Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    ------>MYB46(1)                                                                  ------>MYB83                                                                <---------MYB59       --------->ARR11(3)                                                          --------->AtMYB61           --------->ARR14(2)                                                          <---------ICU4              <---------ARR14(2)                                                       <---------ALFIN1               <---------ARR11(3)                                                       --------->AtMYB61             <------ZmHOX2a(1)                                                    --------->AtMYB61            --------->ALFIN1             ------>ZmHOX2a(1)                     --------->MYB46(3)          --------->ZAT2  ------   <---------ANAC58    <----------DOF2   <----------DOF2----------->RAV1(1)    <---------At4g35610   <---------ANAC58------>ZmHOX2a(1)  <-----------GT1 --------->MYB46(3)       <---------ZAT2<------- >ARF1  <---------At4g35610       <---------ARR14(2)--------->ANAC46          --------->LBD16-------- -HVH21 --------->At4g35610       --------->ARR14(2)<---------ALFIN1         <-----------RAV1(2)   ctatgccttgagctcctactcctctctttcccttcagatttgactttctcatcaccaccaccattaccaacttcattctccaggtgaggattttcaactg  7354100                                                                  ----------->GT1                   -                                                                 --------->DAG2               -------                                                               ---------->DOF2                -------  --------->HSFB2a(2)                                  <---------HSFB2a(2)                    -------  <---------HSFB2a(2)                                  --------->HSFB2a(2)                 <---------ALFIN1 ->GAMYB                                            --------->GLK1(2)<-------TEIL       --------->YAB1 --At4g35610          ---------->DOF2              <---------GLK1(2)<--------P        --------->ANAC58 ->At4g35610--------->YAB1 <-------TEIL--------->TOE2(3)   ---------->DOF2            --------->ANAC58   tcttctctaagtactcatactcatcaaagtccattctataacttcaatacctagaatctagaaaagaaaggtagattagtagaataacaagcacaacctc  7354200                                     <---------At4g35610    <-----------HVH21           --------->ANAC46   <---------ARR14(2)   --------->WOX13(1)           --------->ANAC58   --------->ARR14(2) -------->TOE2(3)               --------->ANAC58   <---------TCP20        --------->SPL7 -->TOE2(3)                    --------->SPL7   --------->MYB59         <---------ARR14(2) -->AtMYB61            <---------YAB1--------->At4g35610                --------->ARR14(2)         -- -->TOE1(3)           --------->TOE2(3)------->GAMYB                ------>ZmHOX2a(1)    <---------WOX13(1)   aacatcagtcactcccaatggaaacattattcatacggcaactgtctaattcggttccacagtcaaattcctccgatacggcgaatttcagattgaaatt  7354300                                                                                      --------->ZAT2                                                                      <------ZmHOX2a(1)  --------->At4g35610                                      --------->ANAC58            <---------ANAC46    <---------At4g35610                        <-----------GT1                        <---------DEAR3(1)     --------->HSFC1(2)       --------->ARR14(2)-------->P   --------->ANAC58       --------->MYB52(1)       --------->HSFB2a(1)       <---------ARR14(2)<-----------------AGL1              --------->ARR14(2)       --------->At4g35610 --------->DAG2  --------------->AtSPL8------->GAMYB     --------->DAG2               <---------HSFC1(2) -------->DOF2<---------ZAT2          <---------MYB52(2)---------->DOF2               <---------ZAT2   gaaaaggcgaattggcaactcggtacttacctctctggcaacgaaacttgaagaagcgaaaaggaacggcgaggagagagagactcgaagctgctctcaa  7354400                                                                      <---------MYB46(3)                                                                     <---------AtMYB61                                                                     --------->ALFIN1                                                                   <---------ANAC46                                                            <---------ANAC58                       --    <---------HSFC1(2)                     ----------->HVH21<---------ANAC58                     ----    --------->HSFB2a(1)        --------->YAB1              <---------HSFC1(2)             *TSS<------    <---------HSFB2a(1)      --------->ANAC58              --------->HSFC1(2)  --------->ZAT6 <------    --------->HSFC1(2)       --------->ANAC58   <------ZmHOX2a(1)  <---------bZIP60(2)  <------MYB83<  <---------GLK1(2)--------->ZAT6 ---------->DOF2<----------ID1   <---------AtMYB61     <------MYB46(1)   tctggaatctcccgctcggtatctctagggcaagaataaagctctgtgaaggagacgaagaagcttgtgaggtggtcgctaactctctgtaggtttactt  7354500                                                                              <---------YAB1                                                                             <---------AHL20(2)                                                                             --------->AHL20(1)                                                                             <---------AHL20(1)                                                                            --------->YAB1 ------>MYB46(1)                                                           <---------YAB1 ------>MYB83<-------TEIL                                                  <---------AHL20(2) ------->MYB46(3)               <---------ANAC58               <---------AHL20(2)      <---------At5g28300 ---->P    <---------ARR14(2)   <---------ANAC58               --------->AHL20(2)     <-----------GT1 ---ANAC58 --------->ARR14(2)   <---------ANAC46 <XXXXXXXXXXXXXXXXXXXXMIR1886.2--------->YAB1 ---ANAC58 <---------GLK1(2) <----------DOF2 ------------>CBF  <---------AHL20(1)    <<<<<<<<<MYB98 ---------ALFIN1  --------->TOE2(3)    ---------->DOF2     <---------AHL20(2)--------->AHL20(2) <----   acccacttgcccagattcagcctaaaaccctctttcgggtccaaaggcccaatccaagtttttattttattttttatattataatatgttactgtgtttt  7354600          <-----------GT1       <---------ARR11(3)       <---------ICU4       --------->ARR11(3)       <---------AHL20(1)                                                                          <-       --------->AHL20(1)                                                                    --------     <---------AHL20(1)                                                            --------->AHL20(2)     <---------AHL20(2)                                                           --------->AHL20(2)-    --------->YAB1                        ---------->DOF2                         --------->AHL20(1)<   <---------AHL20(2)                <---------AHL20(2)                           <---------AHL20(2)-  --------->AHL20(2)          <-----------GT1                       ----------->GT1<---------AHL20(2) -------GT1           ------>ZmHOX2a(1)  --------->YAB1           <---------At4g35610  <---------AHL20(2)   actatataatattttctctacttcctattgttttactatataatcaaagttttcatcgttcaatctggagatgtcaaaatcaaatttaataaatgtgcta  7354700                                                                              --------->ARR11(3)                                                                              <---------ARR11(3)                                                                           --------->AHL20(2)                                                                      --------->AHL20(1)          <---------AHL20(2)                                          <---------AHL20(1)         <---------AHL20(2)                                        --------->AHL20(2)     <---------AHL20(2)                                            <---------AHL20(2)     --------->AHL20(2)                                          --------->AHL20(2)    --------->AHL20(2)                                        --------->AHL20(1)   <---------AHL20(2)                                         <---------AHL20(1)                   -- --------AHL20(2)                                             --------->AHL20(2)          --------->AHL20(2) --->GT1 --------->AHL20(2)              --------->ZAT6       <---------AHL20(2)          <---------AHL20(2) -------->AHL20(1)                --------->AHL20(2)         --------->AHL20(2)       --------->AHL20(2) ---------AHL20(1)       <---------AHL20(2)                  <---------AHL20(2) --------->TOE2(3)  <- -------->AHL20(2)       --------->AHL20(2)              <---------YAB1    <---------AHL20(2)  ------   aatattttaaattaaatatcgaactatataattccataaaataacacaatttttagtttataaataaatttatatattaaaatctcaaatatttaaatga  7354800                                                                                                    x                                                                                                    <                                                                                                   xx                                                                                                   xx                                                                                                   <-                                                                                                  <xx                                                                                                 <xxx                                                                                                 <xxx                                                                                                 xxxx                                                                                                 <xxx                                                                                                 <xxx                                                                                                 <xxx                                                                                                 <xxx                                                                                                 <xxx                                                                                                 <xxx                                                                                                 <xxx                                                                                                xxxxx                                                                                                <xxxx                                                                                                <xxxx                                                                                                <xxxx                                                                                                <xxxx                                                                                                <xxxx                                                                                                <xxxx                                                                                                <xxxx                                                                                                <xxxx                                                                                                <xxxx                                                                                               <xxxxx                                                                                               xxxxxx                                                                                               <xxxxx                                                                                               <xxxxx                                                                                               <xxxxx                                                                                               <xxxxx                                                                                              <xxxxxx                  --------->TOE2(3)                                                           -------                <---------TOE2(3)                                                        <---------DAG2               --------->MYB52(1)                                                        <----------DOF2               <-----------GT1                                    --------->YAB1      <---------ALFIN1  --------->AHL20(1)                                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------AHL20(1)  <---------YAB1              <---------TOE1(3)         ---------->DOF2  <xxxxxxx ------->AHL20(2) --------->TOE1(3)               <---------TOE2(3)   xxxxxxxxxxxxxxxxx>smallRNA(si3) --------AHL20(2)----------->GT1           --------->AHL20(2)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --->ATHB12  <---------MYB52(2)    --------->YAB1 --------->MYB59xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   tttatatattatacaaataacgttatatttatgtcatttataagtttaaatttaggtttcaacttaaatcatatatatgaaagttgcccaactttttcca  7354900                      --------->AHL20(1)                      --------->AHL20(2)                      <---------AHL20(1)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                --------->ANAC58           <---------ICU4         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)        --------->bZIP60(2)        xxxxxxxxxxxxxxxxx>smallRNA(fl3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <xxxxxxxxxxxxxxxxsmallRNA(fl3)      xxxxxxxxxxxxxxxx>smallRNA(s)    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)   ----------->HVH21  <---------AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   xxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------YAB1   --------->ANAC46 xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <---------AHL20(2) xxxxxxxxxxxxxxxxsmallRNA(le3)                            --------->AHL20(2) xxxxxxxxxxxxxxxxxxsmallRNA(le3)                      --------->AHL20(2) xxxxxxxxxxxxxxxxx>smallRNA(i2)                       <---------AHL20(2) xxxxxxxxxxxxxxxxxxsmallRNA(i2)                   <---------AHL20(1) xxxxxxxxxxxxxxxxxsmallRNA(si3)                   --------->AHL20(2) xxxxxxxxxxxxxxxsmallRNA(le3)                     <---------AHL20(2) xxxxxxxxxxxxxxxxxxsmallRNA(si3)<-------MYC3      --------->AHL20(1) xxxxxxxxxxxxxxxxxsmallRNA(le3)<---------O2   <---------AHL20(2)                        ---------->DOF2 ---------->AG  --------->ANAC58------->MYC3  --------->AHL20(2)             ----------->GT1     <--- xxxxxxxxxxxxxxxxsmallRNA(le3) --------->O2 --------->TOE2(3)  ----------->GT1        --------->YAB1   tatgagtgacacatcatcacacaataaaatgacatgtgtcattctacattaattaattaaaaaattagtaaaactaattgagaaaaaatcaaaagtctat  7355000  Previous    Next  AGI:  At2g16940.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G09880.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47406.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Splicing factor, CC1-like; (InterPro:IPR006509) Range:  from: 7349689    to: 7354490    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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