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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                 <xxxxxxxxxxxxxxxxxx
                                                                               <---------PCF5
                                                  ------>ZmHOX2a(2)            <xxxxxxxxxxxxxxxxxxxx
                                                <---------ARR11(3)             <xxxxxxxxxxxxxxxxxxxx
                                                <---------ARR14(2)            <xxxxxxxxxxxxxxxxxxxxx
           <---------DAG2              <---------AHL20(2)                     <xxxxxxxxxxxxxxxxxxxxx
           <----------DOF2           <---------YAB1                          <xxxxxxxxxxxxxxxxxxxxxx
          --------->TOE2(3)        <---------ICU4<------ZmHOX2a(2)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
        -------->P                 --------->AHL20(2)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
  xxxxxxxxxxxxxxxx>smallRNA(i)     --------->ATHB51                     <---------HSFB2a(2)
  <xxxxxxxxxxxxxxxxsmallRNA(i)     <---------AHL20(2)          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
--------ANAC58               --------->TOE1(3)  --------->ARR11(3)  <---------ARR14(2)<----------DOF2
--------ANAC58           ---------->DOF2       <---------GLK1(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
--------ANAC46  --------->YAB1    --------->ICU4--------->ARR14(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
-----CCA1(2)   <---------YAB1--------->TOE2(3) --------->GLK1(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
 
agcttgggacttacctttatcattctactaaagcttaattattttttgagagatcccctattactgaagcctattctgtaagggaccatctttgtctctt  5267400
                                                     --------->LBD16
                                                    --------->HSFC1(1)
                                   xxxxxxxxxxxxxxxx>smallRNA(i)
           <xxxxxxxxxxxxxxxxsmallRNA(i)<---------WOX13(1)
           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <---------HSFB2a(2)
          <xxxxxxxxxxxxxxxxsmallRNA(s)<---------ANAC46
          <xxxxxxxxxxxxxxxxsmallRNA(i)<---------ANAC58
        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <---------HSFC1(1)
      --------->TOE1(3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              <---------ARR14(2)
      --------->TOE2(3)    <---------TOE2(3)        --------->HSFB2a(2)         <--------P
   <-----------GT1        --------->YAB1 xxxxxxxxxxxxxxxx>smallRNA(s)         ----------->GT1
xxsmallRNA(se3)         <---------WOX13(1)   <-----------GT1                  <------MYB46(1)
xxsmallRNA(se3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    ------->TEIL  <------MYB83
xsmallRNA(se3)        --------->ATHB12<---------ANAC58       <---------ATHB12<---------AtMYB61  ----
xxsmallRNA(se3)      <-------TEILxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)---------->DOF2           -----
xsmallRNA(se3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)---
xsmallRNA(fl3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <---------YAB1 <---------WOX13(1) <----
 
gacattttaccttagccaaatgagttcattgatgatgcattgcttgattcacgttccagaactaatgaatgttaaagggattggtagatttgaaaacatg  5267500
                                                                                 <------ZmHOX2a(1)
                                                                               <---------TOE2(3)
                                                                           <---------ZAT2
                             --------->YAB1                                --------->ZAT2
                            <---------YAB1                                 <---------At4g35610
                          --------->YAB1                                   --------->At4g35610
    <------NtERF2       <---------WOX13(1)  <---------TOE2(3)             <---------TOE1(2)
----->ALFIN1           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------CCA1(2)
-->MYC3               --------->ATHB12      <---------TOE1(3)     --------->YAB1<---------YAB1
------>REM1(2)      <---------WOX13(1)     --------->MYB52(1)    <------ZmHOX2a(2)
---MYC3 <xxxxxxxxxxxxxxxxsmallRNA(s)     <---------MYB52(2)      =======================HOX2a_HOX2a
 
tgtaggccgagcatatgagtcggattgattgataataaggcatgactaacgtttttgagtagacttcgatcatatcgcagcttaggattatcaacttgga  5267600
                                                                                          --------->ANAC58
                                                                                          --------->ANAC58
                                                    --------->ZAT14              <----------DOF2
                                                    <---------ZAT18             <---------ANAC46
                                                    <---------ZAT14             <---------ANAC58
                                           <----------DOF2   --------->ZAT2     <---------ANAC58
                                       <---------LBD16       <---------ZAT2 <---------ANAC58 <xxxxxx
--------->ATHB12     <---------ZAT6    <------NtERF2--------->ZAT18         <---------ANAC58 -------
 
cattgatttcatctagtttatctagtgttttgactctgagtccccgctttcaaactgcacttccagcttgttcttaattgtttgcttgagggcaagcaaa  5267700
                                                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                                                                 --------->YAB1
                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                                           <xxxxxxxxxxxxxxxxsmallRNA(se3)
                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->YAB1
                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -
            <---------At4g35610 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------CCA1(2)            <
 <---------TOE2(3)              <---------ANAC58            <----------DOF2                       <-
xxxxxxxxxxsmallRNA(i)           <---------AtLEC2            <---------DAG2 <---------YAB1         <-
--->DOF2    <-------GAMYB       <---------ANAC58        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    ----
 
gactaagtttaggggagttgataagtgtgtattttgcatgttttgagcatccatttgtcatcactttagcatcatatcatcactgttttatatcatttct  5267800
                                                                                                   <
                             <------MYB46(1)                                                       <
                       <---------TOE2(3)                                                         <xx
    <-----------TGA1   <---------TOE1(3)                                                         <xx
   --------->YAB1    *TSS<------ZmHOX2a(1)                                              xxxxxxxxxxxx
-------->ATHB12 <---------AtLEC2                                               --------->At4g35610<x
---------ICU4   <---------ANAC58                            <---------GLK1(1) <---------MYB46(3) <xx
--------YAB1    <---------ANAC58                        <---------MYB52(1)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
--------ATHB12  <-----------------AG  <-------TEIL     <-------GAMYB        <---------At4g35610 xxxx
----->YAB1  <----------DOF2  <------MYB83             <-----------RAV1(1)   --------->At4g35610 <xxx
 
catcattcgtcatcactttgcatgtttaggataggtttgcatacatattgcatatttctgttgatttctggtgatttggagctgttgacgagctaattgg  5267900
               <-----------HVH21
            <---------ICU4
        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
     <-----------ARR10
     ------->TEIL
     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
     --------->ARR14(2)                                           <---------ZAT14
     <---------ARR14(2) --------->ANAC46                          --------->ZAT14
    ------>NtERF2     --------->AtMYB61                        ------->GAMYB
   <xxxxxxxxxxxxxxxxsmallRNA(s)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
 --------->At4g35610 --------->MYB46(3)                     ----------->RAV1(1)
<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                        =============================RAV
xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      --------->TOE2(3)   ----------->RAV1(2)
xxxxxxxxxxxxxxxxsmallRNA(i)                          --------->ANAC58     <------ZmHOX2a(2)
xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                   ---
xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <xxxxxxxxxxxxxxxxsmallRNA(i)     <---------ARR14(2)    -----
xxxxxxxxxxx>smallRNA(fl3)          --------->ZAT2    --------->ANAC58    --------->ARR14(2)<--------
xxxxxxxxxxxxxxxsmallRNA(i)   xxxxxxxxxxxxxxxx>smallRNA(s)--------->AtMYB61==========================
xxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------ZAT2  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxx
xxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------ALFIN1<-----------HVH21<---------ZAT18   <---------HSFB2a(2)
xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<-----------RAV1(2) --------->ANAC46<<<<<<<<<TAC1  --------->HSFB2a(2)
 
aagaagcggacctgatcatgtcaaaccactcgacccccaggtcgagtagacgcttcacgacctcaacagaacactcgatcccctgttcgagtagtgtcct  5268000
                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                                                                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                              <xxxxxxxxxxxxxxxxsmallRNA(i)
                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)
                                                            xxxxxxxxxxxxxxxx>smallRNA(i)
                                                            <xxxxxxxxxxxxxxxxsmallRNA(i)
                                                            --------->ZAT14
                                                            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
           xxxxxxxxxxxxxxxx>smallRNA(i)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
       <---------At4g35610                                 xxxxxxxxxxxxxxxx>smallRNA(i)         ----
     <-----------GT1                                      <---------bZIP60(1)  xxxxxxxxxxxxxxxxxxxxx
   <-----------HVH21                                      --------->ANAC46 ------>NtERF2       -----
------>REM1(1)                                            --------->bZIP60(1) <------NtERF2   <xxxxx
->ZmHOX2a(1)                                           <------ZmHOX2a(2)--------->LBD16      -------
-ZAT18 --------->ANAC46                <---------ALFIN1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <------
==HOX2a_HOX2a                       --------->AtMYB61 <-----------HVH21--------->LBD16      <xxxxxxx
xxxxxxxxxxxxxxsmallRNA(fl3)       --------->SPL7  <<<<<<<<<TAC1  ----------->HVH21        --------->AtMYB61
 
tcaccatttcacctcatcactcgactccctagccgagtaccaccacgagaaacactcgatcacatcactcgaccccgaggccgagtgtcttcacctccac  5268100
                         <xxxxxxxxxxxxxxxxsmallRNA(s)
                        ----------->HVH21
                     <xxxxxxxxxxxxxxxxsmallRNA(i)
                    <xxxxxxxxxxxxxxxxsmallRNA(i)
                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                            xxxxxxxxx
                   xxxxxxxxxxxxxxxx>smallRNA(i)                                        <---------HSFB2a(2)
                   --------->ZAT14 <xxxxxxxxxxxxxxxxsmallRNA(i)                        <xxxxxxxxxxxx
                  xxxxxxxxxxxxxxxx>smallRNA(i)                                        <---------LBD16
                 <---------bZIP60(1)                                                 ----------->RAV1(2)
              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)             <---------ICU4        xxxxxxxxxxxxxxx
        <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              --------->MYB52(1)           <xxxxxxxxxxxxxx
       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           <---------MYB52(2)    --------->ANAC58
    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->ANAC58
------->RAV1(1)  --------->bZIP60(1) xxxxxxxxxxxxxxxx>smallRNA(fl3)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
xx>smallRNA(fl3) --------->ANAC46  <xxxxxxxxxxxxxxxxsmallRNA(s)--------->YAB1       -------->P
---->ANAC46   <------ZmHOX2a(2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          --------->ANAC46
xxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->LBD16    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxx
-->ANAC46    <-----------HVH21xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <------ZmHOX2a(2)xxxxxxxxxx
---ALFIN1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->AtMYB61      <-----------HVH21xxxxxxxxxxx
xxxxxxxxxxxxxxxxsmallRNA(l2)  --------->LBD16   <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  ------->TEIL
 
aacatgaccatcactcgatcacatcactcgaccccgaggtcgagtgtcttcacctccactaactgatcatcactcgatcacaccatctacctggaagtcg  5268200
                                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                                                                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                                                      --------->ANAC46
                                                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                                                   -------->P
                                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)
                                                                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                                                                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                                                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                                               --------->ANAC58
                                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                                               --------->ANAC46
                                                               --------->ANAC58          -----------
                                                             <---------ALFIN1        --------->ANAC58
                                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                                                            --------->ZAT14          --------->ANAC46
                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)        --------->LBD16          --------->ANAC58
               --------->ANAC46                             <---------ZAT18       <xxxxxxxxxxxxxxxxsmallRNA(i)
       <---------ICU4                                       --------->ZAT18  <xxxxxxxxxxxxxxxxsmallRNA(i)
       --------->YAB1                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
xxxxxxx>smallRNA(i)                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
xxxxxxxxxxxsmallRNA(le3)                     <---------GLK1(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
x>smallRNA(i)<---------ALFIN1         <---------ZAT2       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)
xxxxxxxxxsmallRNA(le3)                --------->At4g35610  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
xxxxxxxxxxsmallRNA(fl3)            <---------ANAC58       <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
xxxxxx>smallRNA(s)                 <---------ANAC58      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
xxxxx>smallRNA(i)                  <---------ANAC46     <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     -----
 
agtatcaccatcatcaccactcgactacatacttgatggcgagcttcagagtcttctccattccgcactcaaccagacactcgagcacaaggaagaaaaa  5268300
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AGI:  At2g12815.1   
Description:  transposable element gene. hypothetical protein
Range:  from: 5267822    to: 5268535    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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