Home
Tools
- Search
- Colocalization
- Gene Analysis
- Gene Identification
- Small RNA Targets
- MicroRNA Targets
Description
Documentation
Citations
Downloads
Publications
History
Contact
Links
Disclaimer
For complete usage of AthaMap please enable JavaScript in the settings of your browser!
Search
Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
<xxxxxxxxxxxxxxxxxx
<---------
PCF5
------>
ZmHOX2a(2)
<xxxxxxxxxxxxxxxxxxxx
<---------
ARR11(3)
<xxxxxxxxxxxxxxxxxxxx
<---------
ARR14(2)
<xxxxxxxxxxxxxxxxxxxxx
<---------
DAG2
<---------
AHL20(2)
<xxxxxxxxxxxxxxxxxxxxx
<----------
DOF2
<---------
YAB1
<xxxxxxxxxxxxxxxxxxxxxx
--------->
TOE2(3)
<---------
ICU4
<------
ZmHOX2a(2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
-------->
P
--------->
AHL20(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
--------->
ATHB51
<---------
HSFB2a(2)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<---------
AHL20(2)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------
ANAC58
--------->
TOE1(3)
--------->
ARR11(3)
<---------
ARR14(2)
<----------
DOF2
--------
ANAC58
---------->
DOF2
<---------
GLK1(1)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------
ANAC46
--------->
YAB1
--------->
ICU4
--------->
ARR14(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
-----
CCA1(2)
<---------
YAB1
--------->
TOE2(3)
--------->
GLK1(1)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
agcttgggacttacctttatcattctactaaagcttaattattttttgagagatcccctattactgaagcctattctgtaagggaccatctttgtctctt
5267400
--------->
LBD16
--------->
HSFC1(1)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<---------
WOX13(1)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
HSFB2a(2)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<---------
ANAC46
<xxxxxxxxxxxxxxxx
smallRNA(i)
<---------
ANAC58
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<---------
HSFC1(1)
--------->
TOE1(3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<---------
ARR14(2)
--------->
TOE2(3)
<---------
TOE2(3)
--------->
HSFB2a(2)
<--------
P
<-----------
GT1
--------->
YAB1
xxxxxxxxxxxxxxxx>
smallRNA(s)
----------->
GT1
xx
smallRNA(se3)
<---------
WOX13(1)
<-----------
GT1
<------
MYB46(1)
xx
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
------->
TEIL
<------
MYB83
x
smallRNA(se3)
--------->
ATHB12
<---------
ANAC58
<---------
ATHB12
<---------
AtMYB61
----
xx
smallRNA(se3)
<-------
TEIL
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
---------->
DOF2
-----
x
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
---
x
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<---------
YAB1
<---------
WOX13(1)
<----
gacattttaccttagccaaatgagttcattgatgatgcattgcttgattcacgttccagaactaatgaatgttaaagggattggtagatttgaaaacatg
5267500
<------
ZmHOX2a(1)
<---------
TOE2(3)
<---------
ZAT2
--------->
YAB1
--------->
ZAT2
<---------
YAB1
<---------
At4g35610
--------->
YAB1
--------->
At4g35610
<------
NtERF2
<---------
WOX13(1)
<---------
TOE2(3)
<---------
TOE1(2)
----->
ALFIN1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
CCA1(2)
-->
MYC3
--------->
ATHB12
<---------
TOE1(3)
--------->
YAB1
<---------
YAB1
------>
REM1(2)
<---------
WOX13(1)
--------->
MYB52(1)
<------
ZmHOX2a(2)
---
MYC3
<xxxxxxxxxxxxxxxx
smallRNA(s)
<---------
MYB52(2)
=======================
HOX2a_HOX2a
tgtaggccgagcatatgagtcggattgattgataataaggcatgactaacgtttttgagtagacttcgatcatatcgcagcttaggattatcaacttgga
5267600
--------->
ANAC58
--------->
ANAC58
--------->
ZAT14
<----------
DOF2
<---------
ZAT18
<---------
ANAC46
<---------
ZAT14
<---------
ANAC58
<----------
DOF2
--------->
ZAT2
<---------
ANAC58
<---------
LBD16
<---------
ZAT2
<---------
ANAC58
<xxxxxx
--------->
ATHB12
<---------
ZAT6
<------
NtERF2
--------->
ZAT18
<---------
ANAC58
-------
cattgatttcatctagtttatctagtgttttgactctgagtccccgctttcaaactgcacttccagcttgttcttaattgtttgcttgagggcaagcaaa
5267700
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
YAB1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
YAB1
<xxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
-
<---------
At4g35610
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
CCA1(2)
<
<---------
TOE2(3)
<---------
ANAC58
<----------
DOF2
<-
xxxxxxxxxx
smallRNA(i)
<---------
AtLEC2
<---------
DAG2
<---------
YAB1
<-
--->
DOF2
<-------
GAMYB
<---------
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
----
gactaagtttaggggagttgataagtgtgtattttgcatgttttgagcatccatttgtcatcactttagcatcatatcatcactgttttatatcatttct
5267800
<
<------
MYB46(1)
<
<---------
TOE2(3)
<xx
<-----------
TGA1
<---------
TOE1(3)
<xx
--------->
YAB1
*
TSS
<------
ZmHOX2a(1)
xxxxxxxxxxxx
-------->
ATHB12
<---------
AtLEC2
--------->
At4g35610
<x
---------
ICU4
<---------
ANAC58
<---------
GLK1(1)
<---------
MYB46(3)
<xx
--------
YAB1
<---------
ANAC58
<---------
MYB52(1)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
--------
ATHB12
<-----------------
AG
<-------
TEIL
<-------
GAMYB
<---------
At4g35610
xxxx
----->
YAB1
<----------
DOF2
<------
MYB83
<-----------
RAV1(1)
--------->
At4g35610
<xxx
catcattcgtcatcactttgc
atgtttaggataggtttgcatacatattgcatatttctgttgatttctggtgatttggagctgttgacgagctaattgg
5267900
<-----------
HVH21
<---------
ICU4
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<-----------
ARR10
------->
TEIL
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
ARR14(2)
<---------
ZAT14
<---------
ARR14(2)
--------->
ANAC46
--------->
ZAT14
------>
NtERF2
--------->
AtMYB61
------->
GAMYB
<xxxxxxxxxxxxxxxx
smallRNA(s)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
At4g35610
--------->
MYB46(3)
----------->
RAV1(1)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
=============================
RAV
xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
--------->
TOE2(3)
----------->
RAV1(2)
xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
ANAC58
<------
ZmHOX2a(2)
xxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
---
xxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<---------
ARR14(2)
-----
xxxxxxxxxxx>
smallRNA(fl3)
--------->
ZAT2
--------->
ANAC58
--------->
ARR14(2)
<--------
xxxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxxxxx>
smallRNA(s)
--------->
AtMYB61
==========================
xxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
ZAT2
<xxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxx
xxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
<---------
ALFIN1
<-----------
HVH21
<---------
ZAT18
<---------
HSFB2a(2)
xxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<-----------
RAV1(2)
--------->
ANAC46
<<<<<<<<<
TAC1
--------->
HSFB2a(2)
aagaagcggacctgatcatgtcaaaccactcgacccccaggtcgagtagacgcttcacgacctcaacagaacactcgatcccctgttcgagtagtgtcct
5268000
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
ZAT14
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
At4g35610
xxxxxxxxxxxxxxxx>
smallRNA(i)
----
<-----------
GT1
<---------
bZIP60(1)
xxxxxxxxxxxxxxxxxxxxx
<-----------
HVH21
--------->
ANAC46
------>
NtERF2
-----
------>
REM1(1)
--------->
bZIP60(1)
<------
NtERF2
<xxxxx
->
ZmHOX2a(1)
<------
ZmHOX2a(2)
--------->
LBD16
-------
-
ZAT18
--------->
ANAC46
<---------
ALFIN1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<------
==
HOX2a_HOX2a
--------->
AtMYB61
<-----------
HVH21
--------->
LBD16
<xxxxxxx
xxxxxxxxxxxxxx
smallRNA(fl3)
--------->
SPL7
<<<<<<<<<
TAC1
----------->
HVH21
--------->
AtMYB61
tcaccatttcacctcatcactcgactccctagccgagtaccaccacgagaaacactcgatcacatcactcgaccccgaggccgagtgtcttcacctccac
5268100
<xxxxxxxxxxxxxxxx
smallRNA(s)
----------->
HVH21
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxx
xxxxxxxxxxxxxxxx>
smallRNA(i)
<---------
HSFB2a(2)
--------->
ZAT14
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxx
xxxxxxxxxxxxxxxx>
smallRNA(i)
<---------
LBD16
<---------
bZIP60(1)
----------->
RAV1(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<---------
ICU4
xxxxxxxxxxxxxxx
<xxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
MYB52(1)
<xxxxxxxxxxxxxx
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<---------
MYB52(2)
--------->
ANAC58
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
ANAC58
------->
RAV1(1)
--------->
bZIP60(1)
xxxxxxxxxxxxxxxx>
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
xx>
smallRNA(fl3)
--------->
ANAC46
<xxxxxxxxxxxxxxxx
smallRNA(s)
--------->
YAB1
-------->
P
---->
ANAC46
<------
ZmHOX2a(2)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
ANAC46
xxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
LBD16
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxxx
-->
ANAC46
<-----------
HVH21
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<------
ZmHOX2a(2)
xxxxxxxxxx
---
ALFIN1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
AtMYB61
<-----------
HVH21
xxxxxxxxxxx
xxxxxxxxxxxxxxxx
smallRNA(l2)
--------->
LBD16
<xxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
------->
TEIL
aacatgaccatcactcgatcacatcactcgaccccgaggtcgagtgtcttcacctccactaactgatcatcactcgatcacaccatctacctggaagtcg
5268200
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
ANAC46
xxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
-------->
P
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
ANAC46
--------->
ANAC58
-----------
<---------
ALFIN1
--------->
ANAC58
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
ZAT14
--------->
ANAC46
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
--------->
LBD16
--------->
ANAC58
--------->
ANAC46
<---------
ZAT18
<xxxxxxxxxxxxxxxx
smallRNA(i)
<---------
ICU4
--------->
ZAT18
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
YAB1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxx
smallRNA(le3)
<---------
GLK1(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
x>
smallRNA(i)
<---------
ALFIN1
<---------
ZAT2
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
xxxxxxxxx
smallRNA(le3)
--------->
At4g35610
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxx
smallRNA(fl3)
<---------
ANAC58
<xxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxx>
smallRNA(s)
<---------
ANAC58
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxx>
smallRNA(i)
<---------
ANAC46
<xxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
-----
agtatcaccatcatcaccactcgactacatacttgatggcgagcttcagagtcttctccattccgcactcaaccagacactcgagcacaaggaagaaaaa
5268300
Previous
Next
AGI:
At2g12815.1
Description:
transposable element gene. hypothetical protein
Range:
from: 5267822
to: 5268535
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
printer-friendly version