Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 ------                        --------->At4g35610                   --------->ANAC58     <---------ARR14(2)                        <---------ZAT2                        --------->ANAC58     --------->ARR14(2)                        <---------At4g35610              --------->At4g35610      <---------CCA1(2)                   <---------LBD16                       <---------At4g35610    <---------ANAC58    <                  --------->ALFIN1               --------->ARR14(3)             <---------ANAC58    -                --------->At4g35610              <---------GLK1(2)       ---------->ID1   <<<<<<<ZML2                <---------ZAT2                   <---------ARR14(3) <---------ARR14(2) ------>ZmHOX2a(1)            <---------KAN4(2)                    --------->ARR11(3) --------->ARR14(2) <---------HSFB2a(2)   -------->P   --------->ZAT2                   <---------ARR11(3) <---------ARR11(3) --------->HSFB2a(2)   aaacttaccaagagaataagctggggagctaagaagaatttcaaaattcaagattttgtagctctcgcaagatttgttgttttcgtatcctagaacataa  5425800                                          --------->MYB46(3)                                         --------->ANAC58                                         --------->ANAC58                                       <---------WRKY12                                       <---------WRKY45                                       <---------WRKY38(1)                                      --------->WRKY18(1)                                      <<<<<<<<<<WRKY11         --------->KAN4(2)            <<<<<<<<<<WRKY6        --------->HSFB2a(1)          <-----------HVH21        <---------HSFB2a(1)   <---------ALFIN1      =============================HOX2a_HOX2a      <------ZmHOX2a(1)      ------>ZmHOX2a(2)        --------->AtMYB61                             -      ==============================HOX2a_HOX2a      --------->MYB46(3)                       -------  ---------->DOF2            --------->MYB46(3)    <-----------GT1                            <------  <---------DOF5.7(2)       <------ZmHOX2a(2)  --------->YAB1                   <---------ARR11(3) <- --->MYB52(1)              <---------ARR14(2) <---------ATHB12                  <-----------ARR10<--- ---------MYB52(1)         --------->ARR14(2) <---------ATHB51                  --------->ARR11(3)<-- -------->DOF5.7(2)   <---------MYB52(1)--------->WOX13(1)                 ---------->DOF2   <-------   ccgttaaaggacattcgattatcggtttggatccaccctggtcaaccaataataaaccatcgcagtgagagataatacaaagtatcttattatgttctgg  5425900          <---------TOE2(3)       <---------MYB52(1)      --------->TOE1(3)      --------->TOE2(3)    <---------TOE2(3)    <---------TOE1(3)   <---------DOF5.7(2) --------->DOF5.7(2) -------->TOE2(3) -->HSFB2a(2) ---HSFB2a(2) -------HAHB4 ------ARR11(3)                        ---------->DOF2                       <---------At4g35610 ----ZmHOX2a(2)                      <------ZmHOX2a(2)                       --------->At4g35610 --LBD16  <---------TOE1(3)  <---------ATHB12     <---------YAB1   <---------TOE2(3)            <----   atcattaacgttaagtttaacttggaccccaatggatggatcaaagctgtttttgattccatagagattaatgctatgcatcagactattcatctttgta  5426000                                                                         ------>ZmHOX2a(2)                                                                        <---------GLK1(1)                               <-------TEIL                             --------->GLK1(1)                             ------->MYC3                              <---------AGP1                             <-------MYC3                              <---------ARR11(3)                         <------ZmHOX2a(2)                      <---------ARR11(1)                        <-----------HVH21    --------->ANAC46   --------->GLK1(2)                       ------->GAMYB     <---------DAG2         ------->TEIL     ---------->DOF2                      --------->MYB46(3) <----------DOF2        <---------ARR14(2)               <------ZmHOX2a(2)    <---------At4g35610         --------->ARR14(2)              --------->ARR11(3)<---------ANAC58   --------->ARR11(3)  --------->ARR11(3) -------GT1   <---------ARR11(3)<---------ANAC58   <---------ARR11(3) <---------CCA1(2)            <-   actgaataacctccaagatcatcaacgatcacatgcgttgctgctttacccaagttcttcttgacgaatcttggatctctaaataaagagtaccatcgtt  5426100                              <---------ANAC46                          <-------MYC3                                                <------------CBF                          ------->MYC3                                               <---------ICU4                         --------->ALFIN1                                            --------->ATHB12                         <---------TGA1a                                             *TSS                         <---------O2                                             --------->YAB1                         <-----------RAV1(1)           --------->GLK1(2)  <------ZmHOX2a(2)                         --------->O2                 <---------GLK1(2)  --------->ARR11(3)                <----------DOF2                   <-----------GT1        <---------ARR11(3)     <---- --------AtLEC2 ===================bZIP_DOF     <---------GLK1(1)  --------->ALFIN1 <---------YAB1   tgcaagtagtttgcaattcttttagacatgtggctcgaaccctagagagtatttccgattctaaatcaagtggaagatcatcaaacatcattgtttgttt  5426200                                  ---------->DOF2                              <------ZmHOX2a(1)                            <---------TOE1(2)                           --------->HSFB2a(2)                --------->At4g35610         <---------GLK1(1) ------>ZmHOX2a(1)       <---------ICU4      <---------HSFB2a(2)                                           <---------O2       --------->ATHB12   --------->TOE1(2)                                              <---------TGA1a      <---------YAB1    ------>MYB83                  --------->TOE2(3)    ----------->GT1      --------->ICU4    ------>MYB46(1)    <---------ZAT14    <---------TOE2(3)       <----------ID1-    --------->YAB1    <---------MYB59   ------------>CBF--------->AHL20(2) <------MYB83--------->CCA1(2)   <---------YAB1 ----------->HVH21    ----------->RAV1(1)    <---------TOE1(3)----------->TBP     <- -----CCA1(2)   ----------->RAV1(2)   <----------ID1 --------->YAB1        <------MYB46(1)     ------   atcttatgatgatttctcgtctgaccttcctaggaagaaagcgacaatactgcaaacataaattagggtttagaagttggtataaatagagacgagagtg  5426300                                                                                                   <-                         --------->ANAC58                                                          --                      <---------ZAT14                                                              <-                      --------->ZAT14--------->ANAC58                                     <---------AHL20(2)       --------->WOX13(1)--------->ANAC58                                           ----------->RAV1(1) -------->YAB1        --------->ZAT18--------->ANAC58                           --------->ANAC46   -- --------YAB1         <---------ZAT18--------->ANAC46     ----------->GT1   <----------DOF2       --- ----->GT1--------->YAB1 --------->ANAC46           <---------ICU4         --------->TOE2(3)      <--   tataatagtcaattagtataagactgcacgcatagttgcaagcaaacttgttgatcaatactgaaaaattgtgttttcctttactccaccatattatttg  5426400                               <----------DOF2                              <---------ANAC58                              <---------ANAC46                              <---------ANAC58                                                  -----    <---------ANAC58      <---------ANAC46                                                     <-----    <---------ANAC58      <---------ANAC58                           ----------->GT1           ------    <---------ANAC46      <---------ANAC58                         <---------ANAC58           <------ ---------TaMYB80        --------->MYB52(2)                        <---------ANAC58           ------- ------->CCA1(2)         <---------MYB46(3)           <---------ANAC46                        ------- --------GLK1(1)     --------->O2        <---------ANAC58      <---------ANAC58               <------ ------->GLK1(1)     --------->ANAC46    <---------ANAC58      <---------ANAC58               ------- ------>ARR14(2)     <---------O2  <---------TOE1(3)  <---------ANAC58                       <------- -------ARR14(2)   <-----------GT1 <---------TOE2(3)  <---------ANAC58                       --------   gatatgccttggatttgagtttcacgttgcttgcgttaaggcttcttgccaagtttgcgtctagtccgtgcctgtaaaacatcacacacacagagagatc  5426500  ---------->DOF2 ------------>AGL3 -ZmHOX2a(2)                                                           ----------->HVH21 --->CCA1(2)                                                          <---------WOX13(1) ---ARR14(2)                                                         <---------ANAC58   ------>ZmHOX2a(1) -->AGP1 --------->GLK1(1)                                     --------->ATHB12 --------->ZAT6 -->ARR14(2)                                                <----------DOF2    --------->ZAT18 ---ARR11(3)                                             --------->ARR11(3) --------->ANAC58 -->ARR11(3)       --------->LBD16                    --------->DAG2 <---------ANAC58  --------->TOE2(3) --GLK1(1)        --------->ANAC46                   ---------->DOF2 <---------AtLEC2<---------YAB1 ->GLK1(1)     -------->P                   <-------TEIL <---------ARR11(3) --------->ANAC58      <--   cagttaaagagaattctaacccgagaccatatacaacaacgatatatacatatcaaaaagctctttgatttgcttgacaagaacactatccttatgtgct  5426600                                     --------->ZAT14                                     <---------ZAT14                                  <---------At4g35610                              <---------HSFB2a(2)                --------->TOE2(3)   --------->YAB1             --------->HSFB2a(2)                >>>>>>>>>RAP2.2                  <--   <---------ICU4            <---------LBD16            --------->At4g35610             ----------->GT1  <---------ATHB12          <---------LBD16           --------->YAB1                   --------->MYB59 ------->TEIL   <---------TOE2(2)--------->ARR14(2)  <---------ATHB12       <---------------AGL15<--- -------YAB1    <---------TOE1(2)<---------ARR14(2)--------->WOX13(1)       --------------->AGL15----   atgaatcatgaagtctcatatgttttaatcttcgggaactgctctgtttttctcaatcagcatccaatctaaacagaacttatttgagtaaggtcataag  5426700  Previous    Next  AGI:  At2g13128.1    Description:  pseudogene, expressed protein Range:  from: 5425322    to: 5426185    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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