Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <xx                                                                                                xxxxx                                                                                                xxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxxxxxx                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxx                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------ANAC58                                                   --------->ICU4                xxxxxxxxxxxxxxxxxxxx                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------ANAC58                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxx                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  xxxxxxxxxxxxxxx                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxxxx                             --------->DAG2    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(i)                             xxxxxxxxxxxxxxxxx>smallRNA(se3)                    xxxxxxxxxxxxxxxxxxxxx                             xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 xxxxxxxxxxxxxxxxx>smallRNA(se3)                            ---------->DOF2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxx                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                            <xxxxxxxxxxxxxxxxxsmallRNA(fl3)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->ZAT6xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                     <----------DOF2 <----------DOF2  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------                    <---------DAG2<xxxxxxxxxxxxxxxxsmallRNA(le3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 <-----------GT1 <---------ZAT18 xxxxxxxxxxxxxxxx>smallRNA(i)  xxxxxxxxxxxxxxxxxxxxxx              --------->YAB1<xxxxxxxxxxxxxxxxxxsmallRNA(se3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             <---------YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)            --------->AHL20(2)   --------->ZAT18 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxxxx       <---------MYB52(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)------>ZmHOX2a(1)   -------->Pxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) >CCA1(2)   <---------AHL20(2)xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   aaaattgcccttattttaataaccttttgtaaaagtgccctttcctgaaggccatttttaaaactaccccttctaatatgccaaatgactgtcttaccct  6573400             <-----------GT1           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                               <-----        <------MYB46(1)                                                                       <xxxxxx        <------MYB83                                            ------>ZmHOX2a(1)             -------       --------->MYB59                                 ---------->ID1                        <-------    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <-------   <---------ICU4                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         --------   --------->YAB1                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <------NtERF2   --------->ATHB12                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <xxxxxxxxxxx  --------->ICU4                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------ATERF1(1) <---------WOX13(1)                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        --------->LBD16 xxxxxxxxxxxxxxxxxsmallRNA(le3)              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------ATERF1(2) xxxxxxxxxxx>smallRNA(i)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      --------->ATERF1(2) xxxxxxxxxxxxxxxxxx>smallRNA(si3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------DEAR3(1) xxxxx>smallRNA(le3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        --------->DEAR3(1) xxx>smallRNA(i2)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)               <---------LBD16 xxxxxxxxxxxxxxxxxsmallRNA(fl3)    ---------->ID1     --------------------->WRI1      --------->ATERF1(1) xx>smallRNA(se3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          <xxxxxxxxxxxxxxxxxx xxxxxxxxxx>smallRNA(fl3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <xxxxxxxxxxxxxxxxxxxx xxxxxxxx>smallRNA(le3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <xxxxxxxxxxxxxxxxxxxx xxxxsmallRNA(se3)                <-----------------AGL1    xxxxxxxxxxxxxxxx>smallRNA(i)------>NtERF2 xx>smallRNA(i2)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         --------->YAB1<XXXXXXXX xx>smallRNA(fl3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           --------->ANAC46xxxxxxxxx --GT1 <---------TOE2(3)<-----------GT1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) >smallRNA(se3)    --------->MYB52(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(s) xxsmallRNA(i)    <-------TEIL<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  xxxxxxxxxxxxxxxx>smallRNA(i)   --   ctgaatgattaggtttcacgttcgtttcacaaacttcttcgttttggcacaaacttcttcgttttcctctccgatttcactcaaaatcgccggcgaattt  6573500                                                                                                   --                                                                                                   --                                                                                              <------NtERF2                                                                 <-----------GT1   --------->YAB1  <-   xxxxxxxxxxxxxxxx>smallRNA(i)                                 <XXXXXXXXXXXXXXXXXXXXXMIR2933A/B   <- ------GT1                                                xxxxxxxxxxxxxxxx>smallRNA(i)       ------>NtERF2 xxxxxxxxxxsmallRNA(i)                                    --------->MYB52(1)      <xxxxxxxxxxxxxxxxxx -->GLK1(1)                                               ------>NtERF2           <xxxxxxxxxxxxxxxxxx --ARR14(2)                                              --------->DEAR3(1)      <xxxxxxxxxxxxxxxxxxx ----ARR10   --------->YAB1                             xxxxxxxxxxxxxxxx>smallRNA(s)        --------- ->ARR14(2)--------->ANAC46 --------->ARR14(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------- xxxxxsmallRNA(s)           <---------GLK1(1)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     --------->RAP2.3(1) xxxxxsmallRNA(fl3)    ------>NtERF2            --------->YAB1  <xxxxxxxxxxxxxxxxsmallRNA(i)--------- xxxsmallRNA(se3)     --------->WRKY12        --------->ANAC46  --------->GLK1(1)--------->ANAC46 --- xxxsmallRNA(si3)     ----------->TGA1xxxxxxxxxxxxxxxx>smallRNA(i)   ------>ZmHOX2a(1) <xxxxxxxxxxxxx XXXXXXXXXXXXXMIR2933A/B   <XXXXXXXXXXXXXXXXXXXXXMIR2933A/B    ------->TEIL     <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxx>smallRNA(s)  ----------->HVH21       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxsmallRNA(i) ---->ZmHOX2a(1)    --------->At4g35610      <xxxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(i)   cctctccgatttcactcaaaatcgctgacgaattccctctccgatttcactcaaaatcgccaacgaatttcctctccgatttcactcaaaatcgccgacg  6573600                                                                           <------ZmHOX2a(2)    <xxxx                                                                          <---------ARR11(3)   <xxxxx                                                                          --------->ARR11(3)  -------                                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <-----------GT1                                                         <---------At4g35610 <xxxxxxx ------->HSFB2a(1)                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ------->HSFC1(2)                                                    xxxxxxxxxxxxxxxx>smallRNA(i) --------HSFC1(2)                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)  <x --------HSFB2a(1)                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                -------- xxxxsmallRNA(s2)                      ------>ZmHOX2a(1)            <---------ARR14(2)   --------->ANAC58 xxxxxsmallRNA(si3)               --------->GLK1(1)                 --------->ARR14(2)   --------->ANAC46 xxxxsmallRNA(s2)                 <xxxxxxxxxxxxxxxxsmallRNA(i)     ===============HOX2a_HOX2a-------- >DEAR3(1)                       ------->TEIL                      <------ZmHOX2a(1)     --------->ANAC58 -->HVH21                       <XXXXXXXXXXXXXXXXXXXXXMIR2933A/B  xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxx >At1g77200                --------->DEAR3(1)   <-----------GT1  <---------TOE1(3)    <xxxxxxxxxxxxxx ---->TEIL          ---------->DOF2<-----------GT1            ----------->HVH21       --------->ANAC46 xxxsmallRNA(i)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <---------ANAC46         xxxxxxxxxxxxxxxx   aattttctctctgagaaaccccaaaatcgcagacgaatttcctctccgataaacctgttcttctgtgaaggattcagatcatttctctacgacgcaaaca  6573700                    <xxxxxxxxxxxxxxxxsmallRNA(s)                    ----------->HVH21        --------->GLK1(1)       <---------ARR11(3)       --------->ARR11(3)   --------->LBD16 ------>ZmHOX2a(2) <---------LBD16   --------->DEAR3(2) xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxsmallRNA(i2) ----->CBF    <---------WOX13(1)               <---------AHL20(2) xxxxxxxxxsmallRNA(s)                  -------->HAHB4      ----------->TGA1                        -- xxxxxxxxxxxxxxxsmallRNA(s)            <---------ICU4      ----------->HVH21               *TSS    xx ->ANAC58    <------------CBF       --------->YAB1       ----------->RAV1(2)          --------->At4g35610 ->ANAC58   --------->ATHB12 <------------MYB.PH3(1)   --------->WOX13(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxsmallRNA(i2)    --------->AHL20(2) ------------>CBF   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxsmallRNA(s2)    --------->DOF5.7(2)  --------->AHL20(2)      --------->YAB1  <---------At4g35610 xxxxxx>smallRNA(se3)    --------->At5g28300  <-----------TBP        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   atccccagagatatcgattgatccgacggtaaccgttttaataatcgattttatagtcaatctgacgctgtttcataacatgttttgcagatggattcag  6573800                                                     <---------ZAT14                                                     --------->ZAT18                                                     <---------ZAT18                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                              --------->GLK1(2)                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                            <------ZmHOX2a(1)<---------ARR14(2)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                        --------->ALFIN1     --------->ARR14(2)                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <---------ANAC58     xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 <---------ANAC58    --------->DAG2<xxxxxxxxxxxxxxxxsmallRNA(s)                 <---------ANAC46   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         ------>ZmHOX2a(1)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------ICU4     --------->ARR14(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------ARR14(2)    --------->GLK1(1)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   --------->ARR14(2)    <---------GLK1(1)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xx --------->GT1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->ZAT14         <---------LBD16       -- xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->YAB1            ---   agagtgaaatccttacattgcctgaacaaatctacagagaaggtgaggaatctattgcactgggaaccgttcaacaatactcggattggaatttagttag  6573900                                                            ------>ZmHOX2a(1)                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            <----------DOF2                         <---------ANAC46          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)         xxxxxxxxxxxxxxxx>smallRNA(i)            <---------MYB52(1)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)       <------ZmHOX2a(1)                       --------->MYB52(2)        xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxx>smallRNA(fl3)                 <-------TEIL<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    xxxxx ------->DAG2                    <---------At4g35610<---------ANAC58   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) ------->DOF2                  <---------HSFB2a(2)  <---------ANAC58xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   taaagtagaggaagctttaggcgagtgtttatttcagaagattagaagttcgtttcttggtcctctagttgaattgggaccaaaaatgaaggctaagaag  6574000                  --------->ARR11(3)                  --------->GLK1(2)            --------->LBD16                 ----------->GT1           <---------HSFB2a(2)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           --------->HSFC1(1)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           <---------HSFC1(1)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           --------->HSFB2a(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          <---------LBD16             --------->ZAT2                                         ------>MYB83     <---------GLK1(2)                --------->At4g35610                                    ------>MYB46(1)     <---------ARR11(3)               <---------ZAT2  ---------->DOF2                        <-------     --------->ARR11(3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                           --------     <---------ARR14(2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      xxxxxxxxxxxxxxxxx     --------->ARR14(2) --------->ZAT6<---------At4g35610   <------ZmHOX2a(2)   ----------->ARR10 <--  --------->YAB1  <---------ARR11(3) ----------->RAV1(1)  <------ZmHOX2a(1)  <---------ZAT6--------->AtMYB61 xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <xxxxxxxxxxxxxxxxsmallRNA(s)  <----------DOF2<---------GLK1(2)--   ggaatcagattttctggaaaaatctttcactatctcatgcagcagagagtgaaaacaaaaggatcaactctttggtttagagttgattctcaacctatcc  6574100                                                                        <---------ANAC46                                                                     <-----------RAV1(1)                                                                     ------->GAMYB                                                                   <---------At5g28300              <                                                                  --------->MYB52(1)        <xxxxxxxx     xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                          <-----------GT1       --------->ANAC58 --ARR14(2)                               <-----------GT1        <---------AHL20(2)     --------->ANAC58 ->ARR14(2)                        ---------->DOF2               --------->AHL20(2) <-----------GT1 - xxxxxx>smallRNA(si3)        --------->ANAC55(2)           --------->TOE2(3)    --------->ATHB12 <--- -------MYB52(1)             <---------ANAC55(2)           --------->TOE1(3)   --------->ICU4  <xxxxx ------->ARR14(2)            ----------->GT1           ---------->DOF2<-----------HVH21 --------->ANAC46   gtttctccttgagagagttctatctcacaacaggtaataaagttttacaatcgtttttaaagcttaattaactgtcgtagaatgatttacaaggcatttg  6574200         <---------ANAC58         <---------ANAC58         <---------ANAC46       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ---------ARR14(2) xxxxxxxxsmallRNA(le3)                      <-----------HVH21 -------->MYB52(1)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             <----------DOF2 ------AtLEC2       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              ---------->DOF2             -- xxxxxxxxxxxxxxxxxsmallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ---------->DOF2-----   cataactgtttgcgtagtttacaatcgtttttaaaacataagtaagtgtcatagataatttacaagggattttaaaagcttttaaaaggggtttacttca  6574300  Previous    Next  AGI:  At2g15140.1    Description:  transposable element gene. pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At1g32840, At4g04010, At2g06430, At2g04980, At2g14130, At3g44500, At2g15190, At3g47260, At5g34900, At3g29210, At2g02210, At3g32900 Range:  from: 6573791    to: 6578465    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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