Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 <---------GLK1(2)                                                                              --------->At4g35610                                                                              <---------At4g35610                                                                              <------NtERF2                                                                              <---------ZAT2                                                                              --------->HSFC1(2)                                                                              <---------HSFB2a(1)                                                                              --------->HSFB2a(1)                                                                          --------->ANAC46  <---------GLK1(2)                                               <---------At4g35610  --------->ARR14(2)                                              --------->ZAT2  <---------ARR14(2)                                              <---------ZAT2 -------->LBD16                                    --------->ANAC46     <---------LBD16 -------LBD16                                    --------->MYB52(1) <----------DOF2                -- -------GT1                                  ------->TEIL    <---------At4g35610                   -- --GLK1(1)                                <---------MYB52(2) --------->At4g35610          <---------At4g35610 ->GLK1(1)              --------->YAB1  --------->MYB52(1)   <---------ZAT2   <---------HSFC1(2)<---- -GLK1(2) ---------->DOF2      ----------->GT1  ----------->HVH21 --------->At4g35610   ---------->CDC5   tccggattctccaaaagccctaaaaatcaaaatttgaaaaaaaaacgaacctcacggcgagagagctcagctttccaggcagcttctcgctcagcgactt  7553100                                                   ------>ZmHOX2a(2)                                                  <------ZmHOX2a(2)                                                 --------->ARR14(2)                                                 --------->ARR11(3)                                          <---------YAB1                                        --------->YAB1                                ------>ZmHOX2a(1)                                      ------>ZmHOX2a(1)       --------->At4g35610    XXXXXXXXXXXXXXXX     --------->ANAC58                 ===================HOX2a_HOX2a        <---------ANAC58     --------->ANAC58      <---------At4g35610   <---------ARR14(2)         <---------ANAC58 ------->ANAC58            <---------CCA1(2)  ------>ZmHOX2a(2)         <---------ANAC58 ------->ANAC58           ------->TEIL====================HOX2a_HOX2a   <---------ANAC58           -- -----REM1(2)     <-----------GT1     ===============HOX2a_HOX2a<-----------HVH21<---------At4g35610-   cacgctcacgctcttctatataactctgcatctctctctccttcatgatccgatcttgtatatcagcgtcaagtgcttgcttaagctcctccacaaactt  7553200           --------->AHL20(2)           <---------AHL20(2)          <---------AHL20(2)          <---------AHL20(1)                                            ------>ZmHOX2a(1)          --------->AHL20(2)        --------->ANAC58                ------>ZmHOX2a(1)   --------->AtMYB61                --------->ANAC58       <---------ARR11(3)               ---------  --------->MYB46(3)  ----------->RAV1(1)                  --------->ARR11(3)         --------->At4g35610 XXXX>MIR865-3P      ----------->HVH21                     <-----------ARR10 --------->ANAC46 ------->MYB46(3)   --------->At4g35610                   <---------GLK1(2)--------->ZAT6 <---------ALFIN1 -------->ANAC46    <---------At4g35610       <-----------GT1    ------>ZmHOX2a(1)--------->ANAC46   atccaccactaatttaattctcagcgacatcgtcttcgaagcaaattctaactatatacaaaatctcctccttcctcacactaaacgctgctacacataa  7553300                                               <---------DAG2                                           <------NtERF2                                           --------->ATERF1(1)                                           --------->RAP2.3(1)                                           --------->DEAR4(2)                                          <---------DEAR4(2)                                          <---------RRTF1(1)                                          <---------ERF1                                          <---------RAP2.6(1)                                          ------>NtERF2                                          <---------RAP2.3(1)                                          <---------ATERF1(1)                                          <---------ORA47(2)                                         <---------DEAR3(1)                                         <---------RAP2.3(3)                                         <---------RRTF1(2)                                         <---------RRTF1(3)         <---------ARR11(3)                                        <---------ABI4(1)<------NtERF2                                        --------->ATERF1(1)         <---------ARR14(2)                                       <---------RAP2.3(1)          --------->ARR11(3)                                     <---------At5g28300------>NtERF2                               <                                     --------->SPL7  --------->MYB52(1)<----------DOF2   <---------ANAC58                                    --------->MYB52(1) <---------DEAR3(1)                <---------ANAC58                                  <---------ANAC58  ----------->HVH21 ------>ZmHOX2a(2)  <---------ANAC46                                  <---------ANAC58 --------->DEAR3(2)<------ZmHOX2a(2)   <---------ANAC55(2)                           <---------MYB52(1)  <----------DOF2      --------->ARR14(2)   <---------ANAC55(1)                         <---------ANAC58<---------RAP2.3(2)   <---------ARR14(2)        --------->ANAC55(2)           ------>ZmHOX2a(1) <----------DOF2 ------>NtERF2     --------->GLK1(2)     <---------ANAC58 >ANAC46------>ZmHOX2a(1)<---------ANAC58--------->DEAR3(1)   <---------GLK1(2)      <---------ANAC58   atacaatctcctccttcttctggttttccgtcttttacttacggcggcgctttaccgacggcgagattccgatcttttctcgttgaagcttgcgtgagaa  7553400                                                                                             <-------                                                                                  ---------->DOF2                                   ---------->ID1                            --------->AHL20(2)                              <----------DOF2           *TSS                <---------AHL20(2)          <----------ID1     <---------DAG2     <----------DOF2             --------->AHL20(2) <-----      ---------->DOF2    --------->ANAC58     <---------At4g35610    ----------->GT1    ------>NtERF2  <------ZmHOX2a(1)      --------->ANAC58  <-----------GT1          ----------->GT1    --------->ZAT18 ---------TOE2(3)        --------->ANAC46 <-----------GT1          --------->ALFIN1    <---------ZAT18   ctgaggaagaaagggacagagacattcacgaccttttgtttttttttccgctttctaatcttcttcagagtgggaaaaataaataaaagcgggctcttat  7553500                                           <------NtERF2                                           --------->At4g35610                                         <-----------RAV1(2)                                      --------->ALFIN1                                    =================RAV                                    --------->ALFIN1                                    <-----------RAV1(1)                                   ------->MYC4                                   ------->MYC2                                   <-------MYC2                                   ------->MYC3                                   <-------MYC3                                   <-------MYC4                                  =========================bZIP_DOF                                  --------->ANAC55(2)                                  <---------O2 --------->ARR14(2)                                  --------->TGA1a                                  <---------TGA1a                                  --------->O2 <---------GLK1(2)----------->GT1                            <-----------HVH21  <---------ARR14(2)                           --------->ANAC46<---------At4g35610*TSS      --------->TOE2(3)      <------------CBF --------->YAB1 ----------->HVH21       <-------MYC3 --YAB1          ------->TEIL     <---------ANAC55(2)         ------->MYC3 -------CBF    <---------ZAT14  <---------ALFIN1<----------DOF2----------->GT1        <----------DOF2   tgggcctatattgggcctgtacttaacataagtcacacgtgtggcagcggatttttggattacacatgttaaaaacttaaaattagggctttgtgtttcg  7553600                                                <------NtERF2                                               --------->LBD16                                              <------NtERF2                                              <---------ANAC46                                             --------->At4g35610                                             ------>NtERF2                                  <---------ANAC58                                  xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  <---------ANAC58                     <---------AHL20(2)      <---------LBD16                     <---------YAB1          --------->LBD16                   --------->CCA1(2)        --------->DEAR3(1)                  --------->ARR11(3)  <---------ANAC58                           <-------TEIL    <---                  <---------ARR11(3)  <---------ANAC58                     --------->YAB1    <-------    --------->HSFB2a(2)           <---------ANAC46                 --------->At4g35610       --------   cttcttctcaaaccctagaagatataattgagactggcttgcttagccgcggagaactcagaactcattcgctgcaaacatggttcgtaatcttcgtctc  7553700                              <-----------HVH21                              <-----------TGA1                             <---------ANAC58                                                       -                             <---------ANAC46                                                      --             <---------ARR14(2)                                                                    <-          <---------ANAC46   <---------ANAC55(2)                                                 <--- -------DOF2 --------->ARR14(2)   --------->ANAC55(2)                                           ----- --CCA1(2)--------->ANAC55(2)<---------ANAC58<---------AtMYB61                          --------->LBD16 -->ID1   <---------ANAC55(2)--------->ANAC55(2)              ---------->ID1          <---------LBD16   tttctctaagtctcgtattcacaagcgtattgcgtcatgtgtttgttttggttttggatagtttgtctccatctgtgaattcattttgtgcgggattata  7553800                                                <---------YAB1                                      <---------ANAC46                                    -------->HAHB4                                    --------->ATHB12              --------->GLK1(1)      <----------DOF2               <---------ICU4           ----------->GT1      ----------->GT1 -------->RVE1(1)                  <---------YAB1           --------->DAG2       ------>ZmHOX2a(2) ------->ARR11(3)                  --------->ICU4   --------->ICU4<---------GLK1(1) --------ARR11(3)               --------->AHL20(2) <---------TOE1(3)            <------ZmHOX2a(2) ------AHL20(2)         --------->GLK1(1)    --------->ICU4---------->DOF2  <---------ZAT18         < ---->AHL20(2)   --------->STY1(2) <---------ATHB51<---------TOE2(3)   <----------DOF2       <<<<<<<<   aaatctctctttgtaatctagatagcatttccatgtaattatgggtaattgttaatgtttataaagtgaattcctttgtgcgatctgtaaaatgggttag  7553900                                                         <---------ANAC58                 <---------ANAC58                 ---------->DOF2                         <---------ANAC58                 <---------ANAC58             ------>ZmHOX2a(2)                           <---------ANAC46           <---------ARR11(3)             ===================HOX2a_HOX2a         ----------->RAV1(2)             --------->ARR11(3)            <------ZmHOX2a(2)                      ------>MYB46(1)            <---------TGA1a            ====================HOX2a_HOX2a        ------>MYB83               <---------ANAC58           --------->ARR11(3)            --------->CCA1(2)                    <---------ANAC58   --------->ARR11(3)    <------ZmHOX2a(1)    <-----------GT1                 ======================= ---------WOX13(1)    --------->CCA1(2) --------->ARR14(2)                 ----------->HVH21 <MYB98    <---------ARR11(3)           <---------ARR14(2) <---------MYB52(1) <---------ANAC46   ggattgatattgagatctcaaaagataggactcaattagtcagatatgaaacctccctggcgttattctcttgttctgtgacttgaggtcttgagtgatg  7554000  Previous    Next  AGI:  At2g17350.1    Description:  similar to hypothetical protein [Vitis vinifera] (GB:CAN62847.1) Range:  from: 7552620    to: 7553456    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g17360.1    Description:  40S ribosomal protein S4 (RPS4A). Identical to 40S ribosomal protein S4-1 (RPS4A) [Arabidopsis Thaliana] (GB:Q93VH9;GB:Q7XJS7); similar to 40S ribosomal protein S4 (RPS4B) [Arabidopsis thaliana] (TAIR:AT5G07090.1); similar to 40S ribosomal S4 protein [Glycine max] (GB:AAM93434.1); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Ribosomal protein S4e, N-terminal and RNA-binding (InterPro:IPR013844); contains InterPro domain Ribosomal protein S4e, N-terminal (InterPro:IPR013843); contains InterPro domain Ribosomal protein S4e, central (InterPro:IPR013845); contains InterPro domain KOW (InterPro:IPR005824) Range:  from: 7553562    to: 7555395    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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