Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  <---------ICU4               <---------AHL20(1)               <---------ARR11(3)                                    <---------AHL20(2)       <---------MYB52(2)                                            --------->AHL20(2)  --------->ANAC46 <-----------GT1    --------->ANAC58    <---------ANAC55(2)     <---------ANAC58 --------->HSFB2a(2)                  --------->ANAC58    --------->ANAC55(2)     <---------ANAC58 <---------HSFB2a(2)  --------->TOE2(3)               <---------ANAC58 <---------TOE2(3) ------>P      --------->AHL20(1)   ---------->DOF2   <---------ANAC58---------->DOF2 -->WOX13(1)   --------->AHL20(2) --------->ANAC46   <---------At4g35610     <---------ICU4 -ATHB12   --------->YAB1--------->YAB1         <----------DOF2 --------->YAB1  <---------AHL20(2)   ctaccagaaacaaacaaaatattacattagtaatacccacaagctcaaaacttttagcttatgtaatcaaattaaagaaaaattacttggtgaagaacga  7622700                                         --------->ZAT2                          <------ZmHOX2a(1)                   --------->TOE2(3)     <---------At4g35610                     --------->ARR14(2)                  <---------YAB1 --------->MYB52(1)                              <---------ARR14(2) <         --------->MYB46(3) <----------ID1         --------->YAB1          <---------ALFIN1    <----- <------MYB46(1) <---------ARR11(3)      <---------ZAT2                --------->At4g35610  <-------- <------MYB83    --------->ARR11(3)      --------->At4g35610        ---------->DOF2  <-----------HVH21   cgttggtatcaacaacgattatcttagaggaagacaaacgagcagctgaagaatcacaagacttgcaagagaaagctccacagtatatgtcatctcgtag  7622800                          ---------->DOF2        ------->GAMYB           <---------ANAC58                     <---------MYB52(2) -----------GT1  <-----------HVH21        <---------YAB1                   >>>>>>>>>TBF1 ----TOE2(2)    <-----------RAV1(1)---------->DOF2           <---------LBD16  >>>>>>>>>TBF1 -ANAC46   <---------ANAC58   ----------->GT1 --------->MYB52(1)        >>>>>>>>>TBF1   ataaacctctcttacttgctgtcgcagacaaagagttaaaagttacaataacgaacaaaaaaactcggaaggaagaagaagaagaagcatagagagattg  7622900               --------->HSFB2a(1)                                       <---------ANAC46               <---------HSFB2a(1)                                   <---------ANAC58               <---------HSFC1(2)                                    <---------ANAC58               --------->HSFC1(2)                         --------->ARR11(3)      <---------DAG2-----             <---------GLK1(2)    <---------YAB1          <---------ARR11(3)      <----------DOF2       <----------DOF2  ------>ZmHOX2a(1)                --------->REM1(1)<---------HSFB2a(2)  <-----      <---------DAG2 ------>ZmHOX2a(1)                 ----------->RAV1(1)--------->HSFB2a(2) <------   aagagaaaccttttggattcttcctcctctggttttcttattgaaaactttgctctgcaacatcttcaatttcttgctggaaaacttttcgatttcgccg  7623000                                                                         --------->MYB46(3)                                                                       --------->ANAC58                                                                   --------->ANAC46                                                                   --------->ANAC58                      --------->ANAC58                          --------->TOE1(2)       <---------GLK1(1)                                        --------->TOE2(2)      <---------ARR11(3)                                        --------->TOE2(3)      --------->ARR11(3)                             --------->AHL20(2)--------->ANAC58 ---->LBD16           --------->ANAC58       ---------->DOF2    --------->TOE1(3) ----DEAR3(1)       --------->MYB52(1)  <----------DOF2    <---------AHL20(2)     *TSS        ------- ---LBD16      <-----------HVH21<------ZmHOX2a(1)  <----------DOF2 --------->ANAC58          <-------   gtgaagaagatttcagtcgtcagaacggaagagaggaagaagctttttaaagcctttaaatttaaacctaagccagccaacttgactactaaaattttca  7623100                                         <-------GAMYB                                         --------->At5g28300                                        ----------->GT1                                        <---------MYB46(3)                                       <---------ANAC46                                     ------------>AtMYB77                                    ----------->HVH21                                    ----------->TGA1                            --------->ANAC46                           <---------TOE1(3)                         ----------->HVH21                          <---------DOF5.7(2)                <----------DOF2       <---------YAB1                          --------->MYB52(1)              <-----------GT1------->GAMYB ----->CBF              --------->DOF5.7(2)            ----------->GT1  --------->DEAR3(2) ----GT1  ------>ZmHOX2a(1)<---------TOE2(3)  <-----------GT1<---------DAG2  ------------>CBF   attctatagctccttattcgttcatggttaacgaaacgatgacggttaaaaccggtttagttactttttctctaaccggctcaatctgattaaaccgaag  7623200                                                                                                 ----                                                                                    <---------------AGL15                                                                                    --------------->AGL15                                                                                   ----------------->AG                                                                                   ----------------->AGL3                                               <----------ID1                      --------->MYB46(3)                                 <---------------AGL15                            -------->P <-------                                 --------------->AGL15                           --------->MYB52(1)                                 ===================================================================MADS_MADS                              <-----------GT1  ----------->GT1         <-----------GT1  <---------ICU4                   --------->ZAT14           --------->DAG2          <---------AHL20(2)<---------DAG2                   <---------ZAT18          ---------->DOF2      <---------AHL20(2)==================             <---------At4g35610<---------YAB1--------->DAG2 <----------DOF2   <---------MYB52(2)<---   taaacacagcaatacagctagtaaactcggtattactcttgatggaaaaaggtcaaaaacactctttttattttaaccaaaactaaccaatttttgcaag  7623300                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                         <---------At4g35610                                                         --------->At4g35610                        x                                                        ------->TEIL                                <                                                  <---------ATHB12                                 xx                                                  --------->ICU4                           --------->WOX13(1)                         --------------------->WRI1-------->HAHB4                         <---------AHL20(2)                 <------ZmHOX2a(2)               <---------TOE2(3)                        --------->AHL20(2)           --------->TOE1(2)                  <---------AHL20(2)                         <---------AHL20(2)           --------->TOE2(3)   ------>ZmHOX2a(2)--------->YAB1                           --------->AHL20(2)      <---------ANAC58   --------->TOE2(3) <---------AHL20(2)               --------------->AGL15  xx      <---------ANAC58 <---------At5g28300 --------->AHL20(2)               <---------------AGL15<--- ----->ARR11(3) <---------ARR11(3)        --------->AHL20(2)    <---------ATHB51   ----------->GT1 xx --AtLEC2  --------->TOE2(2) <---------ARR11(3)<---------AHL20(2)--------->YAB1   --------->HSFB2a(2) ===========================================================================================MADS_MADS ------ARR11(3) --------->ARR11(3)        <---------AHL20(2)    <---------ATHB12  <---------HSFB2a(2)   ataatattgcatacctaagatcatttaccttgatctcatagaaatttttttaatgatgcatctccaattataccgatacaatttctagtaaataaatcag  7623400                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                              --------->ANAC58                              --------->ANAC58                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            <------ZmHOX2a(1)                            xxxxxxxxxxxxxxxx>smallRNA(i)                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                         --------->HSFB2a(2)                     <---------ANAC46                   <---------ATERF1(1)                   <xxxxxxxxxxxxxxxxsmallRNA(i)                  <xxxxxxxxxxxxxxxxsmallRNA(i)             <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             <---------ARR14(2)------>NtERF2             --------->ARR14(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         --------->ALFIN1<---------HSFB2a(2)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->DAG2<------NtERF2 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     ---------->DOF2--------->ATERF1(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                          <----------DOF2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <----------DOF2  <---------DAG2 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    --------->ANAC58      <-----------GT1 xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->ANAC58  <---------MYB52(1) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                          - ------ZAT6 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <-----------GT1                  --------->WOX13(1) xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->GLK1(2)       ---   tgttcaataaagtgggataggcgtcgtctaggacgcctaggcactaaacgcttttataccgttttgactttttcaaaatcggttctattaatcagtgaga  7623500                                                  <<<<<<<<<MYB98<------ZmHOX2a(2)                                                 <-------GAMYB <-----------ARR10                                                <------MYB83   <---------AGP1                                                <------MYB46(1)--------->ARR14(2)                                               <---------MYB46(3)<xxxxxxxxxxxxxxxxsmallRNA(s)                                              --------->ALFIN1 <---------ARR14(2)                                            <------MYB46(1)    <---------ARR11(3)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         <---------At4g35610<---------ANAC46  <---------ARR14(1)                         <---------LBD16    <------MYB83   <---------LBD16                      ---------->DOF2      --------->MYB111(1)<---------CCA1(2)  <---------AHL20(1)                    --------->TOE2(3)      --------->MYB46(2) <------NtERF2      --------->AHL20(1) -------->ARR11(1) <---------ICU4     <---------YAB1--------->MYB59     <---------CCA1(2)           - -------->ARR10   --------->ICU4     xxxxxxxxxxxxxxxx>smallRNA(s)------>ZmHOX2a(2)         <---------ICU4   tagatttggcagactatgtaaacattaagcggattagactctcattaggtgggttaggctaggcggatctaatcgtctcttaatattttttaaaaatttc  7623600  Previous    Next  AGI:  At2g17510.1    Description:  EMB2763 (EMBRYO DEFECTIVE 2763); RNA binding / ribonuclease. similar to ribonuclease II family protein [Arabidopsis thaliana] (TAIR:AT1G77680.1); similar to hypothetical protein OsI_009610 [Oryza sativa (indica cultivar-group)] (GB:EAY88377.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71704.1); similar to unnamed protein product [Oryza sativa (japonica cultivar-group)] (GB:BAA85401.1); contains InterPro domain Nucleotide binding protein, PINc (InterPro:IPR006596); contains InterPro domain Ribonuclease II and R; (InterPro:IPR001900) Range:  from: 7616318    to: 7623082    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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