(2) <---------TOE2(3)   <---------GLK1(2) ------
---------DOF2          --------->ANAC46    --------->ANAC58        <---------ANAC55(1) --------->YAB1
--------DAG2         <---------AtLEC2      --------->ANAC46       <---------LBD16 <---------ZAT18
----GT1          <----------DOF2    --------->HSFB2a(2) <---------TOE1(3) <---------YAB1   ---------
 
cctttttgaggcctcttggactttacatggcacaaacttggagaagaagcaacacgattagggttttgttccgggtcttgattcttgcactcatcaatct  8156400
                       <---------YAB1          <---------AHL20(1)
                    <---------ATHB12           --------->AHL20(1)
                  <---------GLK1(1)            <---------AHL20(2)
      --------->At4g35610                  <---------YAB1                             --------->ZAT6
   <---------MYB52(1)--------->YAB1      ----------->GT1                           --------->ANAC46
<---------ATHB12  --------->GLK1(1)------>ZmHOX2a(1)                              ------>ZmHOX2a(1)
--->YAB1    <---------ZAT2    <---------At4g35610  <-----------GT1             <---------YAB1    ---
>WOX13(1)   --------->ZAT2<---------MYB52(1)   --------->AHL20(2)           <---------YAB1  --------
 
tcaatcgtttgctcaagctggaaatcatcgttgtgctccttagattgtaattaattactcttctcgttctatctctcttattatcctcgacactagcatg  8156500
                                                                       <-----------ARR10
                                                                       --------->ARR11(3)
                                                                       <---------ARR11(3)
                                                                  <-------TEIL
                                                                  ------------>CBF
                                                               --------->ANAC58
                                                               --------->ANAC46
                                                               --------->ANAC58
                                                              --------------->AtSPL3
         --------->HSFC1(2)                                  <---------ALFIN1
     <---------MYB46(3)                                     <---------REM1(2)
  --------------------->WRI1                            --------->ANAC46               ---------->ARF1
  <---------ANAC46      ------>ZmHOX2a(1)               --------->ANAC58               ---------->ID1
------>At4g35610 ------>ZmHOX2a(1)         --------->MYB46(3)--------->REM1(1)------->GAMYB
->YAB1   <---------HSFC1(2)      ---------->DOF2        --------->ANAC58   --------->MYB52(1)-------
 
agcttcagtggatgtttctcctatttcctcatatgcaaaagctctaaccattctctccctcgctacacgtacaatatctaacgctctcttgtctccctgc  8156600
                                                          <---------AHL20(2)
                                                        <---------AHL20(2)
                                                      <---------AHL20(2)
                                                     --------->AHL20(2)
                                                     <---------AHL20(2)
                                                     <---------AHL20(1)
                                                     --------->ARR11(3)          --------->AHL20(1)
                    --------->SPL7    <-----------GT1--------->AHL20(1)          <---------ARR11(3)
            <---------DAG2   ----------->GT1         <---------ARR11(3)          <---------AHL20(1)
      <---------GLK1(1)   ---------->DOF2           --------->AHL20(2)   --------->GLK1(2)
 <------------CBF <---------SPL7 <-----------TBP <---------AHL20(2)  --------->YAB1 <---------AHL20(2)
-->AtLEC2   <----------DOF2 <---------TOE2(3)   --------->AHL20(2)  <---------ZAT6<---------AHL20(2)
 
aaaccattgaattccctttttcgaacggacaaaggtatatataactctctattaaatatatttttttgttagtgataatctctatatatttttgtattag  8156700
                                             <---------AHL20(2)
                                             --------->AHL20(2)
                                             <---------AHL20(1)
                                          <---------AHL20(1)
                                          --------->AHL20(1)                                  ------
                         <----------DOF2  --------->ARR11(3)                       --------->AHL20(2)
                     <---------ANAC58     <---------ARR11(3)                       --------->YAB1
                     <---------ANAC58   <---------KAN4(2)          <---------AHL20(2)         ------
                 <---------ANAC58  --------->ALFIN1                --------->AHL20(2)--------->ICU4
                 <---------ANAC58<---------ANAC46                 --------->ICU4--------->YAB1<-----
               <-----------GT1   <---------ANAC58    <---------AHL20(2)  <---------ANAC58--------->AHL20(2)
               <---------AHL20(2)<---------ANAC58    --------->AHL20(2)  <---------ANAC58<---------AHL20(2)
 
atttagataatcactaaattacttgcttcttttttagcgtgggaatattttattttttaatttttagtaattttttgtgtgactaataatatttaaattt  8156800
                                           <--------ATHB1
                                           --------->ATHB51
                                        --------->YAB1
                                       <---------AHL20(2)
                                       --------->AHL20(2)
                                      --------->AHL20(1)
                                      <---------AHL20(1)
                                      <---------AHL20(2)
                                      --------->AHL20(2)
                                   <---------ICU4
                                   <--------ATHB1
                                   <---------AHL20(2)
                                   --------->AHL20(2)                             --------->AHL20(2)
                                   --------->ATHB51    <----------DOF2            <---------AHL20(1)
                                  --------->ICU4       --------->TOE2(3)          <---------AHL20(2)
                                --------->YAB1 --------->AHL20(2)                 --------->AHL20(1)
                             --------->TOE2(3) <---------AHL20(2)      <---------YAB1             --
           <-----------TBP  <---------ZAT6 --------->AHL20(2)         <---------At5g28300   --------
--->AHL20(1)                ----------->GT1<---------AHL20(2)        <-----------GT1        <-------
--->AHL20(2)               <---------YAB1  <---------ICU4--------->AHL20(2)      --------->AHL20(2)
----AHL20(2)              <------------CBF--------->ICU4 <---------AHL20(2)      <---------AHL20(2)
 
tttgaaatatatgtttttatatgtctacttattgttaataatttaataatttaaatttctttaattttaaaattaccatggcaaataaattcaatttata  8156900
                                                                              <------ZmHOX2a(1)
                                                                            <---------TOE2(3)
                                                                      <----------DOF2
                                                                      <---------------AGL15
                                                                      --------------->AGL15
                                                                     ===============================
                                                                     <-----------------AGL3
                                                                     <-----------------AG
                                                                     <-----------------AGL1       --
                                                                     <-----------------AGL2     ----
                                                                     ----------------->AGL3     <---
 --------->MYB52(1)                                          <---------ARR11(3)                -----
------->ANAC46                         <-----------GT1    ----------->RAV1(1)----------->GT1--------
->AHL20(2)                       <---------TOE2(3)  --------->YAB1 <-----------GT1         ---------
--AHL20(2)                  <----------DOF2     <---------AHL20(2)<<<<<<<<<<GT-3b     <-------------
 
tacacaactgtttttaaaaactctaatacaacttttaagtttttacaacattttatcaaaacaacatatttttctttataaggaaacacccataaaaagt  8157000
  ------>MYB46(1)                                                                    --------->AHL20(2)
  ------>MYB83                                                                       --------->AHL20(1)
  <---------ARR14(2)                                                                 <---------AHL20(2)
<---------MYB59                                                                     --------->AHL20(2)
==MADS_MADS                                 <---------YAB1                          <---------AHL20(2)
----->TEIL                   --------->MYB52(1)                             <-----------GT1
----->ZAT18                  ----------->RAV1(1)                        --------->AHL20(2)         -
------ZAT18                --------->MYB46(3)         --------->AHL20(2)<---------AHL20(2)     -----
---->ALFIN1         --------->YAB1       --------->ICU4                <---------AHL20(2)      -----
->DAG2           --------->YAB1       <---------AHL20(2)               <---------AHL20(1)      -----
->DOF2         --------->AHL20(2)     --------->AHL20(2)               --------->AHL20(2)--------->AHL20(2)
--AGL15       --------->YAB1--------->AtMYB61         --------->YAB1   --------->AHL20(1)<---------AHL20(2)
 
ggacctatccagttccaaaataataagaaaaccaccagaaaataaatatgaaaacaataatattcaaatccaaataaaattacaaaattaaattaaatac  8157100
<- Previous    Next ->

AGI:  At2g18810.1   
Description:  DNA binding. similar to DNA binding [Arabidopsis thaliana] (TAIR:AT2G31720.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Protein of unknown function DUF313 (InterPro:IPR005508)
Range:  from: 8155021    to: 8156551    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

    printer-friendly version