Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               <---------ARR14(2)                             --------->ARR14(2)                            <----------TaMYB80                        --------->ANAC58                        --------->ANAC58                      --------->MYB52(1)                      ------>MYB83                      ------>MYB46(1)                     --------->MYB55(1)                                         --------->LBD16                    <---------MYB111(1)                                    <---------GLK1(1)                    <---------MYB46(2)                                     --------->GLK1(1)                    <---------MYB55(2)                                --------->At4g35610                    <---------MYB52(2)                                <---------At4g35610<---------At4g35610                    --------->MYB46(3)          --------->MYB52(2)    --------->ZAT2     ----------->RAV1(2)                    <---------MYB111(2)       <--------P              <---------ZAT2     --------->At4g35610    <-----------GT1 --------->AtMYB61       ----------->GT1    <-----------RAV1(2)  --------->GLK1(1) --------->YAB1    --------->ANAC46        <---------TOE1(3)  <---------ZAT14  <---------HSFB2a(2) ----->ZAT6     --------->MYB46(3)         <---------TOE2(3)  --------->ZAT14  --------->HSFB2a(2) ---->HVH21   <---------WRKY18(1)          --------->MYB59   <-----------HVH21<---------LBD16 -------   cactaataaccaagtttgaccaccaaacgcatattcacacagagtaaggttagttcaagaacacttcagggaagctgaattctgggaactcatctgaagt  4798200                                                                                            <--------                                                                                            <--------                                                                                     --------->ZAT14                                                      ----------->GT1                <---------ZAT18                            <---------ARR14(2)        <------MYB83            <----------DOF2                   <---------YAB1 --------->ALFIN1    <------MYB46(1)        <---------ANAC58        <---------YAB1<---------WOX13(1)        <---------WOX13(1)           <---------ANAC58<-------    ----------->GT1<---------ATHB12          <---------YAB1          --------->ANAC58--------->ZAT18 ---->GT1--------->YAB1 --------->YAB1     --------->YAB1            --------->ANAC58<---------ZAT14   aaaatgtagtataatggtctaatgaatgacaatacggtgttgctaacatgatagataggttaaactaaaacaggcattggcttttagtgcattggctttt  4798300                                                    <---------CCA1(2)   ------>ZmHOX2a(1)                         ------>ZmHOX2a(1)                       --------->CCA1(2)   ==========================HOX2a_HOX2a    <---------MYB59                         <---------ARR11(3) -ANAC58              ------>ZmHOX2a(2)    ----------------->AG                     --------->ARR14(2) -ANAC58              ==============================HOX2a_HOX2a              --------->GLK1(2)------>ZmHOX2a(1) ---DOF2       <----------DOF2             ==========================================================   agttcctccaacttactcttttgatccagccttgaatgtgtagtttcctaattcgtctcttctcaagcttgtatttgaaaatccaagatttgaatccttt  4798400                                                               xxxxxxxxxxxxxxxx>smallRNA(i)                                                             <---------ZAT14                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                 --------->ALFIN1            --------->ZAT14             --------->ANAC55(2)                           <---------------AGL15             <---------ZAT18    <---------YAB1                           <----------DOF2                   --------->ZAT18    <-----------GT1                          ===========================================================MADS_MADS                          <-----------------AGL3       <----------DOF2     ----------->GT1        <<<<<<<<<TBF1     --------------->AGL15    <---------ALFIN1        <------MYB46(1)     <<<<<<<<<TBF1        --------->TOE2(3)    ------>ZmHOX2a(2)   <-----------------AGL3<xxxxxxxxxxx ===========================================MADS_MADS <---------DAG2       <------MYB83  <---------ANAC55(2)   catcttcttcttcttcgtttccagtctacctttaagtggagacatttgatcgaacaccttttgtgcagaacaatatttggttatactagtcacttgttga  4798500                                                              <-------MYC2                                                              ------->MYC4                                                              <-------MYC3                                                              ------->MYC3                                                              ------->MYC2                                                            <-------MYC3                                                         <---------ALFIN1                                                   --------->bZIP60(1)                        --------->YAB1             <---------bZIP60(1)                  <---------At5g28300                     --------->WOX13(1)            <---------TGA2(1)                   <-----------GT1                <---------ATHB12  <----------DOF2  --------->TGA2(1)          --------->ZAT6 xxxxxxxxxxxxsmallRNA(fl3) <---------ICU4   <---------YAB1  ------->MYC3    ----------->RAV1(1)------   attctctcaacttgacaaatcatccatcataatgttcttttgaattttcaatgacatcaccacatgtgctaagttgtccaacactaaatttacagcccaa  4798600                                        ----------->RAV1(1)             <------MYB46(1)                                  ---------->DOF2                       <---------MYB46(3)           --------->ANAC46   ------>MYB83                          --------->ICU4           *TSS               ------>MYB46(1)                       <-----------RAV1(1)          --------->ZAT14    --------->WOX13(1)              <------------CBF <---------YAB1 <-------          <---------ZAT14   --------->AtMYB61      <---------ARR14(2)   <------MYB83  ------------>CBF ---->DOF2<---------REM1(2)------------>CBF        --------->ARR14(2) <--------P   ----------->GT1   agttccatgctctacacaagtttaagaacaccaatccaaagcccacataagagaatacactaaaattgtcatgttggtttacgaatggttcaatctcgtg  4798700                                   <---------ANAC58                        <---------ANAC58                        <---------ANAC46           xxxxxxxxxxxxxxxx>smallRNA(i)    <------------CBF    <---------ANAC58                                <---------MYB52(1)        ---   <------ZmHOX2a(1) --------->ALFIN1                               <---------At5g28300           <--  <---------YAB1   <---------bZIP60(2)                     --------->ANAC58                      ---- <---------TOE2(3) <-----------RAV1(1)    <----------DOF2  --------->ANAC58                    <----- --ANAC46 <------------CBF         <---------ANAC58---------->DOF2 ------------>AtMYB77    --------->AtLEC2   gtttaggattgaaattgggttatgtggcgagaagatgggttgtgctttcatttcaaagcccaagcccagttacagttggctcaaaatagctcgatgcaga  4798800                              <---------ANAC58                         ---------->DOF2                    <------NtERF2                    ------>NtERF2                   <---------ZAT18       ---------->DOF2                  <---------ANAC58     --------->ANAC58           <---------ZAT14                  <---------ANAC58     --------->ANAC58           --------->ZAT14           ----------->ARR10  <---------ANAC46               <-------TEIL                  <---------ARR11(3)          <------ZmHOX2a(1)   <---------ANAC58              --------->GLK1(2)              --------->ARR11(3) -------->GT1<---------ARR14(2)  --------->REM1(2)         <---------GLK1(2)           ---------->DOF2 ----ZmHOX2a(1)   <---------ANAC46--------->ALFIN1         <---------ARR14(2)   ----------->GT1 ------->GT1 --------->ARR14(2) --------->ALFIN1           --------->ARR14(2)  <---------------AtSPL8 ----At4g35610   <---------LBD16<---------ANAC46      <-----------GT1         <XXXXXXXXXXXXXXXXXXXXXMIR831   ggataaaacagaggagattggcggacttgaagccgtgtggaacgaaagaatacttgttacagattcagtatagtgagaagaagagtacaaaaagatttca  4798900                                                                      --------->At4g35610                                                                    <---------ZAT18                                                               <---------ZAT14                                                        <---------GLK1(2)                                                        --------->ARR14(2)                                                        <---------ARR14(2)                                                    <-----------------AGL1                                                    <-----------------AG       --------->LBD16                                                   <-----------GT1  --------->ZAT18                                             <----------DOF2<------MYB46(1)   <---------LBD16                                             <---------DAG2 <------MYB83<----------DOF2    <------ZmHOX2a(1)                          <--------P      <-----------GT1  --------->MYB59   <---------LBD16   aatggtttacgactggttcagtctcatggttagtcttcggtttattactttatttacagatttggtatagtgagctttaaccgggaaacattaggaacat  4799000                                 --------->ANAC58                                 --------->ANAC58                              ------>MYB83                   <---------ARR11(3)                   --------->ARR11(3)  ----------->GT1   ----------->GT1    ---------->DOF2                  --------->GLK1(1)  ---------->DOF2--------->DAG2  --------->GLK1(1)             ----------->GT1  ------>MYB46(1)      ---------->DOF2  <---------GLK1(1)           <----             <---------ANAC46 -------->P      --------->YAB1  ---------->DOF2     ----------->GT1   gttattgctctcgtttagtgaaatcttttaccaacaagaaaaagaaaatcagaaaaagttggaaaaaaggaaatcagtaaaagttggaaaaatgtattgt  4799100  Previous    Next  AGI:  At2g11870.1    Description:  pseudogene, hypothetical protein Range:  from: 4798231    to: 4798611    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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