Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 ------                                                                                              <------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                        ----------->HVH21                                                                                       <---------MYB52(1)                                                                                       --------->At5g28300                                                                                      --------->LBD16                                                                                      <---------DEAR3(2)                                                                                     --------->ATERF1(2)                                                                                     <---------ATERF1(2)                                                                                    <------NtERF2                                                                                   <---------ATERF1(1)                                                                                   ------>NtERF2                                                                                  --------->DEAR3(1)                                                                                  <---------ATERF1(2)                                           --------->ANAC55(1)                    --------->ATERF1(2)                                           <---------ANAC55(2)                    --------->RAP2.3(2)                                           --------->ANAC58                       --------->RAP2.3(3)                                           --------->ANAC46                      --------->ATERF1(1)                                           --------->ANAC55(2)                   --------->RRTF1(1)                                ------->GAMYB ----------->RAV1(1)                --------->RAP2.3(1)                               --------->MYB46(3)               --------->YAB1   --------->DEAR3(2)                             --------->MYB52(1)                --------->ICU4    --------->ERF1<-----                         --------->ANAC58  --------->ANAC58    <---------YAB1   <---------ATERF1(1) <---------At4g35610     --------->ANAC58--------->CCA1(2)   --------->YAB1     <---------At4g35610 ---->HVH21      <---------AtLEC2 --------->ZAT2           <-----------TGA1     --------->At4g35610   cacagctcttaagtgttttgcaagtagaagccaacgagcagagagacgcaacatcgagtttcgtcataatagtctccaagagagccgccggtaacagatc  7405800                                               ----------->HVH21                                          ------>NtERF2                                          <------NtERF2                                          --------->LBD16                                         --------->DEAR3(1)                                         --------->RAP2.6(2)                                         --------->RAP2.3(2)                                         --------->RRTF1(2)                                         ----------->RAV1(1)                                        --------->RAP2.3(1)                                       --------->At4g35610                                          <                                       --------->LBD16                                              <                                       <---------ATERF1(1) <--------P                        --------                                       ------>NtERF2 --------->ALFIN1                      --------->ANAC58           --------->DEAR3(1)         <---------ALFIN1<---------MYB46(3)                   <---------ANAC55(2)        --------->ANAC58              --------->DEAR3(1) <---------MYB46(3)                ----------        --------->ANAC46            ------>ZmHOX2a(1)<---------AtMYB61               ------>ZmHOX2a(1) --->CCA1(2)                        <---------ATERF1(1) <---------AtMYB61           <---------------AGL15 ---ARR14(2)               <---------ARR11(3)  --------->ANAC46                     --------------->AGL15 -->ARR11(3)         --------->ANAC46 --------->ANAC46--------->MYB55(2)        <----------DOF2    <- -->ARR14(2)        ------->GAMYB  <---------ALFIN1  <---------DEAR3(1) <---------GLK1(2)  --------->ANAC58 -->AGP1--------->ANAC58   --------->ARR11(3) --------->SPL7       --------->MYB52(1)================ -ZmHOX2a(2)      -------->P     ------>ZmHOX2a(1)<---------DEAR3(1)  ------->GAMYB----------------->AGL1   caggcttctctcgccatcgcaaccctcaacatctcctcctccgccgcatacgacggtggtggtagccatcaacggagtctctctttcctgatcaagtaaa  7405900                                <---------ARR14(2)                               <---------GLK1(2)                               <---------ARR14(1)                               <---------CCA1(2)   <---------ARR14(2)    <---------ANAC58   --------->ARR14(2) <--------P--------->ARR14(2)                                     <------------CBF --------->LBD16 <---------LBD16--------->GLK1(2)                                    <---------AHL20(1) ---------ANAC55(2) *TSS <---------ANAC58                                            --------->ARR11(3) ---------ANAC46------>ZmHOX2a(2)       <----------DOF2                              <---------AHL20(2) ->AHL20(2)    <------ZmHOX2a(2)<---------ARR11(1)                      <---------AtLEC2    <-------- ->GT1        --------->ARR11(3)<-----------ARR10               <-------TEIL         --------->AHL20(1) --------LBD16<---------ARR14(2)------->TEIL ---------->DOF2   <------ZmHOX2a(2)  <---------AHL20(2) =====================HOX2a_HOX2a       --------->TOE2(3)     --------->AGP1      --------->AHL20(2)   ttgcggaaattgtggcgatctcgggttgtgtccgaatctcatctttaaaaagtccgaatttttagatccatttttcatggacattaaaatattgatatca  7406000                                                                                        <---------ZAT2                                                                                        --------->ZAT2                                              <-------GAMYB                           <---------DEAR3(1)                  <-----------GT1            <------MYB83                           <---------ANAC58        --------->MYB52(1)              <------MYB46(1)                             <---------ANAC58        <---------DOF5.7(2)             <------MYB83  <---------AHL20(2)       <---------ICU4      --------->At5g28300       <---------MYB52(1)<---------YAB1              --------->ICU4        <      --------->DOF5.7(2)<---------MYB46(3)  <------MYB46(1)                  <---------ATHB51      -  --------->MYB52(1)   <---------MYB52(1)   --------->MYB59                <---------AHL20(2)       < -GLK1(1) <------------MYB.PH3(1) ----------->ARR10----------->GT1        --------->AHL20(2)        -   gacaaaacggtaacggtttatttcggtttgttcagttagatttggttcggttatagttaaatttgattcggtttgataaaattatggctcggctcggtat  7406100                <-----------HVH21               ----------->GT1              <---------DEAR3(2)             --------->ETT(1)           <-----------HVH21         <---------DEAR3(2)         <---------MYB46(3)        --------->ETT(1)      <-----------HVH21  <-------TEIL<---------MYB46(3) --------->ARR14(1)                                                                             <---- --------->GLK1(2)                                                                              <---- --------->CCA1(2)             <---------ETT(2)                                      *TSS      <----- ---------ARR14(2)          --------->DEAR3(1)                                     ------------>CBF -------->ARR14(2)        <---------At5g28300                              <---------AHL20(2) <------ ---------GLK1(2)    <-----------ARR10                                    ------------>CBF   <------- -------->ARR11(1)  <---------CCA1(2)                             ---------->DOF2  <---------YAB1   tagattcgggtcgggtcgggtcaaatctcaccgtcgataactgttatcgagttttcatttctgaagttcaaagctattcaatttcatcaatggtggattg  7406200                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                                 ----                                                                                                 ----               <---------RVE1(1)              <---------HSFB2a(1)                               -----               <------ZmHOX2a(2)              <---------HSFC1(2)                                -----              --------->GLK1(2)               --------->HSFB2a(1)                              ------              --------->ARR11(3)              --------->HSFC1(2)                               ------              --------->ARR14(2)             <-----------ARR10                                 ======              <---------ARR14(2)             <---------ARR14(2)                               =======      --------->MYB52(1)   ------>MYB46(1)   --------->ARR11(3)                               <------ZmHOX2a(2)  --------->ZAT6           ------>MYB83      --------->GLK1(2)                 <---------MYB46(3)----  --------->ANAC46       <---------MYB59     --------->ARR14(2)                --------->MYB52(2)<--- <---------ZAT14 <----------DOF2            <---------GLK1(2)                <---------MYB52(1)------ --------->ZAT14------>ZmHOX2a(2)        --------->HSFB2a(2)               <---------ANAC58  <------- --MYB83      <---------ARR11(3)         <---------HSFB2a(2)               <---------ANAC46  -------- --MYB46(1)  <------ZmHOX2a(1)      --------->ARR11(3)                  <---------MYB52(1)  <-------- ----AtMYB61--------->HSFB2a(1)     <---------ARR11(3)                <---------ANAC58     <---------ANAC58 ---WOX13(1)<---------HSFC1(2)      --------->GLK1(2)                 <---------ANAC58<---------AtLEC2 --ARR14(2) --------->HSFC1(2)     <---------GLK1(2)      ------>ZmHOX2a(2)<---------ANAC58<---------ANAC58   gtctacactaccgaaggatcttttagacctaatttcaaaatctctagaatcttccttcgatctcatccaattccgttccgtttgttcttcatggcgatcc  7406300        <---------RAP2.6(3)   ------>NtERF2  --------->DEAR3(1) <------NtERF2 --------->ATERF1(1) <----------CDC5 ----->NtERF2 ---------ATERF1(1) -------->ABI4(1) ------->ATERF1(2) --------DEAR3(1) ------->RAP2.3(3) ------->DEAR3(1) ------->RRTF1(3) ------->RRTF1(2) ------->RAP2.3(2) --------ATERF1(2) ------->RAP2.6(2) ------>RAP2.6(1) ------>ATERF1(1) ------>DEAR4(2) ------>RAP2.3(1) ------>ORA47(2) ------>ERF1 ------>RRTF1(1) ----->At4g35610 -->NtERF2                                            <---------LBD16                     <---------ANAC58 ---->DEAR3(1)                          <------ZmHOX2a(2)                                 <---------ANAC58 ---->ANAC46                           --------->ARR14(2)                           <------MYB46(1) --->MYB46(3)                          <---------ARR14(2)                           <---------MYB46(3) >ZmHOX2a(2)                    --------->At4g35610--------->MYB52(1)               --------->MYB52(2) =======================HOX2a_HOX2a    <---------GLK1(2)                            <------MYB83 =======================HOX2a_HOX2a  --------->LBD16 <---------ANAC46              <---------AtMYB61 ----->LBD16                    <---------At4g35610<---------DOF5.7(2)            <---------MYB52(1) ------ATERF1(1)       ----------->RAV1(1)     --------->LBD16                   <-------GAMYB --->DEAR3(2)    ==============================HOX2a_HOX2a                    --------->LBD16 --ARR14(2)      ------>ZmHOX2a(1) <---------LBD16----------->HVH21           ------>NtERF2 ->ARR14(2)--------->DAG2  --------->ANAC46   --------->LBD16             --------->ARR14(2)<-------- -GLK1(1) ---------->DOF2<---------ALFIN1  ------>ZmHOX2a(1)   <-----------ARR10<---------MYB46(3)   gccgccgagccgaaaagtcctcttccaacacatcatctcccgatcctccccgataacggggggagtctcttccctgattccgccgttggtttccgtctct  7406400                                                                                               ------                                                                                               ------                                                                                              ------>ZmHOX2a(1)                                                                                              =======                                                                                             <-------                                                                                   ==================HOX2a_HOX2a                                                                                  <------ZmHOX2a(2)                                                            <------MYB46(1)       ===================HOX2a_HOX2a                                                            ----------->GT1      --------->ARR11(3)              <---------ANAC58                              <---------MYB46(3)   <---------ARR14(3)        <---------ARR11(3)                                  <------MYB83         <-----------ARR10        <---------ARR14(2)                                 <---------AtMYB61     --------->ARR14(3)        <-----------ARR10                       <---------GLK1(2)                <---------AGP1------        --------->ARR14(2)                      --------->ARR14(2)               --------->ARR14(2) -        --------->ARR11(3)                      <---------ARR14(2)               <---------ARR11(3) -        --------->GLK1(2)           --------->REM1(2)<---------MYB52(1)          <---------ARR14(2)-- <---------At4g35610 --------->ANAC58      <---------ARR14(2)       ---------->DOF2------>ZmHOX2a(2)< <------NtERF2--------->ANAC55(2)<---------ANAC46 <-------TEIL<--------P       ----------->ARR10  --- --------->At4g35610 --------->ANAC58<---------CCA1(2)   <---------AtLEC2    =============HOX2a_HOX2a -CCA1(2)     <---------ANAC58 ------->TEIL--------->ARR14(2)<-------GAMYB   <------ZmHOX2a(1)=======   cgcagcggagtatcttacttatcaagcctcatgaaccgtgtatcgaatcggattcgtttggatggttgatcaaagtcgaggaagatcttaatgttcctcg  7406500                               --------->ANAC58                      <---------ANAC55(2)                ------>ZmHOX2a(2)        <----------DOF2    --------->CCA1(2) --->ANAC46     <-------TEIL   --------->ANAC58 --->TOE1(1)    ====================================HOX2a_HOX2a =====================HOX2a_HOX2a --ANAC46      =====================================HOX2a_HOX2a                                     < --->TOE2(1)  <---------ARR14(2)                                                                ----- ---------->GT1<------ZmHOX2a(2)                                                         --------->HSFB2a(2) -------->At4g35610   --------->ANAC55(2)                                                <---------HSFB2a(2) ------->DAG2 --------->AGP1   --------->ANAC46                                    <---------TOE2(3)- ---------At4g35610<---------MYB52(1)        --------->LBD16                       <---------TOE1(3)< ------>SPL7  --------->ARR14(2) <---------GLK1(2)               --------->HSFB2a(2)     --------->HSFC1(1) ======================HOX2a_HOX2a           ------>ZmHOX2a(1)   <---------HSFB2a(2)   <-------TEIL <   taaggtgactcttttagatccgttatgtgatacaagaaactcaattcctgagaatttccctcgtgttctcgatatgtccaagtttaaggttcgagaattg  7406600                                 <------MYB46(1)                                 <------MYB83                     <-----------GT1                                           --------->ARR11(3) ---------ANAC58  --------->ATHB51   --------->ARR11(3)                     <---------ANAC55(2) ---->MYB59   <-------TEIL   <-----------RAV1(1)                            --------->ANAC55(2) ---------->GT1   <---------ICU4<---------MYB46(3)                     <---------MYB46(3)<---------YAB1 ---------ANAC58 --------->ICU4 <---------AtMYB61                 <---------At4g35610<---------GLK1(2) ---------ANAC46 <---------YAB1<---------MYB52(1)              ---------->DOF2 --------->GLK1(2)   ggtcgtgaattcaagcttcattatttcaatactgttggtgatattgtagagagtttgtatttggagaaagctgttgttaagtatctagattgtgatggag  7406700  Previous    Next  AGI:  At2g17020.1    Description:  F-box family protein (FBL10). Identical to F-box/LRR-repeat protein 10 (FBL10) [Arabidopsis Thaliana] (GB:Q9SDA8;GB:Q8LF00); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G55590.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64764.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47445.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 7403419    to: 7405920    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g17030.1    Description:  F-box family protein. Identical to F-box protein At2g17030 [Arabidopsis Thaliana] (GB:Q3EBZ2;GB:Q0WRT1;GB:Q7XJL8); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G17036.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47506.1); contains InterPro domain Protein of unknown function DUF295 (InterPro:IPR005174); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 7406185    to: 7408014    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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