Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               ----------->GT1                                                  ----------->GT1                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                        xxxxxxxxxxxxxxxxxx>smallRNA(le3)  --------->ARR14(2)                  <-----------GT1   <-----------RAV1(1)  ---------->DOF2  <---------ARR14(2)              --------->YAB1   <xxxxxxxxxxxxxxxxsmallRNA(i) ----------->GT1    <---------RVE1(1)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           <---------ARR11(3)      <--    <---------CCA1(1)      ---------->DOF2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                  ---   --------->ARR11(3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    --------->ICU4  <---------CCA1(2)<-   <---------ARR11(3)   --------->AHL20(2) ---------->DOF2--------->DAG2  --------->GLK1(2)       ---  --------->YAB1--------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->ARR11(3)      <--   gaaatgatatttttaaaaataaacaatataaaagggtattgttgcaaaagagtagtaaaaaaagggtaattttgaaaatctcccatatttttgacccaaa  5748500                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                            <--------                                                                                            ---------                                                                              <---------AHL20(2)  <--                                                                   -------->ATHB1        <---------ICU4                                    <---------ICU4                 --------->ATHB51      --------->YAB1                                <---------YAB1                     <---------ICU4     --------->YAB1          --------->ATHB12    --------->YAB1                      --------->AHL20(2)<---------YAB1<--     ---------->DOF2         <---------YAB1                       --------->ICU4 --------->ICU4<----- -------AHL20(1)            --------->AHL20(1)      <---------AHL20(2)        --------->AHL20(2)  --- ------>AHL20(1)            --------->AHL20(2)     --------->AHL20(1)       --------->YAB1  --------- --------AHL20(2)          <---------ICU4          <---------AHL20(1)<---------YAB1 --------->AHL20(2) ------>AHL20(2)          --------->ICU4        <---------AHL20(2)<---------AHL20(2)<---------AHL20(2) -------AHL20(2)       --------->AHL20(2)       --------->AHL20(2)<---------ATHB51 --------->TOE2(3)   tttattcaaaagtgattagatacctataaatattataaatatcacaaaatttatatattttgacacaaattattacaaatataaatattaataataatat  5748600         <---------AHL20(2)         --------->AHL20(2)    <---------TOE2(3)   <---------AHL20(2)   --------->AHL20(2)   --------->YAB1 <---------YAB1 ----ARR11(3) --->ARR11(3) ----AHL20(2) --->AHL20(2) --->AHL20(1) -AHL20(2)                    --------->GLK1(1) >AHL20(2)                    <---------GLK1(1) -------AHL20(2)     <---------------AtSPL8 -------YAB1       <---------ARR14(2)                         <XXXXXXXXXXXXXXXXXXXXMIR832-3P ----AHL20(1)      --------->ARR14(2)         --------->ARR14(2)   <---------ARR14(2) ------>AHL20(2)<---------ANAC46    <---------MYB52(1)     <---------AHL20(2)                       < >YAB1<---------ICU4 <---------------AtSPL3   <---------ARR14(2)   --------->ARR14(2)               <   attattaatatttatattgtggatatgtacagaaacccgttggaatcggatttgggtttattttttttggatttggaataaaactgggtattttgaaaat  5748700                                             <------MYB83                                             <---------ANAC58                                             <---------ANAC58                                             <------MYB46(1)                                           <---------ANAC46                                         <-------GAMYB                            <---------GLK1(2)<---------ANAC46                            <---------ARR14(2)              <-----------RAV1(2)       --------->ALFIN1                                  <---------ICU4             <------ZmHOX2a(2)    <---------ARR14(2)                    --------------->AtSPL8          <------MYB83--------->ATHB12  <---------MYB46(3)             <---------ANAC46   --------->YAB1          <------MYB46(1)   --------->ARR14(2)                       --------->YAB1      --------->ICU4        <--------P    --------->ATHB51<---------ANAC46              <---------ATHB12--------->ANAC46   <-------TEIL      --------->ICU4 ------>ZmHOX2a(2)               --------->ICU4  --------->ANAC58 ---------ANAC58     <---------YAB1<------ZmHOX2a(2)           --------->ANAC58     --------->ANAC58 ---------ANAC58----------->GT1   --------->ARR14(2)           --------->ANAC58  ------>ZmHOX2a(1)<--   ttgggttcgggttggatcaggttattattggattcggatcgggtgttgggtttggatattatgcccagcaatggtgagtactcctctcgccatcatcagt  5748800                                                   --------->WOX13(1)                                                 ------------>CBF                                                 <---------YAB1                                               --------->YAB1                                              <------ZmHOX2a(2)                                     <                                             <---------ARR11(3)                           --------->HSFB2a(2)                                        <---------WRKY12             <---------DAG2       <---------HSFB2a(2)                                        <---------WRKY38(1)          <----------DOF2  <---------ANAC46                                      <---------TCP11(2)        <-------TEIL <---------LBD16  <------                                      <---------TCP16(1)       --------->ARR14(1)     <---------ANAC58                                      --------->PCF2          <---------GLK1(2)--------->LBD16------- --------DOF2          <----------DOF2<---------PCF5          --------->ARR11(1)      <---------ANAC58   ctttactctgttccaagtcttccttctttggctcaaatggggtccacgatcatcaatccaaatagattcgactttttgttctggggtttcgtcgagaatt  5748900                                                                                       <---------At4g35610                                                                                      <---------DOF5.7(2)                                       --------->ANAC55(2)                            --------->MYB52(1)                          <---------WRKY38(1)                                        <---------WRKY12                          <---------WRKY12                                           <---------WRKY38(1)                         <<<<<<<<<<WRKY26                                            <---------WRKY45                         <<<<<<<<<<WRKY43            --------->MYB46(3)             --------->DOF5.7(2)           <---------ANAC58            <---------ANAC55(2)                <---------MYB52(1)       --  *TSS     <---------ANAC58         <---------ARR14(2)                  <---------ANAC58          --- ----------DOF2          <<<<<<<<<<WRKY38      ---------->DOF2          <---------ANAC46  --------->At4g35610 ---ARR14(2)            <-----------HVH21--------->ANAC46               <---------ANAC58--------->MYB46(3) -->ARR14(2)<----------DOF2         --------->ARR14(2)           <----------DOF2   <-----------HVH21   cgatttttgggtttctttcgaaacttggtcaaatgtcgaatacgcgttacaaagaacaaacctttctctttatttcgtttgtcttcgtcaacggctgaat  5749000                                          <----------DOF2                                         <---------ANAC58                                         <---------ANAC58                                    <---------ICU4                                                  <                                   <---------YAB1                                                   <                                   --------->ICU4                                   =================            --------->LBD16        <---------ATHB51                                 <------ZmHOX2a(2)        --------->PCF5           <---------ICU4                                    --------->ARR11(3)   ------>MYB83               --------->YAB1  <---------ANAC58                     <---------ARR11(3)   ------>MYB46(1)--------->AHL20(2)--------->YAB1      --------->At4g35610       --------->YAB1   -- ------->GAMYB    <---------AHL20(2)-------->HAHB4      <---------At4g35610    ---------->DOF2 <----- ------>P  <---------LBD16--------->TOE2(3)   <---------ANAC58             <----------ID1  <--------- ------>WOX13(1) --------->ICU4  --------->YAB1<----------DOF2           <---------------AtSPL8<-----   caaccaaatggtccctggaattaataaacctctaataataatggctttgcttttactctgatgacaagttcaaaaatggaacaaagatcactcctttgct  5749100       <---------At4g35610    <---------At4g35610                                 <-------TEIL ----------DOF2                                        --------->ARR14(2) ---------DAG2                                       --------->HSFC1(2) ==================HOX2a_HOX2a                       --------->HSFB2a(1) ------->TOE2(3)         <-----------GT1             <---------HSFC1(2) ----ANAC58        <---------AHL20(2)               <---------TOE1(3)<---------At4g35610      <------ -DOF2 --------->At4g35610                 --------->ARR14(2) <---------DAG2      ---------->DOF2 <-- ----ANAC58 ------>ZmHOX2a(1)              <---------ARR14(2) <----------DOF2--------->YAB1   <------   tcctttatctgctcctactattcaatttcactctcagagtcgctggaaacgctgaaggttcttcctttttctgctactctcatgaaaagtcccttccttt  5749200      <-------GAMYB     <---------MYB46(3)     --------->MYB111(1)                                                                 <---------ZAT2     --------->MYB111(2)                                                                 <---------At4g35610     --------->MYB55(2)                                                                  --------->ZAT2    <--------P                                                                  <----------DOF2   <-------GAMYB                                                          --------->ALFIN1  --------->MYB55(2)                                                  <-----------RAV1(2)--------->At4g35610  <---------MYB46(3)                                      <---------YAB1<---------At4g35610 <---------AtMYB61           <---------DAG2      <---------ANAC46  --------->ZAT14     <-----------RAV1(2) ---DAG2                     <----------DOF2 <---------ANAC58      <---------ZAT14--------->WRKY38(1) -------AtMYB61       <-------TEIL           <---------ANAC58------->TEIL ----------->HVH21 ----DOF2        ---------->DOF2            <---------At4g35610    --------->ZAT18--------->WRKY45   ttggtggttgttagatttcgaaagttcataactttttttgtttgtttgctggtttggattatgaatatgtgtacaggtgatgctttgactcagctgaaaa  5749300                           --------------->AtSPL8                       --------->ANAC58                       --------->ANAC58             --------->WRKY38(1)             ----------->HVH21                                                                -------           <---------At4g35610          --------->TOE1(2)                                     ------>ZmHOX2a(1)           --------->At4g35610         <---------ZAT2                                        --------           --------->ANAC55(2)         --------->ZAT2                               <---------ANAC58           <---------ANAC55(2) ------->TEIL                                         <---------ANAC58         <-----------RAV1(2) --------->ZAT14                        ------->TEIL    <---------ANAC46 <---------MYB52(1)--------->AtLEC2 ---------->DOF2       <-----------GT1          --------->MYB52(2)   acagtttgtcatcaggtgaccctgcaaacaatgtactccaaagctgggatgctactcttgttactccatgtacttggtttcatgttacttgcaatcctga  5749400  Previous    Next  AGI:  At2g13790.1    Description:  ATSERK4 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 4); protein binding / protein kinase/ transmembrane receptor protein serine/threonine kinase. similar to SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT1G71830.1); similar to BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE), kinase [Arabidopsis thaliana] (TAIR:AT4G33430.1); similar to ATSERK5 (SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5), ATP binding / protein kinase/ transmembrane receptor protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT2G13800.1); similar to somatic embryogenesis receptor-like kinase 1 [Solanum tuberosum] (GB:ABO14172.1); Range:  from: 5748902    to: 5753875    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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