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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                --------->ARR14(2)
                                                                               <---------HSFB2a(1)
                                                                               --------->KAN4(1)
                                                                               <---------KAN4(1)
                                  <---------YAB1                               --------->GLK1(1)
                                --------->YAB1                                 <----------TaMYB80
                               --------->ICU4                                  --------->HSFB2a(1)
                               <---------YAB1                                  <---------GLK1(1)
                             <---------ICU4                                   ---------->TaMYB80
                             --------->YAB1                          --------->YAB1              <--
                       --------->At5g28300                          <---------YAB1               <--
                      ----------->GT1                     <---------YAB1      <---------KAN4(2) ----
            <---------ANAC46--------->ICU4           <---------ZAT6<---------AHL20(2)           <---
 <-----------GT1     <---------ZAT6            --------->GLK1(2)  --------->YAB1<---------ARR14(2)
 
gttttttccatagttgtgtatttagtggtaaattatgatgaaacagacaaattctagtgttacaatagattataatgttcgaatatccgttgaaatctag  6406300
                         --------->TOE2(3)
                        <---------ANAC55(2)
                        --------->ANAC58
                        --------->ANAC55(1)
                        --------->ANAC55(2)                                             ----------->GT1
                        --------->ANAC58                                               --------->DAG2
      <---------YAB1   <-------TEIL                                                   ---------->DOF2
-------RVE1(1)       <---------ARR14(2)                                       ----------->GT1
-------CCA1(1)       --------->ARR14(2)                                      <---------TOE2(3)     <
----->ARR11(3)  --------->MYB52(1)                                         ---------->DOF2--------->AHL20(2)
------ARR11(3)  ------------>MYB.PH3(1)     ---------->DOF2            <---------------AGL15   -----
 
atatttgatatgatataaaaaacggatacgtaaacttatttgaaaacaaaagaagacactaagaaaactataaacaaataaaggtaacaaaaagtaaata  6406400
                           --------->ANAC55(2)
                           <---------ANAC55(2)
                         <-----------GT1
                     <---------YAB1                                          <-----------GT1
             --------->GLK1(2)--------->ATHB12                           <---------WOX13(1)
   <-------TEIL <----------DOF2                                       --------->ICU4             <--
-------TEIL  --------->ARR11(3)                    ---------->DOF2    <---------YAB1           <----
------>GT1   <---------ARR11(3)           <---------ZAT6<----------DOF2--------->ATHB12   --------->ANAC46
 
gttacattcatttcaaaatcttttgttattacatgtttggaattagagtaacttaaaagctttatagtttatattgattaatacaactcatacacatccc  6406500
                                              <---------AGP1
                                              --------->ARR14(2)
                                              <---------ARR14(2)
                                          <---------At4g35610
                                      <-----------HVH21                                    <--------
                                    >>>>>>>>>>BZIP12       ------>NtERF2                 --------->YAB1
                                    <-------MYC3          --------->DEAR3(1)            <---------YAB1
                                    >>>>>>>>>>ABI5      ------>NtERF2                   --------->ICU4
                                    ------->MYC3       --------->DEAR3(1)             --------->YAB1
          --------->ICU4           <---------O2 ------>ZmHOX2a(2)           --------->ATHB12
        <---------ICU4             --------->TGA1a     --------->DREB2C(2) --------->ICU4<---------ICU4
       <---------YAB1              <---------TGA1a    --------->ORA47(2) --------->bZIP60(1)
       --------->ICU4            ------>NtERF2<---------ARR11(3)         <---------bZIP60(1)
     --------->YAB1             --------->DEAR3(1)  <---------ALFIN1--------->TGA1a   <---------ICU4
    <---------ATHB12         --------->ANAC58 --------->ARR11(3)    <---------TGA1a  <---------YAB1
-------ALFIN1    --------->AHL20(2)--------->O2<------ZmHOX2a(2)    <---------O2     --------->ICU4
-----ALFIN1  <---------YAB1  --------->ANAC58 --------->AGP1        --------->O2----------->GT1
 
acatcccatcataattttgataaaatgaagactcgccaacgtgtcaacagatctagcaccgccaacttctcacatggcatcatgggttattattattata  6406600
                                     --------->LBD16
                                   <---------LBD16-------->HAHB4
                          ------>NtERF2           <---------ICU4
                         --------->bZIP60(1)      --------->YAB1
                         --------->ANAC46        --------->ICU4       --------->AHL20(2)
                         <---------bZIP60(1)   --------->YAB1         <---------AHL20(2)
                         --------->ANAC58   --------->YAB1        --------------->AGL15
                      --------->ANAC46 <----------DOF2            ------>ZmHOX2a(1)        ------>ZmHOX2a(1)
                ------------>CBF ------->TEIL <---------YAB1   ---------->ID1    ------>ZmHOX2a(1)
               --------->TOE2(3) --------->ARR14(2)            <-----------GT1  --------->TOE2(3)
             ------>MYB46(1)     <---------ARR14(2)        <---------DAG2 <---------AHL20(2)     <--
-YAB1        ------>MYB83--------->ANAC58  <---------YAB1  <----------DOF2--------->AHL20(2)  <-----
 
cacacttactaaaaccaacttcaatacgacgccatgtatccgcgttttgataataatgctcactttttcctatttaaataaatccttcattttcctcctt  6406700
                                                                                                 ---
                                                       <---------ICU4                           ----
                                                 --------->ANAC58                          xxxxxxxxx
                                                 --------->ANAC58                ----------->HVH21
                                           --------->ANAC58        <----------DOF2       -----------
         --------->ANAC58                  --------->ANAC58       ------>ZmHOX2a(2)      --------->ARR14(2)
         --------->ANAC58                 --------->DAG2          ==================================
  *TSS------>ZmHOX2a(1)       --------->MYB52(1)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ===============
---------GT1                <---------MYB52(2) ---------->DOF2  --------->ARR11(3)   ------>ZmHOX2a(2)
-----DOF2--------->ANAC46 --------->ZAT6 ---------->DOF2        <---------ARR11(3)  --------->At4g35610
 
ttacatttcctcactcaactctctcattctcactaacagagagaaaaagcaaaagcaaaaatggctcgatctttcgctattgctgtgatctgtatcgtcc  6406800
                                                 --------->ZAT2
       <----------DOF2                      --------->REM1(1)
       <-----------HVH21               ------->GAMYB
     <------NtERF2                     --------->ANAC46
    --------->LBD16                   --------->MYB46(3)
    ------>NtERF2                    -------->P  <---------At4g35610
    <---------ATERF1(1)              ------>MYB83<---------ZAT2
   --------->ATERF1(2)              --------->MYB52(1)           --------->MYB46(3)
   <---------ATERF1(2)              --------->MYB55(1)    ------>MYB46(1)                       ----
   --------->DEAR3(1)              <---------MYB55(2)     ------>MYB83                <---------ALFIN1
   <---------DEAR3(1)              --------->MYB46(3)     -------->P             --------->RAP2.6(2)
  <---------LBD16                  <---------MYB111(1)  --------->MYB46(3)     --------->At4g35610
  --------->ATERF1(1)              <---------MYB46(2)   --------->AtMYB61      --------->ZAT2------>ZmHOX2a(1)
--------->DEAR3(1)             --------->MYB46(3)--------->At4g35610          ----------->RAV1(1)<--
------->CDC5            ------>NtERF2------>MYB46(1)    <---------MYB111(2)   --------->ANAC46======
-->ZmHOX2a(1)      <---------ZAT2  <---------MYB111(2)  <---------MYB55(2)    ======================
xxxxxxx>smallRNA(s)--------->ZAT2  <---------ALFIN1     <---------MYB111(1)=========================
---------->WRI1   --------->ANAC58 --------->DEAR3(1)   <---------ALFIN1   ----------->RAV1(1)------
===HOX2a_HOX2a    --------->ANAC58 --------->AtMYB61   --------->MYB46(3) <---------ALFIN1  <-------
===HOX2a_HOX2a --------->WRKY18(1)--------->MYB46(3) <---------ALFIN1   ------>ZmHOX2a(1) ------>ZmHOX2a(1)
 
tcatcgccggcgttactggtcaagctccgacttcaccaccaaccgctacaccagctccaccaactccaacaactcctccaccagcagcaactcctcctcc  6406900
           ----------->RAV1(1)                                        <---------ALFIN1
       <---------ALFIN1                                              --------->MYB46(3)
       --------->DEAR3(1)                                          --------->AtMYB61
       --------->AtMYB61                                           --------->DEAR3(1)
      --------->MYB46(3)                                        --------->ANAC46
   --------->At4g35610 --------->ARR11(3)                     xxxxxxxxxxxxxxxx>smallRNA(s)
   <---------At4g35610 <---------ARR11(3)               --------->ANAC58
-->ZmHOX2a(1)    --------->YAB1                         --------->ANAC58
---------HVH21 <-----------HVH21         <---------ALFIN1    <---------ARR14(2)
=======================RAV               --------->AtMYB61   --------->ARR14(2)             ------>ZmHOX2a(1)
======RAV --------->AtMYB61             --------->MYB46(3)  --------->GLK1(1)             ----------
======RAV <---------ALFIN1          <-----------HVH21------>ZmHOX2a(1)--------->AtMYB61  ------>ZmHOX2a(1)
----->RAV1(2) --------->ANAC46  ------>ZmHOX2a(1) ------>ZmHOX2a(1)<---------ALFIN1     <---------ALFIN1
--ALFIN1 --------->MYB46(3)  ------>ZmHOX2a(1)   <---------ALFIN1 --------->MYB46(3)  ------>ZmHOX2a(1)
 
tgtctcagcaccaccaccagtcacaacatctcctcctccagtcaccactgctcctcctccagcaaatccaccaccaccagtctcttctcctcctcctgct  6407000
                                                                            <---------TGA1a
                                                                            <---------O2
                                                                            --------->O2
                                                             --------->ANAC58
        --------->At4g35610                     <---------ANAC58            --------->TGA1a     ----
        <---------At4g35610                     <---------ANAC58            --------->ANAC46    <---
       --------->ANAC46                      <---------MYB52(1)   <---------ALFIN1             <----
       --------->ANAC58                     ==========================================MYC_MYB  -----
       --------->ANAC58                     <-------GAMYB    --------->ANAC46                  <----
      --------->MYB46(3)                ------>ZmHOX2a(1)    --------->ANAC58       <---------ALFIN1
   <---------ALFIN1                    <---------ALFIN1   ----------->RAV1(1)<-----------HVH21 -----
 ------>ZmHOX2a(1) ------>ZmHOX2a(1) ------>ZmHOX2a(1)   <---------ALFIN1------>ZmHOX2a(1)   <------
--------->ANAC46------>ZmHOX2a(1)   <---------ALFIN1   ------>ZmHOX2a(1)<---------ALFIN1    --------
->RAV1(2)   <---------ALFIN1      ------>ZmHOX2a(1)   --------->ANAC46------>ZmHOX2a(1) ------>ZmHOX2a(1)
 
tctcctccaccagctactcctcctccagtcgcttctcctcctcctcccgttgcttctcctccaccagcaactcctcctcccgtcgctactcctcccccag  6407100
                                                      --------->GLK1(2)
                                        ------>MYB83 <---------GLK1(2)
                                        ------>MYB46(1)
                                       --------->ORA47(1)
                                      --------->MYB46(3)
                                      <---------MYB46(2)
                                      <---------MYB55(2)
                                      <---------MYB111(1)
                                      ----------->HVH21
     <---------ANAC58                 --------->DEAR3(1)
     <---------ANAC58                 --------->DREB2C(2)
------>ZmHOX2a(1)                     --------->DEAR4(1)
----->ARR14(2)                       --------->DEAR3(2) <-----------GT1
------ARR14(2)                     <---------ALFIN1  --------->ARR14(2)               <---------ALFIN1
-----At4g35610              --------->ZAT2           <---------ARR14(2)            <---------ALFIN1
---->At4g35610              <---------At4g35610--------->ANAC58          <---------MYB52(1)        -
-----ZAT2                   <---------ZAT2  --------->ANAC46            <-----------HVH21        ---
---->ZAT2      ------>ZmHOX2a(1)  --------->ZAT2   ----------->ARR10    <-----------TGA1         ---
---ALFIN1    ----------->RAV1(2)  <---------ZAT2xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------ZAT18---
->LBD16    <---------ALFIN1 --------->At4g35610--------->ANAC58        --------->ANAC46        -----
 
ctcctctagcttcccctcctgctcaagttccagctccagcaccgaccacgaagccagattctccatctccatctccgtcatctagcccacctcttccatc  6407200
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AGI:  At2g14890.1   
Description:  AGP9 (ARABINOGALACTAN PROTEIN 9). Identical to Classical arabinogalactan protein 9 precursor (AGP9) [Arabidopsis Thaliana] (GB:Q9C5S0;GB:O82327); contains InterPro domain Glutelin; (InterPro:IPR000480)
Range:  from: 6406703    to: 6408141    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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