Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          <---------ALFIN1                                                     <---------ALFIN1                                                     --------->ANAC46                                                    -------->P                                                    ------>MYB83                                                    ------>MYB46(1)                                                   ----------->RAV1(1)                                                  --------->AtMYB61                                               --------->ANAC58                                               --------->REM1(1)                                               --------->ANAC46                          <---------MYB59                                               <---------ALFIN1                          --------->TOE2(3)                                               --------->ANAC58                <---------At4g35610                                             ----------->RAV1(1)       <---------HSFB2a(2)                                          --------->ANAC58             --------->HSFB2a(2)                 ------>MYB46(1)          --------->ANAC46   <----------DOF2   --------->At4g35610                 ------>MYB83             --------->ANAC58 <---------DAG2      --------->ZAT2               ------->GAMYB              XXXXXXXXXXXXXXXXXXXX>MIR171B/C       <---------ZAT2              --------->MYB46(3)        ---------->DOF2 --------->AtMYB61  --------->ANAC46   gacaatagacttcataaccaactcaggtctcatcactcccattgaagccacaccaacaccactctttgctgttccataagcagctcccatacctaaaacc  7167600                                    <---------ATHB12                                  --------->WOX13(1)                             <---------ALFIN1                            ----------->HVH21                       --------->GLK1(2)                          --------->ANAC46              --------->TOE2(3)         --------->ZAT6                        --------->ANAC58                <---------MYB59          --------->ZAT18                        --------->ANAC46         <---------ATHB12  <---------ARR14(2)                        --------->ANAC58   --------->YAB1          --------->ARR14(2)             <---------ARR11(3) --------->MYB46(3)<---------ICU4   <---------GLK1(2)              ---    ----------->GT1   <-----------GT1--------->YAB1    <---------ANAC55(2) ------>ZmHOX2a(2)    <----   aaaatccagtaacaacatctcattttacgcccgacccaatcacaatcacaaatcaatacctaaaatccagattctgatctaagaacactaatacatcgat  7167700                                              --------->HSFB2a(2)                                            ----------->RAV1(2)                                            --------->At4g35610                                          --------->YAB1                                         <---------ATHB12                        ---------->DOF2--------->WOX13(1)                   --------->YAB1   --------->ANAC46                --------->CCA1(2)            <---------ATHB12        --------->ANAC58              --------->YAB1          --------->MYB52(1)        --------->ANAC58     ---------->DOF2         <---------WRKY12       <---------HSFC1(1)<------ZmHOX2a(2)--------->ARR11(1) ------>WOX13(1)  <---------YAB1<---------HSFB2a(2)    <------ZmHOX2a(2)                        <---- --ZmHOX2a(2) <---------GLK1(2) --------->HSFB2a(2)  --------->At4g35610            --------->GLK1(2)   caattagtaggccaacgattctcataaaaagtctctagaagcaatcatctggatcagatcaaagggaatgatacgaattggaagagaatcgagtgagagg  7167800                                           --------->ANAC58                                        <------NtERF2                                       ------>NtERF2                                      --------->DEAR3(1)                                      --------->RRTF1(3)                                      --------->RAP2.3(3)                                      --------->RAP2.3(2)                                     --------->ERF1                                     --------->RRTF1(1)                                     --------->RAP2.6(1)                                     <------NtERF2                                     --------->ATERF1(1)                                     --------->DEAR4(2)                                     --------->ORA47(2)                                     --------->RAP2.3(1)                                    <---------RRTF1(1)                                    <---------ATERF1(1)                                    <---------RAP2.6(1)                                    <---------DEAR4(2)                                    <---------DEAR3(2)                                    <---------ERF1                                    <---------ORA47(2)                                    --------->ABI4(2)                                    <---------RAP2.3(1)                                    ------>NtERF2                                   <---------RAP2.3(3)                                   <---------RRTF1(2)                                   --------->ALFIN1                                   <---------RAP2.3(2)                                   <---------RRTF1(3)                                   <---------ATERF1(2)                                   --------->DEAR3(1)                                   --------->ATERF1(2)                                   <---------DEAR3(1)                                  --------->ATERF1(1)                                  --------->DREB2C(1)                                  <------NtERF2                                  --------->DEAR4(2)                                  <---------At4g35610                                  --------->At4g35610                                  <---------ABI4(1)                                  --------->RAP2.3(1)                                 <---------RAP2.3(1)                                 <---------RAP2.6(1)                                 <---------ATERF1(1)                                 ------>NtERF2                                 <---------RRTF1(1)                                 <---------ORA47(2)                                 <---------ERF1                                <---------ANAC46                                --------->ALFIN1                                --------->ATERF1(2)                                <---------RAP2.6(2)                                <---------RAP2.3(2)                                <---------RAP2.3(3)                                <---------RRTF1(2)                                <---------RRTF1(3)                                <---------ATERF1(2)                                <---------DEAR3(1)                               <------NtERF2                               --------->RAP2.3(1)                                                  -                               --------->ATERF1(1)                                                 <-                               <---------ABI4(1)                                                   --                              <---------ATERF1(1)                                                 ---                <------ZmHOX2a(1)<---------DEAR4(2)                                     <---------ARR11(3)            --------->SPL7    <---------DEAR4(2)                            <----------CDC5       <--          <---------SPL7      <---------RAP2.3(1)                          --------->At4g35610    <--         <---------ANAC58    <---------DEAR3(1)                            ------>NtERF2--------->ARR11(3)         <---------ANAC58   --------->At4g35610                            <---------At4g35610   <---         <---------ANAC46   <---------At4g35610 --------->At4g35610    --------->DEAR3(1)     <------        <-----------------------TaNAC69(2) --------->ANAC58        <-------TEIL ------->TEIL  <------ --ZmHOX2a(1)<-----------RAV1(2)--------->DEAR3(1)     --------->MYB52(1) --------->DEAR3(1)  -------   agaaggaaatggcgtacaggagaagacgagagcggcggcggcgccaaggaagccgaagaacggagcagtttcatcgccgctgaacgtagacatcttctcg  7167900   ---------->DOF2 ----->ZmHOX2a(2)          --------->ARR14(2) -----ZmHOX2a(2)           ------->TEIL ------->GLK1(1)           <---------ARR14(2) ------>ARR14(2)    ------>ZmHOX2a(2) -------AGP1       <------ZmHOX2a(2) -------ARR14(2)  --------->ARR14(2)                                      *TSS ------CCA1(2)    <---------ARR14(2)                                 <---------ANAC46 ---HSFB2a(2)  ------>ZmHOX2a(2)                                    --------->ATHB12 ---LBD16    <---------ARR14(2)                                  <---------At4g35610               <- -->HSFB2a(2)--------->ARR14(2)                                  --------->At4g35610<---------ANAC46-   gatctcaaagttttggatcggatcgtttgaatctggagggagagagagagaattggattttgttttcagatgagtggaagagaacgacgtagtctgtttg  7168000                                                                    <---------------AGL15                                                                    --------->TOE2(3)                                                                    --------------->AGL15                                                                   ----------------->AG                                                                   ----------------->AGL3                       ----------->GT1          ---------->DOF2    <-----------------AGL2           <---------MYB46(3)        <------NtERF2                 <-----------------AGL3        <---------MYB46(3)  --------->ICU4     --------->AHL20(2)  ----------------->AGL2 --------YAB1        ------->MYC3    --------->LBD16          <----------DOF2                    <--- -------->YAB1       <-------MYC3  <---------LBD16         <-----------GT1       <---------REM1(2) --   tataatagagttgttgttgaacacgttgtaattttgggccgggtcgaaattaaagcccatttatctttttccataaacgggtctacatgggctatttttt  7168100                                                                                       <---------ARR14(2)                                                                                       --------->ARR14(2)                                          <---------ICU4                           <-----------------AGL2                                          --------->YAB1                           <-----------------AGL3   ------->GAMYB                          --------->ANAC46  ------>MYB83         <---------ARR14(2)  --------->MYB46(3)                    <-----------GT1     ------>MYB46(1)      --------->ARR14(2) < --------GT1 <-----------GT1 <---------AHL20(2)           <---------MYB59        --------->GLK1(2)  - ------->MYB46(3)           --------->AHL20(2)   --------->ATHB12               <---------GLK1(1)   -   aacaacagacccatataactaaatgggctattaaatccatataaacatcactaattgggaccaaatagaaatagtatttggcaaatctgtatatggattc  7168200                                                                             <----------DOF2        x                                                                           ---------->ID1         ---                                                                          <-----------GT1        ----                                                                    <--------HAHB4              -----                 <---------TOE1(2)                                  <---------ICU4              <xxxx                 <---------TOE2(2)                                  --------->YAB1              ----- <---------YAB1 <---------ANAC46                                   --------->ICU4               ----- --------->AHL20(2)              ----------->HVH21                 <---------ATHB12             ----- <---------AHL20(2)         <---------MYB46(3)                   --------->WOX13(1)            <xxxxx ---------AHL20(1)   <-----------GT1                          --------->AtLEC2               xxxxxxxx -------->AHL20(2)--------->ANAC58                            --------->ANAC58            <---------- -------->AHL20(1)--------->ANAC58                            --------->ANAC58       <---------YAB1--   aatataatttgtttagtcgcatgtaacaagttgttgtgacaacgtgaagaattgagaagtactcatgcaatcattttttctttttttttgataaacccta  7168300                                                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                     --------->YAB1                                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                  xxxxxxxxxxxxxxxx>smallRNA(i)                                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                 xxxxxxxxxxxxxxxx>smallRNA(i)                                                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                          --------->DEAR3(1)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                              --------->ANAC58            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                             <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxsmallRNA(s)                           <---------ABI4(2)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          --------->ANAC58               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                          --------->ANAC58               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)xxxxxxxxxxxxxxxxxxx>smallRNA(l2)                        ---------->DOF2                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->GLK1(2)  --------->ARR14(2)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(i)------->TEIL           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->AHL20(1)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------>ATERF1(2)     xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(s)<---------ZAT14 ----->RAP2.6(3)   --------->At4g35610             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ->MYB46(1)  <---------At4g35610     <---------AHL20(1) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --->P       --------->At4g35610     --------->AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ->MYB83 <-----------HVH21<xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(i) ---->MYB52(1)     <------NtERF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxsmallRNA(i)<---------ARR14(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(si3)--------->ANAC58 <---------ZAT14  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) -GT1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   --------->ZAT18 <------ZmHOX2a(1) ------->LBD16   <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------ZAT18<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ccggctaatctggtcagcctcggcagaaacgcaccgaaatattttagagtggacttctcaccgaaggactaccatactgtctgttctgaatttgaaatgt  7168400                                              <-----------RAV1(2)                                              xxxxxxxxxxxxxxxx>smallRNA(s)                                              xxxxxxxxxxxxxxxx>smallRNA(i)                                            xxxxxxxxxxxxxxxx>smallRNA(s)                                            --------->MYB52(1)                                          <---------MYB111(2)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                          <---------MYB46(2)                                          <---------MYB111(1)                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                 xxxxxxxxxxxxxxxx>smallRNA(i)                                <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                <------NtERF2xxxxxxxxxxxxxxxx>smallRNA(i)                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                               xxxxxxxxxxxxxxxx>smallRNA(i)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              <xxxxxxxxxxxxxxxxsmallRNA(i)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     --------->MYB52(1)                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <xxxxxxxxxxxxxxxxsmallRNA(i)                             --------->ZAT2 -------->P     --------->WRKY38(1)                             --------->At4g35610           --------->WRKY12                            <---------ATERF1(1)xxxxxxxxxxxxxxxx>smallRNA(i)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <---------MYB59                           <xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxxxxxx>smallRNA(i)                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                          --------->RAP2.6(3)xxxxxxxxxxxxxxxx>smallRNA(s)                     <xxxxxxxxxxxxxxxxsmallRNA(i)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     xxxxxxxxxxxxxxxx>smallRNA(i)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxsmallRNA(s)                 <---------ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)>>>>>>>>>MYB1                 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(i)                 --------->ARR14(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)>>>>>>>>>MYB2              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)             xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             xxxxxxxxxxxxxxxx>smallRNA(i) --------->MYB46(3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          ---------->DOF2xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        <--       <---------TOE2(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                     -----   tttccgactaatgaaaggggatagtcagaccggctgcatttctaactaccaggtaaaccaattgacccaaggcctaactgagagacttctcaaaacaaat  7168500  Previous    Next  AGI:  At2g16510.1    Description:  vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5). Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 1/3/5 (AVAP5) [Arabidopsis Thaliana] (GB:P59227;GB:Q39037;GB:Q39038;GB:Q39039;GB:Q42424;GB:Q96298); similar to AVA-P1 (vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 1), ATPase/ hydrogen ion transporting ATPase, rotational mechanism [Arabidopsis thaliana] (TAIR:AT4G34720.1); similar to ATVHA-C3/AVA-P3 (vacuolar-type H(+)-ATPase C3), ATPase [Arabidopsis thaliana] (TAIR:AT4G38920.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78114.1); contains InterPro domain ATPa Range:  from: 7166711    to: 7167974    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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