Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  ----------->RAV1(1)                                           <---------At4g35610                                           --------->At4g35610                                    <---------ANAC58                                    <---------ANAC46                                    <---------ANAC58                                <---------------AGL15                                  ---------->DOF2                 --------->ANAC46<---------MYB52(1)                                  --------->CCA1(2)                 --------->O2  <---------------AGL15                              ----------->GT1               <---------ALFIN1<-----------------AGL3  <-----------GT1        ---------->DOF2       <    <----------DOF2            --------------->AGL15 <-----------HVH21    <----------DOF2        ----   ctgtttcttttccctccccacgagaatggattacccttacttggaagctccaacatatcacagcattccaacatgtctttgaaagagataaaagatgagt  6777400                                                                         <----------DOF2                                                                       <-------TEIL   ------>NtERF2                           --------->TOE1(3)        --------->HSFB2a(1)  --------->ANAC58                         --------->TOE2(3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------ALFIN1                        ----------->GT1      ------->TEIL  --------->ANAC46       >>>>>>>>>>>>>>>>>LFY --------->AHL20(2)   <---------TOE2(3)      <---------ATHB12  --------->ANAC58    <-----------GT1    <---------TOE2(3)  --------->ANAC58    <---------MYB52(1) ---------ALFIN1  <----------DOF2       --------->MYB52(1)  --------->ANAC58   <-------GAMYB      --- ----->PCF2     ------>ZmHOX2a(1)    --------->YAB1         --------->AtLEC2  <-----------RAV1(1) <--   ccccacgccttgggcctcctcttttctccccattgtgaagaataacgttaaaatcccctaacatgcaccaaggttcttttctgttgagtccaatctttga  6777500                                      ------>ZmHOX2a(2)                                      =====================HOX2a_HOX2a                                     <------ZmHOX2a(2)                                     <---------GLK1(1)                                     ======================HOX2a_HOX2a                                     --------->GLK1(1)                                    --------->ARR14(3)                                    <---------ARR14(2)                                    <---------ARR14(3)                                    --------->ARR11(3)                                    <---------AGP1                                    --------->ARR14(2)                                    <---------ARR11(3)                                    <---------ARR11(1)                                    <-----------ARR10                                   <---------ARR14(1)                                 --------->RAP2.6(2)             --------->YAB1              ------>MYB83  ---------->DOF2                     <---------ATHB12              ------>MYB46(1)   <---------LBD16          ---------->DOF2                         <--- ------>ARR11(3)  <---------ANAC58 <---------CCA1(2)<------ZmHOX2a(1)  <----------ID1            ---- -------ARR11(3)  <---------ANAC58--------->LBD16<-----------RAV1(2) ---------->DOF2             <---   aatcttttcccaaaccaaatgcttgttactaaaagccggatctccataaacacaggagacaaagaaatcataagagccaaattgtatttgaaaatcaata  6777600                                                                                        --------->ZAT14                                                                                      <---------ZAT18                                                                                      <---------ZAT14             <-----------ARR10                                                 --------->ZAT18             <---------ARR11(1)                                                --------->ZAT14             --------->ARR11(3)                                                <---------ZAT14      -             <---------ARR11(3)                                            --------->LBD16       ----             <---------ARR14(2)                                           ------->GAMYB --------->ZAT18            --------->GLK1(1)                                           ------>MYB46(1) <---------ZAT14            <---------CCA1(2)                                           -------->P    --------->REM1(2)         --------->LBD16                                                ------>MYB83  --------->ZAT14       <---------LBD16                                                  --------->MYB52(1)      <----     --------->ARR14(2)                   --------->HSFB2a(2)          --------->MYB52(1)       <---- <-------TEIL--------->ARR14(2)           <---------HSFB2a(2)          --------->MYB55(1)      <----- ------TOE2(3)                           <xxxxxxxxxxxxxxxxsmallRNA(s) --------->AtMYB61 <---------REM1(2) ----->DAG2 <---------GLK1(1)  <-----------GT1                        --------->MYB46(3)<---------ZAT18 ------TOE1(3)               <-----------GT1                 <---------ALFIN1  <-------TEIL--------->ANAC46   aggttcttatccgcatatcttacatcgatatttacacccttcttccaaaacagagctaaacccccactgagaccaaccgggttcactgtgtacacacgat  6777700                     ------>ZmHOX2a(2)                    <------ZmHOX2a(2)                    --------->CCA1(2)                   --------->AGP1   ------->GAMYB   --------->ARR14(3) -------->MYB52(1) <---------ARR14(2)                                   <------ZmHOX2a(1) ----->YAB1        --------->ARR14(2)                                <---------LBD16 --ZmHOX2a(2)      <---------ARR11(3)                                <-----------RAV1(2) -----YAB1         <---------ARR14(3)                             --------->ANAC46 ----ARR11(3)      --------->ARR11(3)                     *TSS  <---------ALFIN1          --------->At4g35610   cataaccgagccattcttgaagatctactactacattactacaattcttggtttccatcaaaaacaacacctcaggaaaatgagaacgtctcatctccat  6777800                                                                                --------------->AGL15                                                                               ----------------->AGL1                                                                               <-----------------AGL1                                                                               ----------------->AGL3                                                                               <-----------------AGL3                                                                             --------->PCF5                                                                           <---------DEAR3(2)                                                                         <---------ORA47(1)                                                                       <---------SPL7       ---------                                       ------------>CBF            <---------ANAC58      <---------TCP16(1)           ------------>CBF          ----------->HVH21             <---------ANAC58      --------->PCF2          --------->TOE2(3)     --------->ANAC58              <xxxxxxxxxxxxxxxxsmallRNA(s)--------->TCP16(2)         ----------->GT1        --------->ANAC58            --------->ATHB12 --------->PCF2--------->MYB46(3)     <------ZmHOX2a(1)    <---------SPL7               <XXXXXXXXXXXXXXXXXXXXMIR841B*     <---------PCF5   gagtctaggaatcgtcaattcatgagaccgtcccaagccttgacaattccaactaataagactcattaggcgttggacggtccctcaattgggaccacca  6777900                                         <---------ATHB12                                  <---------ZAT18                                  --------->ZAT18                                ------->PIF5                                <-------MYC3                                             <---------ARR14(2)    <---------ZAT2              <-------MYC2                 <----------DOF2             --------->ARR14(2)    <---------At4g35610         ------->MYC2     <---------DAG2                         <---------CCA1(2)    --------->At4g35610         <-------PIF5     <----------DOF2               ------->TEIL    --------->ZAT2          <---------ZAT18 --------->At4g35610           --------->At4g35610       - >AtMYB61         ------->TEIL  ------->MYC3<---------At4g35610           <---------At4g35610       -   ttgttgagctgagcttgatgaattttgcagtgctcgtgcccaaatcaactgcttttctcttgtctttggaacttgaagctgaacccttccctatcttctg  6778000                   <---------GLK1(1)                  <---------ANAC58                   --------->GLK1(1)                  <---------ANAC58                  <---------AGP1                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  <---------ARR14(2)                ------>NtERF2                  --------->ARR11(3)              <---------ANAC58                  --------->ARR14(2)        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               --------->ALFIN1          <---------ANAC58               <----------DOF2             <---------ANAC46            <---------AtLEC2               <---------DAG2   ----------->RAV1(1)        <---------AtMYB61   <---------ANAC58     <---------ANAC58 --------->At4g35610------>ZmHOX2a(2)    <---------ANAC58    xxxxxxxxxxxxxxxx>smallRNA(i) -------->ANAC58  <---------ARR11(3) <---------ANAC58 <---------ANAC46 <---------ANAC58 -------->ANAC58 <---------CCA1(2)   <---------ANAC58------>NtERF2 <----------DOF2---------->DOF2   atcagcaacattgtaatgtggatctctcggttttggtttccttgcatgttttgggggcctgtttctctgctttgcttttttctgaaaagtcccagtagag  6778100                                                                          ------>ZmHOX2a(1)                                     --------->ZAT6                 -------->P                   <---                            <---------MYB52(1)                   --------->HSFC1(2)           -------                       <-----------GT1    ---------->DOF2        <---------HSFC1(2)      --------->DAG2                 xxxxxxxxxxxxxxxx>smallRNA(i)               --------->ANAC58           ---------->DOF2     ---------->DOF2   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->ANAC58--------->ATHB12 <-------   cctgtctcaaagagaccagggctataaaccgttggactatcagtaaaaggctgagagagagcaaggaaactacctccttcattgagcacaaaaggcttca  6778200                                                                     <-------TEIL                                                                    <--------P                                                                 <---------TOE1(3)             <-----    ----------->RAV1(2)                               <------ZmHOX2a(1)                        ------ <---------ARR14(2)                                  <---------At4g35610                       ------ --------->ARR14(2)                                  --------->At4g35610         <----------DOF2 ------LBD16                                       <-----------RAV1(2)        <---------ALFIN1 <----- ---->HVH21                    xxxxxxxxxxxxxxxx>smallRNA(i)      <---------AtMYB61            ------- ----HVH21              <----------DOF2         ------>ZmHOX2a(1)<---------TOE2(3)           <-------   ccggttccctgagccaacttgtgtttctttcaggctgagagtcttctatcctctcaggagacgagttgaggttgattctgccactttgactcgaagaacc  6778300  Previous    Next  AGI:  At2g15510.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 3.0e-20 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus) Range:  from: 6773704    to: 6777758    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g15520.1    Description:  transposable element gene. similar to zinc finger protein, putative [Arabidopsis thaliana] (TAIR:AT3G24680.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1) Range:  from: 6777866    to: 6779317    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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