Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    --------->WOX13(1)                                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                <------NtERF2                                                              <---------ANAC46                                                              <---------ANAC58                                                              <---------ANAC58                                                              --------->bZIP60(1)                   <                                                      <----------DOF2                               <  <---------ANAC58                                    ------>ZmHOX2a(1)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------ANAC46                                  =================================================  <---------ANAC58       --------->HSFB2a(2)        <-----------------AGL3--------->WOX13(1)        < >ZmHOX2a(2)         <----------DOF2            --------->LBD16<-----------HVH21               <----- --TEIL             ------>ZmHOX2a(2)          --------->ANAC46<-----------TGA1                <----- ->ARR14(2)       <---------ARR11(3)          <---------LBD16 <---------bZIP60(1)     <----------DOF2 --ARR14(2)       --------->ARR11(3)      <----------DOF2    ---------->ID1  <---------ICU4    <-----   attttcgtatgtcgaattttgatctttctcgacttatcgaaaggcttttccgcatccttttttggcgtcattcaatccatcatctcgtctttgagttgtg  5831000                                           <---------RAP2.6(3)                             <---------ARR11(3)               ------>MYB46(1)                             --------->ARR11(3)               ------>MYB83                             --------->ARR14(2)               -------->P                             <---------ARR14(2)              ------>ZmHOX2a(1)                  --------->ARR11(3)      --------------->AGL15                  <---------ARR11(3)     <-----------------AGL1         <XXXXXXXXXXXXXXXXXXXXXXXMIR829.1                  --------->ARR14(2)     <-----------------------TaNAC69(2)                  <---------ARR14(2)     <-----------------AGL3       --------->YAB1 ---------ANAC46 --------->GLK1(1)       <-----------------AGL2      <------ZmHOX2a(2)     --------->ZAT18 ---------ANAC58<---------KAN4(2)        <-----------------AG===============HOX2a_HOX2a    <---------ZAT18 =========================================================MADS_MADS --------->ARR11(3)     <---------ZAT14 ---------ANAC58---------->TaMYB80       ----------------->AGL1    <------ZmHOX2a(1)     <---------ZAT18 ----ANAC58 --------->HSFB2a(2)         <xxxxxxxxxxxxxxxxsmallRNA(i)<---------ARR11(3)   <---------ZAT14 ----ANAC58 <---------HSFB2a(2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <XXXXXXXXXXXXXXXXXXXXMIR845A ----ANAC46 --------->HSFC1(1)--------->HSFB2a(1)     --------->AHL20(2)<---------CCA1(2)--------->ZAT14   tgtcgtctctatttcgagaatatccactacaaatcttccaagtgccgaaattgggattaattcctaccaggatcatatcatgtggtatcagagcacactt  5831100                                                     <---------ANAC58                                                     --------->ALFIN1                                                   <---------ANAC58                                                   <---------ANAC58                                                 <---------ANAC46                                                 <------MYB46(1)                                                 <------MYB83                                                 <---------ANAC58                                            --------->AHL20(2)                                            --------->ATHB51                                            <---------ICU4                                            <---------AHL20(2)                                            --------->ATHB12                                           --------->ICU4                                           <---------YAB1       ----------->GT1                                         <--------HAHB4 ----------->GT1                                         <---------ICU4 --------->At4g35610                                        --------->ICU4--------->ZAT18                                        <---------YAB1<---------ZAT18                                      --------->YAB1 <---------ANAC58                                     <---------YAB1<---------ANAC46          <-----------HVH21                               <---------AHL20(2)<---------ANAC58      <---------ATHB12    ----------   ggagattgagtcgtttctgtctgtcatcttgttttaattttcataattatttggtgtgtgctaaaactgtgaaatcaattgtcaagggttcgaaaaagag  5831200                                     --------->ATHB12                     <---------HSFC1(1)                   --------->SPL7                     <---------HSFB2a(2)               <---------ANAC58             <---------TOE2(3)                     --------->HSFC1(1)                <---------ANAC58        --------->ATHB12                     --------->HSFB2a(2)               <---------ANAC46       <---------YAB1 >DOF2 ----------->GT1  <---------GLK1(2)----------->GT1<---------SPL7        --------->ICU4---------   tctagtattttgtaaaattgtttctagaatttttggaaacgattggataattttgtagcgtccgattaagtcaaacagtcgtgattagggttctacgaga  5831300                                                            --------->ARR11(3)                                                            <---------ARR11(3)                                                        ---------->DOF2                                                     <---------YAB1                               ---                              <-------GAMYB ------>ZmHOX2a(1)                                  ------                <-----------TGA1  <---------ANAC46   ----------->TBP                <----------DOF2-- <---------ANAC46            --------->MYB52(2)    --------->YAB1        <---------ANAC46      ------ >ANAC46  <---------REM1(1)  <---------MYB46(3)   <---------YAB1     <---------ANAC46          <-----   gttttgtgtaagttgaagcgtcattttgtgtttgttgtgttgaatcctttctattataaaaagaacttgttactggtgtatttgtgctttgtttctcagg  5831400                                      ----------->RAV1(1)                               <---------ALFIN1                               --------->MYB46(3)                          --------->ANAC46                          --------->ANAC58      *TSS                --------->ANAC58  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------>RAP2.6(2)      <------ZmHOX2a(2)--------->MYB46(3) --->O2               --------->ARR11(3)<---------MYB52(2)      --------->ZAT6             --------->MYB46(3) ---------->CBF  <------ZmHOX2a(1) ------->GAMYB         --------->ARR11(3)             --------->MYB46(3) --->ZAT2        =============HOX2a_HOX2a                <---------ARR11(3)     --------->ARR14(2) ----O2  --------->MYB46(3)  --------->RAP2.6(2)         <-----------ARR10      <---------ARR14(2)  <   tcgcaatgtcaacaactgaggagagatcaagccacaactgcaacaagcgtctaattgaagctcttaccactgaaatggagcaaattttcgacaaccactt  5831500                                                                                                  ---                                                                                               ------                                                                                               <-----                                                                                              -------                                                                                            <--------                                                                  --------->LBD16           ---------                                                                  ----------->HVH21         ---------                                        <----------ID1          <------NtERF2               ---------                                 --------->DAG2                --------->MYB52(1)        <xxxxxxxxxxx                                ---------->DOF2            --------->ANAC58       ===================        <-----------HVH21   --------->ANAC58               --------->ANAC58       <------ZmHOX2a(2)      <-------TEIL          <----------ID1                 --------->ANAC46      <---------ARR11(3) ------ZmHOX2a(2)           --------->ANAC58 ---------->DOF2   ------>NtERF2     --------->ARR11(3)   agatcaaattcgtcaagggcatcacagagaacgaaaaaggaaggaacaaaagcttaagtctaagccaccggacaacttactgagatcaacacagagcagc  5831600     <---------HSFC1(2)     <---------HSFB2a(1)     --------->HSFB2a(1)     --------->HSFC1(2) -------->RAV1(1) --->At4g35610                                                         <---------AHL20(2) ----At4g35610                                                     <---------DAG2 -->DEAR3(1)                                             ------>MYB46(1) -At4g35610   --------->ZAT6 --------->GLK1(2)           ------>MYB83  --------->AHL20(2) >At4g35610   <---------ALFIN1                        --------->DEAR3(2)<---------AHL20(2) >ZAT2--------->KAN4(2)--------->ARR14(2)           <-----------GT1<----------DOF2  ---------->DOF2 >ZAT14    ------>ZmHOX2a(1) <---------ARR14(2) --------->YAB1   ------->TEIL     <------ZmHOX2a(1) xxxxxsmallRNA(s)      <---------ARR14(2)   <---------YAB1     --------->ZAT18   --------->LBD16----- =================HOX2a_HOX2a--------->ARR14(2)<---------YAB1  <---------ZAT18 <---------LBD16 ------   ccacagaaaattcctcacactcccaaatccaaatctgtgtttcattctgattataaaccgactaatgcactttttaaattttcaggaaaagaagattacc  5831700                                                                                         <---------At4g35610                                                                                         --------->GLK1(1)                                                                                    =================                                                                                    --------->ANAC46                                                                                    =================                                                                                    <---------TGA1a                                                                                  --------->MYB52(1)                                                                                 ----------->HVH21                                                                                --------->AtMYB61                                                                                <-----------HVH21                                                                               --------->At4g35610                                                                               --------->O2                                                                               <---------At4g35610                                                                               --------->ANAC46                                                                               --------->TGA1a                                                                               ======================                                                                    <---------ZAT14 <---------O2                                                        ----------->ARR10      --------->bZIP60(2)                                                    <---------At4g35610       ------>NtERF2  <-------                                                    --------->At4g35610      <---------ALFIN1<-------  --------->ALFIN1                             <---------ANAC46     --------->ZAT14 --------->O2 ---------->AGL15       <---------MYB46(3)     <---------ANAC58     <---------ZAT18 --------->TGA1a ----------->AG        <---------AtMYB61       <---------ANAC58     --------->ZAT18<---------LBD16   tagagtgggagaaaaacatggacgagtggtttccctacaaaaacttcttgagtgagatgagatttgtttgtgcacttagccacctcacgggagatgctta  5831800                                                                   ========================HOX2a_HOX2a                                             ------>NtERF2         ------>ZmHOX2a(2)           <---------HSFB2a(2)              <---------ALFIN1      =========================HOX2a_HOX2a       <--------P                       ==================================HOX2a_HOX2a      <-------GAMYB                     <------ZmHOX2a(1)         <------ZmHOX2a(2)     <---------MYB46(3)           --------->YAB1 ------>MYB83    --------->AGP1     --------->MYB55(2)          <---------YAB1  ------>MYB46(1) --------->ARR11(3)    <---------AtMYB61      <---------ANAC46--------->ATERF1(1)   <---------ARR11(3) ===============MYC_MYB  ------>ZmHOX2a(2)<---------ATERF1(1)   <---------GLK1(1) =============MYC_MYB    ======================HOX2a_HOX2a      --------->GLK1(1)      --------->ICU4 =============MYC_MYB<---------YAB1<---------AHL20(2)          ----------->ARR10  <---------TOE1(3) --ANAC58  --------->HSFB2a(2)   <---------AHL20(2)   <----------DOF2             <---------TOE2(3)<- --ANAC58  <xxxxxxxxxxxxxxxxsmallRNA(i) =================================HOX2a_HOX2a<------ZmHOX2a(1)   caaatggtggttgctagaagttgatgatcgcttatattataaggagccacctatcactttgtggagagatcttaagaaactgctaaggaataagtatgct  5831900  Previous    Next  AGI:  At2g13890.1    Description:  transposable element gene. pseudogene, zinc knuckle (CCHC type) protein family, contains Pfam domain, PF00098: Zinc knuckle Range:  from: 5831406    to: 5834894    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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