Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      --------->ARR11(3)                    <---------ARR11(3)                                       <---------YAB1                    <---------ARR14(2)                                      <---------ARR11(3)   ----             <---------At4g35610                                            --------->ARR11(3)   ----            <---------YAB1<-----------GT1                      --------->ANAC58                ------ ------->TEIL--------->At4g35610   <----------DOF2             --------->ANAC58              -------- -------ATHB12      --------->ARR14(2)    <-------TEIL         --------->ANAC46             <--------   atgaatccatagttctgatgaagatttgtcactctatctttcggtacatagacattaactgatacaggccaagaacaatatcattgttccactaatcaaa  8040300                                               -------->P                                       ------->TEIL       <----------DOF2  <---------MYB52(1)              --------->CCA1(2)     <---------ZAT2 ----->ANAC58                    --------->ARR11(1)     --------->ZAT2       --------->ANAC58<------- ----->ANAC58               --------->CCA1(2)  ------>MYB83 <---------WRKY18(1)              -------- ---->DOF2                 --------->ARR11(3)  ------>MYB46(1) --------->MYB46(3)            -------- ->YAB1                    <---------ARR11(3) ----------->RAV1(1)            --------->ANAC58<------- -ATHB12                <------ZmHOX2a(1)  -------->P<-------TEIL          ---------->DOF2---------->DOF2   agccattagctattgaagaaacttaaggagatatagatatgaacttaccaacaggtccagcttgaacgaacaattcccaaagcaattcttcagaaagctg  8040400                                                                     --------->ANAC55(2)                                                                     --------->ANAC58                                                                     --------->ANAC58                                                              <--------HAHB4                                                              --------->YAB1                                                              <---------ICU4                                                              --------->ATHB12                               ------>MYB83 <---------At4g35610      --------->ANAC46      --------->TOE1(3)                               ------>MYB46(1)           --------->LBD16         ----------->GT1 <-------TEIL                --------->MYB46(3)      --------->ARR14(2)         ----------->GT1 --ZAT2            <---------ATHB12         --------->At4g35610    <-----------GT1        ----------- ->At4g35610   <---------AHL20(2)------->GAMYB       --------->GLK1(2)     --------->TOE1(3) ->ZAT2  <------ZmHOX2a(1)<-----------GT1<------ZmHOX2a(1)  --------->GLK1(2) ---------->DOF2 --At4g35610   --------->AHL20(2)----------->HVH21   <---------ARR14(2)    --------->TOE2(3)   agattcaaacaggaaatttaaatcaatttcaccaactcacagaggaagatgagaaaatccagaatcatttcacgaaacctaaaagttaaaaaacctgagc  8040500                    --------->ALFIN1        --------->DEAR3(1)                    <-----------RAV1(1)        --------->DREB2C(2)                   <---------ZAT6        --------->DEAR4(1)                    --------->ALFIN1        --------->At1g77200                 <---------ANAC46        ----------->HVH21                 --------->ZAT14        ------->GAMYB  <---------RAP2.6(2)<---------ZAT14       --------->DEAR3(2)          ------>ZmHOX2a(1)                   <---------ALFIN1       --------->MYB46(3)<------NtERF2---------->CDC5 <------NtERF2  ----------->RAV1(1)     --------->AtMYB61 <---------ANAC46 --------->At4g35610          =================RAV    --------->MYB46(3) <---------ANAC58 <---------At4g35610     --------->At4g35610     <XXXXXXXXXXXX    <---------ABI4(2)  <---------ANAC58 <---------LBD16   ----------->ARR10  <------ZmHOX2a(1) >RAV1(2)  <---------ANAC46    --------->ARR14(2)     <---------HSFB2a(2) <-----------RAV1(2)      <-   atcgagaccaccgacgtaaacagtggcgtcttggttcctctcagcggagtgttggccgagaagattagctccaacaccaggagcgattcgagtcgtcatt  8040600                                     <------NtERF2                                    ------>NtERF2                                   --------->DEAR3(1)                <-----------HVH21                                   <---------DEAR3(1)                <-----------TGA1          <<<<<<<<<TBF1           --------->ATERF1(1)       <-----------GT1       <<<<<<<<<TBF1             <---------ATERF1(1)     <---------ARR11(3)                     <XXXX    <<<<<<<<<TBF1         <---------MYB52(1)             <---------GLK1(2)               <---------HSFC1(1) <<<<<<<<<TBF1          <---------ANAC58         --------->GLK1(1)  <---------ANAC58     <---------HSFB2a(2) XXXXXXXXMIR3933        <---------ANAC58         <---------GLK1(1)  <---------ANAC58     --------->HSFB2a(2) -----------------------ANAC81   <-----------HVH21       --------->ARR11(3)              --------->HSFC1(1)   ttcttcttcttcttcttctccttgtttcgttactccgtcgccgattaagagaaatctgagattttcaatttcgtcacttctggcgatttttctagaagtt  8040700                                        <---------RAP2.6(3)             ---------->DOF2            ------>NtERF2       --------->At5g28300             <---------ANAC58                                      <-------      ----------->GT1                  <---------ANAC46                                  <---------CCA1(1)    <---------ORA47(1)                 <---------ANAC58                                  <---------RVE1(1)    --------->SPL7                    --------->ATERF1(1)                             <---------YAB1   --------->MYB52(1)                 <------NtERF2                          <---------CCA1(2)  <---------SPL7                     <---------ZAT18                 --------->ARR11(3) --------->ARR11(3)  ----------->HVH21 ----------->GT1  ------>NtERF2                   <---------ARR11(3) <---------ARR11(3) *TSS<---------DEAR3(1)             <---------PCF2               ---------->DOF2      <---------TOE2(3) XXXXXXXXXXXXXXXXMIR858          --------->ALFIN1       ---------->DOF2 <----------DOF2 <---------AHL20(1)   agaacggacggtgaagaaagaggggtttatttagagtggtgccgtctctaatgggcctataagcccattaagctcttttatatccattaagatatttagc  8040800                                    <--------HAHB4                                    --------->YAB1                                    <---------ICU4                             <-----------GT1                                 ----------->GT1               --------->GLK1(2)   --------->ICU4                      <---------MYB59 --------->CCA1(2)              <---------GLK1(2)    <---------ATHB12                    --------->TOE2(3)              --------->ARR11(3)  <-----------------AG                 --------->TOE1(3) ----GT1      <---------ARR11(3) --------->YAB1              --------->MYB52(1)   <-----------GT1 <--   ctatttagagtctagagattttgagttttttttactaatcattttgggaattggttttacaaataactgtaaacctaaattgttaaacgatatgaaattt  8040900                                 ---------->DOF2                           <---------LBD16                         ------>ZmHOX2a(2)                     --------->ANAC58                       <---------ARR14(2)                      --------->ANAC58                       <---------ARR11(3)           <---------MYB52(1)                       --------->ARR11(3)          <-------GAMYB------->GAMYB                     ---                   <---------At4g35610             --------->At5g28300       <---------WOX13(1) -----                   --------->At4g35610         ------------>MYB.PH3(1)     --------->ATHB12     -----           <---------ZAT14--------->ALFIN1 --------->AHL20(2)  --------->ANAC46     ---------->DOF2 ---------GT1    <-----------RAV1(2)<----------ID1----------->GT1         --------->ICU4        -----   tcacaattcagactatagttcagatgatctgggggaaaagaacaaaaaaatacggttaactttcaacgcaagcgtagtaattggctcaaagcatagacaa  8041000                                                                                                  ---                                                                                                  ---                                                                                            ------>ZmHOX2a(2)                                                                                           <------ZmHOX2a(2)                                                                        --------->ANAC58  --------->ARR14(2)                                                           --------->At4g35610            --------->AGP1                         --------->ANAC46     --------->ANAC58          --------->ANAC58  --------->ARR14(3)                         --------->ANAC58     --------->ANAC46      --------->ANAC46      <---------ARR14(3)                         --------->ANAC58     --------->ANAC58      --------->ANAC58      --------->ARR11(3) ------>AHL20(2)       <---------ALFIN1   --------->HSFB2a(2)   --------->ANAC58          <---------ARR11(3) ---->ANAC58          <---------REM1(2)   <---------HSFB2a(2)   --------->ANAC58          <---------ARR14(2) ---->ANAC58    ---------->ID1  <------ZmHOX2a(2)          <---------At4g35610          ----------->ARR10 ------>GT1 <---------MYB52(1) <---------ARR11(3)   --------->YAB1  --------->ANAC58--------->YAB1---   gtaaattgggaatcgtttgtcttctacacgctagatcacagtttccacaagccataatattagctgaagcaagcaagcacaaacaaaaataagatcttct  8041100                                            --------->ZAT6                                <----------DOF2                                        ------>ZmHOX2a(2)                        <-------TEIL                                  <---------ANAC58                            <---------At4g35610                           ====================HOX2a_HOX2a                    <---------ZAT2             <----------DOF2   <----------DOF2                                --------->ZAT2 ------>ANAC58             ------>ZmHOX2a(1)<---------ALFIN1               <---------At4g35610 ------>ANAC58     --------->ANAC46   <---------ARR11(3)                   --------->At4g35610 ------>ANAC46   <-----------GT1  <---------ANAC58        <---------HSFB2a(2) --------->At4g35610   aagcaacttcttgagctttatacatcatcctctctttcttgatctaacacttctctagtttgagaagaagatgaaacagcagctgcattaccctttgaat  8041200  Previous    Next  AGI:  At2g18510.1    Description:  EMB2444 (EMBRYO DEFECTIVE 2444); RNA binding. similar to PAB8 (POLY(A) BINDING PROTEIN 8), RNA binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G49760.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22876.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 8038264    to: 8040701    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g18520.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G36680.1); similar to unknown [Solanum melongena] (GB:ABU45173.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 8040964    to: 8042445    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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