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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                  ------>ZmHOX2a(2)
                                                 <------ZmHOX2a(2)
                                                --------->ARR11(3)
                                                <---------ARR14(2)
                                         <---------YAB1
                                       --------->YAB1                                ------>ZmHOX2a(1)
                                     ===============HOX2a_HOX2a            <---------ANAC58
    --------->ANAC58                 ------>ZmHOX2a(1)       --------->At4g35610    XXXXXXXXXXXXXXXX
    --------->ANAC58      <---------At4g35610   --------->ARR14(2)         <---------ANAC58
------->ANAC58            <---------CCA1(2)  ------>ZmHOX2a(2) <-----------HVH21<---------At4g35610
------->ANAC58           ------->TEIL===================HOX2a_HOX2a    <---------ANAC58            -
-----REM1(2)     <-----------GT1     ====================HOX2a_HOX2a   <---------ANAC58           --
 
cacgctcacgctcttctatataactctgcatctctctctccttcatgatccgatcttgtatatcagcgtcaagtgcttgcttaagctcctccacaaactt  7553200
          --------->AHL20(2)
          <---------AHL20(2)
         <---------AHL20(1)
         --------->AHL20(2)                                            ------>ZmHOX2a(1)
         <---------AHL20(2)        --------->ANAC58                ------>ZmHOX2a(1)
  --------->AtMYB61                --------->ANAC58       <-----------ARR10                ---------
 --------->MYB46(3)  ----------->RAV1(1)                  --------->ARR11(3)         --------->At4g35610
XXXX>MIR865-3P      ----------->HVH21                     <---------ARR11(3)--------->ANAC46
-------->ANAC46    --------->At4g35610                   <---------GLK1(2)--------->ZAT6 <---------ALFIN1
------->MYB46(3)   <---------At4g35610       <-----------GT1    ------>ZmHOX2a(1)--------->ANAC46
 
atccaccactaatttaattctcagcgacatcgtcttcgaagcaaattctaactatatacaaaatctcctccttcctcacactaaacgctgctacacataa  7553300
                                              <----------DOF2
                                          <------NtERF2
                                          --------->DEAR4(2)
                                          --------->ATERF1(1)
                                          --------->RAP2.3(1)
                                         <---------DEAR4(2)
                                         <---------ERF1
                                         <---------RAP2.3(1)
                                         ------>NtERF2
                                         <---------ORA47(2)
                                         <---------RRTF1(1)
                                         <---------ATERF1(1)
                                         <---------RAP2.6(1)
                                        <---------RRTF1(3)
                                        <---------RAP2.3(3)
                                        <---------RRTF1(2)
                                        <---------RAP2.3(2)        --------->ARR11(3)
                                       <---------ABI4(1)<------NtERF2
                                       --------->ATERF1(1)         <---------ARR14(2)
                                      <---------RAP2.3(1)          <---------ARR11(3)
                                    --------->SPL7  --------->MYB52(1)                             <
                                    <---------At5g28300------>NtERF2  <----------DOF2   <---------ANAC55(1)
                                   --------->MYB52(1) <---------DEAR3(1)                --------->ANAC55(2)
                                 <---------ANAC58  ----------->HVH21 ------>ZmHOX2a(2)  <---------ANAC55(2)
                                 <---------ANAC58 --------->DEAR3(2)<------ZmHOX2a(2)   <---------ANAC46
                          <---------MYB52(1)  <---------DAG2       --------->ARR14(2)   <---------ANAC58
                        <---------ANAC58<---------DEAR3(1)    --------->GLK1(2)         <---------ANAC58
          ------>ZmHOX2a(1) <----------DOF2 ------>NtERF2     <---------ARR14(2)    <---------ANAC58
>ANAC46------>ZmHOX2a(1)<---------ANAC58--------->DEAR3(1)   <---------GLK1(2)      <---------ANAC58
 
atacaatctcctccttcttctggttttccgtcttttacttacggcggcgctttaccgacggcgagattccgatcttttctcgttgaagcttgcgtgagaa  7553400
                                                                                            <-------
                                                                                 ---------->DOF2
                                  ---------->ID1                            --------->AHL20(2)
                             <----------DOF2           *TSS                --------->AHL20(2)
         <----------ID1     <---------DAG2     <----------DOF2             <---------AHL20(2) <-----
     ---------->DOF2    --------->ANAC58     <---------At4g35610    ----------->GT1    ------>NtERF2
 <------ZmHOX2a(1)      --------->ANAC46  <-----------GT1          ----------->GT1    <---------ZAT18
---------TOE2(3)        --------->ANAC58 <-----------GT1          --------->ALFIN1    --------->ZAT18
 
ctgaggaagaaagggacagagacattcacgaccttttgtttttttttccgctttctaatcttcttcagagtgggaaaaataaataaaagcgggctcttat  7553500
                                          <------NtERF2
                                          <---------At4g35610
                                        <-----------RAV1(2)
                                     ----------->HVH21
                                   <-----------RAV1(1)
                                   =================RAV
                                   --------->ALFIN1
                                  ------->MYC3
                                  ------->MYC2
                                  <-------MYC4
                                  <-------MYC2
                                  ------->MYC4
                                  <-------MYC3
                                 --------->TGA1a
                                 --------->O2 <---------GLK1(2)
                                 <---------TGA1a
                                 <---------O2 <---------ARR14(2)
                                 --------->ANAC55(2)           ----------->GT1
                                 =========================bZIP_DOF
                           <-----------HVH21  --------->ARR14(2)
                          --------->ANAC46--------->At4g35610------->MYC3
     <------------CBF --------->YAB1 --------->ALFIN1        <-------MYC3
--YAB1          ------->TEIL     <---------ANAC55(2)         *TSS      --------->TOE2(3)
-------CBF    <---------ZAT14  <---------ALFIN1<----------DOF2----------->GT1        <----------DOF2
 
tgggcctatattgggcctgtacttaacataagtcacacgtgtggcagcggatttttggattacacatgttaaaaacttaaaattagggctttgtgtttcg  7553600
                                               <------NtERF2
                                              --------->LBD16
                                             <------NtERF2
                                             <---------ANAC46
                                            --------->At4g35610
                                            <---------LBD16
                                 <---------ANAC46
                                 <---------ANAC58
                                 xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                    <---------AHL20(2)      --------->LBD16
                    <---------YAB1          ------>NtERF2
                  --------->CCA1(2)        --------->DEAR3(1)
                 --------->ARR11(3)  <---------ANAC58                           <-------TEIL    <---
                 <---------ARR11(3)  <---------ANAC58                     --------->YAB1    --------
   --------->HSFB2a(2)           <---------ANAC58                 --------->At4g35610       <-------
 
cttcttctcaaaccctagaagatataattgagactggcttgcttagccgcggagaactcagaactcattcgctgcaaacatggttcgtaatcttcgtctc  7553700
                             <-----------HVH21
                             <-----------TGA1
                            <---------ANAC58                                                       -
                            <---------ANAC58                                                      <-
            <---------ARR14(2)                                                                    --
         <---------ANAC55(2)<---------ANAC55(2)                                                 <---
-------DOF2 --------->ARR14(2)   --------->ANAC55(2)                                           -----
-->ID1   --------->ANAC55(2)--------->ANAC55(2)                                        --------->LBD16
--CCA1(2)<---------ANAC46   <---------ANAC46<---------AtMYB61---------->ID1          <---------LBD16
 
tttctctaagtctcgtattcacaagcgtattgcgtcatgtgtttgttttggttttggatagtttgtctccatctgtgaattcattttgtgcgggattata  7553800
                                               <---------YAB1
                                     <---------ANAC46
                                   --------->ATHB12
                                   -------->HAHB4                <---------GLK1(1)
     <----------DOF2               <---------ICU4           ----------->GT1      ----------->GT1
-------->RVE1(1)                  <---------YAB1           --------->DAG2       ------>ZmHOX2a(2)
--------ARR11(3)                  --------->ICU4   --------->ICU4--------->GLK1(1)
------->ARR11(3)               --------->AHL20(2) <---------TOE2(3)            <------ZmHOX2a(2)
------AHL20(2)         --------->GLK1(1)    --------->ICU4---------->DOF2  <---------ZAT18         <
---->AHL20(2)   --------->STY1(2) <---------ATHB51<---------TOE1(3)   <----------DOF2       <<<<<<<<
 
aaatctctctttgtaatctagatagcatttccatgtaattatgggtaattgttaatgtttataaagtgaattcctttgtgcgatctgtaaaatgggttag  7553900
                                                        <---------ANAC58                 <---------ANAC58
                ---------->DOF2                         <---------ANAC46                 <---------ANAC58
            ------>ZmHOX2a(2)                           <---------ANAC58           --------->ARR11(3)
            ===================HOX2a_HOX2a         ----------->RAV1(2)             <---------ARR11(3)
           <------ZmHOX2a(2)                      ------>MYB46(1)            =======================
           ====================HOX2a_HOX2a        ------>MYB83               <---------ANAC46
          <---------ARR11(3)            --------->CCA1(2)                    <---------TGA1a
  --------->ARR11(3)    <------ZmHOX2a(1)    <-----------GT1                 <---------ANAC58
---------WOX13(1)    --------->CCA1(2) <---------ARR14(2)                 ----------->HVH21
<MYB98    --------->ARR11(3)           --------->ARR14(2) <---------MYB52(1) <---------ANAC58
 
ggattgatattgagatctcaaaagataggactcaattagtcagatatgaaacctccctggcgttattctcttgttctgtgacttgaggtcttgagtgatg  7554000
                  --------->YAB1
             <---------At4g35610                                      --------->ANAC46
         <---------WOX13(1)                    <---------YAB1         --------->ANAC58
       --------->ATHB12                      <---------AHL20(2)       --------->ANAC58
<----------DOF2  <---------YAB1             <---------YAB1     <----------DOF2
===========bZIP_DOF                   <---------YAB1        --------->GLK1(2)
 
agacttttagtgattgagctattataaacatttattgtgttttgatttttatttttgttcgatattcttttgcaggcaagaggtttgaagaagcatttga  7554100
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AGI:  At2g17350.1   
Description:  similar to hypothetical protein [Vitis vinifera] (GB:CAN62847.1)
Range:  from: 7552620    to: 7553456    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At2g17360.1   
Description:  40S ribosomal protein S4 (RPS4A). Identical to 40S ribosomal protein S4-1 (RPS4A) [Arabidopsis Thaliana] (GB:Q93VH9;GB:Q7XJS7); similar to 40S ribosomal protein S4 (RPS4B) [Arabidopsis thaliana] (TAIR:AT5G07090.1); similar to 40S ribosomal S4 protein [Glycine max] (GB:AAM93434.1); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Ribosomal protein S4e, N-terminal and RNA-binding (InterPro:IPR013844); contains InterPro domain Ribosomal protein S4e, N-terminal (InterPro:IPR013843); contains InterPro domain Ribosomal protein S4e, central (InterPro:IPR013845); contains InterPro domain KOW (InterPro:IPR005824)
Range:  from: 7553562    to: 7555395    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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