Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      --------->ALFIN1                                                                                    <---------AtMYB61                                                                                    --------->MYB111(2)                                                                                  <-------GAMYB                                                                                 <---------ANAC46                                                                                 <------MYB83                                                                                 <------MYB46(1)                                                                                <------MYB46(1)                                                                                <------MYB83                                                                              <--------P      <------                                                                              <---------MYB52(1)                                                                             <-------GAMYB  <------MYB46(1)                                                                            <---------MYB46(3)<------                                                                            <---------DEAR3(2)<------                                                                           <---------DEAR3(1) <------                                                                         ------>NtERF2      <------MYB83                                                                        --------->DEAR3(1) <---------DEAR3(1)                                                                        ------->GAMYB<------MYB46(1)                                                                       --------->MYB46(3) --------->ALFIN1                                                                       --------->DEAR3(2) <--------P                                                                      <---------ATERF1(1)<-------GAMYB                                                                   --------->At4g35610  --------->MYB55(2)           ----------->RAV1(2)                                     <---------At4g35610  <---------MYB46(3)         ------>MYB83                                              ------>NtERF2<---------MYB46(3)         ------>MYB46(1)              <---------YAB1              --------->RAP2.6(2)<------MYB83       --------->AtMYB61           <---------YAB1               <---------At4g35610<--------P<------NtERF2       <---------MYB59 ---------->DOF2<---------WOX13(1)        ------>NtERF2<---------MYB52(1) <----   ctactgaaaccaaacctgatgagtctaaagtagcatgttgattaatgtctctatacttcccaactctgccgctaccgccggttgggttggaggttggcgt  7884400                                                      <-------MYC3                                                      ------->MYC2                                                      ------->PIF5                                                      <-------PIF5                                                     <---------TGA1a                                                     ===============================MYC_MYB                                                     --------->TGA1a                                                     ==============================MYC_MYB                                                     --------->O2                                                     <---------O2                                                     <---------bZIP60(2)                                                     <---------ANAC46                                                  ------>ZmHOX2a(1)                                                  ----------->HVH21                                           <-------MYC2                                           ------->MYC4                                           ------->PIF4                                           <-------MYC4                                           ------->MYC2                                           <-------PIF5                                           <-------PIF4                                           ------->PIF5                                           <-------MYC3                   --------->ANAC46        ------->MYC3                 --------->MYB52(1)       =========================================MYC_MYB               <-----------HVH21          ==========================================MYC_MYB        <---------ZAT2                    --------->O2<-------MYC2        --------->ZAT2<---------ANAC58    <---------TGA1a        <---------At4g35610               --------->TGA1a <---------ANAC46        --------->At4g35610               =====================bZIP_bZIP        ----------->RAV1(2)             <------------OsbHLH66----------------------->TaNAC69(2)       <-----------RAV1(1)             ==================HOX2a_HOX2a<---------ZAT18     <---------At4g35610<-------GAMYB  ------>ZmHOX2a(2) <---------ANAC58     --------->At4g35610============================MYC_MYB  ----------->HVH21    ================RAV ============================MYC_MYB--------->ALFIN1    <-----------RAV1(1)<---------MYB46(3) <---------O2------->MYC3  <---------ZAT14  <---------ZAT2----------->HVH21     <-----------------PIF3(1)    --------->ALFIN1  --------->At4g35610 <---------ANAC46===================HOX2a_HOX2a--------->ZAT14                 -  <---------At4g35610 <---------ANAC58<----------------PIF3(2)<---------PCF2                       -- ---ANAC58    --------->At4g35610     <------ZmHOX2a(2)  <---------ANAC58                        ---- ---ANAC46    <---------At4g35610    --------->ARR14(2) <---------DEAR3(1)  <---------MYB52(1)   ---- ---RAP2.6(2) ------>NtERF2          <---------TCP20------------>OsbHLH66   <<<<<<<<<MYB98       <--- ---ANAC58 <---------At4g35610       <---------ARR14(2)--------->ALFIN1------------>MYB.PH3(1)  <---- --NtERF2  ------>NtERF2--------->ALFIN1<---------ALFIN1<---------MYB46(3) <-------GAMYB    <--------   ctgtagctgctgctgccgctcacggcgtttggcaatggggatccacgtgctcctcacgtgggtgggacagtggagtccgttactcttgcagcaagttcta  7884500                                                                           <-----------HVH21                                                                         --------->ALFIN1                                                                       <---------ANAC58                                                                       <---------ANAC46                                                                       <---------ANAC55(2)            <---------ALFIN1                                           <---------bZIP60(2)           --------->ZAT18                                             <---------ANAC55(1)           <---------ZAT18                                             --------->ANAC55(2)        <---------ANAC46                                               <---------ANAC58        <---------ANAC58                                               <---------bZIP60(1)        <---------ANAC58                                               <---------O2     ------->PIF5                                                      --------->O2     <-------PIF5                                                      --------->bZIP60(1)   ------------>OsbHLH66                                              ----------->STF1  <------------OsbHLH66                                              <---------TGA2(2)         ------ ------>NtERF2                                                 ------>ZmHOX2a(2)              <------ --------->ABI4(1)       <---------ANAC58                     <------ZmHOX2a(2)              -------- -------->DEAR3(1)       <---------ANAC58                    <---------ARR11(3)              <------- ------->ANAC46     <---------ANAC58                         --------->ARR11(3)              <------- ----->REM1(1)      <---------ANAC58                         --------->ARR14(3)         <---------TGA1a ----->ANAC46    <----------DOF2    <---------ALFIN1  --------->TOE2(3)<---------TGA1a  <---------O2 ------ALFIN1------->TEIL<---------ANAC46      <---------At4g35610  ----------->HVH21   --------->TGA1a -----ZAT14--------->ZAT14  <------MYB46(1)    --------->At4g35610  ----------->TGA1    --------->O2< -ARR11(3) <---------ZAT14  <------MYB83  ----------->HVH21 <---------GLK1(1)  <---------CCA1(2)-----   caccgcccgtgcgtgcaccctttcttggcttggtttccacactcttgacagcttatcgttagagatctcgatgacgtggtcatatcacagacgtcgatct  7884600                                                                                    --------->ANAC58                                                                                    --------->ANAC58                                                                                  ------>MYB46(1)                                                                                  ------>MYB83                                --------->ARR14(2)                              <---------MYB59     --------->CCA1(2)          <---------ARR11(3)                              --------->MYB46(3)    --------->ARR14(2)          <---------ARR14(2)                   <---------ANAC58    <---------ARR14(2)         <---------CCA1(2)                     <---------ANAC46  --------->LBD16          ------>NtERF2                --------->MYB59--------->ALFIN1 >ZmHOX2a(2)            --------->ZAT2         <---------ANAC58      <---------ANAC58 ---At4g35610           <---------At4g35610    <---------ANAC58--------->ATHB51 <---------MYB46(2) ->ARR14(2)             <---------ZAT2 <---------MYB46(3)     <---------YAB1    <---------MYB111(1) --AGP1                 --------->At4g35610    <---------ANAC46--------->ATHB12 --------->AtMYB61 --ARR14(2)           <---------RAP2.6(2) <-----------RAV1(1) --------->ICU4 <-----------GT1 ---------LBD16  <---------ANAC58     <---------WOX13(1)<---------TOE2(3) --------------->AtSPL8 ------>HVH21    <---------ANAC58  <---------YAB1       <---------TOE2(2) <---------------AtSPL3   gacccggatatagatcgaggcttggctgctgccatatctgattgttgtggctcgtacttaggttattattggtgtgtttgtaccaaacccaatttgtgtt  7884700                                       --------->ANAC58                                 ------>ZmHOX2a(1)                               ------>ZmHOX2a(2)                             <---------ARR14(2)    <---------WOX13(1)       --------->ARR11(3)                            --------->TOE1(3)   <---------ANAC58          <---------ARR11(3)                            --------->TOE2(3)      ---   <---------ANAC58   <---------ANAC58 --------->ANAC58                   --------->ZAT6       <-----  --------->ATHB12    <---------ANAC58 --------->ANAC46              --------->HSFB2a(2)  ----------- <---------YAB1 <---------MYB52(1)<-----------HVH21               ------>ZmHOX2a(1)      <-----------GT1   ttgttgattgtcttcttcgttgtttcttgatgatcctgtcccagccatttcaaaattcgacatagctccttctctaaccctaatcttgaatttacaatat  7884800                                                           <---------ANAC58                                                           <---------ANAC58                                                           <---------ANAC46                                                     <------NtERF2                                                    --------->RAP2.6(2)                                                  ------>NtERF2     --------->AHL20(2)                           --------->ATERF1(1)                              <-     <---------AHL20(2)                          <---------SPL7                          <-----------HVH21    <---------AHL20(2)                           --------->LBD16                        --------->LBD16    --------->AHL20(2)                           ------>NtERF2                  ------>MYB83      <-- --------->AHL20(2)                              <---------ATERF1(1)            ------>MYB46(1)   <-- --------->ATHB51                              <---------LBD16   <---------AHL20(2)   <---------LBD16 ------>TOE2(3)    <---------At5g28300  --------->YAB1   --------->WRKY38(1)  <---------MYB59     <-- ----ARR11(3)     <-----------GT1      <---------YAB1------>NtERF2  <----------DOF2------>ZmHOX2a(1) ->CBF        ------>ZmHOX2a(1)     <----------DOF2<---------DEAR3(1)      <---------ZAT18    <------   ccataatttaaaaatcctagttaccatcaagtcttgagcttttgataactccggccgcgttgcctattttcttttagtgaccttcctctccggtcatatt  7884900           <---------ANAC58           <---------ANAC58       <------------CBF      --------->ATHB12     <---------YAB1   <----------DOF2                                                                                 -- --------ZAT18                        <----------ID1                                         -------- -------ANAC46                    ---------->DOF2                               <----------DOF2<----- -------ANAC58            <---------AtMYB61  ----------->GT1                  --------->At4g35610  -- -------ANAC58       <---------MYB46(3)   <XXXXXXXXXXXXXXXXXXXXXMIR831        <---------At4g35610---- ------CBF <---------AtLEC2  ----------->HVH21                     <----------DOF2      ------------>CBF   gtgtgctttcattgcatgactagttgttgtggtgacaaaagcgagaagagtaagaagagagagagagagctttagatgtgagctttgtgaatcaatagtg  7885000                                                            --------------->AtSPL8                                                       <---------MYB52(1) ------->ANAC58                                        <----------DOF2 ->YAB1                                            ---------->ID1                          <--------- ----ZAT6                --------->MYB52(2)       <-----------GT1                   <---------------- ------->ANAC58        <---------MYB52(1)    --------->HSFB2a(1)                 <---------CCA1(2) ------>DOF2   --------->ARR14(2)            <---------HSFB2a(1)              <-----------GT1      <-   aaagcaaaatgcctctggttcttctgttcgtttgactctcacgaagaacgtttctccctttgtctatacctcttctatattttctatcttcttctttatc  7885100                                                                     --------->ANAC55(2)                                                                     --------->ANAC58                                                                     --------->ANAC58                                                                     --------->ANAC46                                                                 --------->ALFIN1                                                                ------->MYC2                                                                <-------MYC4                                                                <-------MYC3                                                                ------->MYC3                                                                <-------MYC2                                                                <-------PIF5                                                                ------->PIF5                                                                ------->MYC4                                                               --------->O2                                                               <---------ANAC55(2)                                                               <---------ANAC46                                                               <---------O2      ----------->GT1                                                               <---------TGA1a   --------->LBD16                      --------->ZAT6                      ----------->HVH21  <---------WRKY18(1) -DOF2    --------->ZAT6  --------->ZAT14               <---------ANAC58    --------->WRKY12 --------ANAC81       <---------ICU4                    <---------ANAC58    ----------->HVH21    <--- ---------DOF2    <-------TEIL           <---------At4g35610   --------->TGA1a <---------LBD16   <---   tctttttctctaactctatgttcatcactactcactagtactcatctcatggactatagcttgacacgtggacgtaatttgaccggaaaaatcgctatgg  7885200                                                                --------->AHL20(2)                                                                <---------AHL20(2)                                                               --------->AHL20(2)                                                               <---------AHL20(1)                                                               --------->AHL20(1) <---------ANAC58                                              <---------AHL20(2) <---------ANAC58                                 ----------->GT1             ---------->DOF2 ------ANAC58       <------ZmHOX2a(1)            <---------TOE2(3)       ---------->DOF2           <- ------ANAC58      <---------YAB1                <---------TOE1(3)   <---------TOE2(3)----------->GT1   gttgtgtcccaatgtaatattaggatagcaatcgcataatggtttttagttaaggtaatttgcaatttaataagataaagaaaagagaccgtataaattt  7885300  Previous    Next  AGI:  At2g18120.1    Description:  SRS4 (SHI-RELATED SEQUENCE 4). similar to STY2 (STYLISH 2) [Arabidopsis thaliana] (TAIR:AT4G36260.1); similar to hypothetical protein [Thellungiella halophila] (GB:ABB45842.1); contains InterPro domain Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511); contains InterPro domain Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510); contains InterPro domain Protein of unknown function DUF702 (InterPro:IPR007818) Range:  from: 7883697    to: 7884763    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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