Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    <---------DEAR3(1)                                                                                  <---------TOE1(2)                                                                                 <------NtERF2                                                                                xxxxxxxxxxxxxxxxxxxxx                                                                               --------->ETT(1)                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                              xxxxxxxxxxxxxxxx>smallRNA(i)                                                                              xxxxxxxxxxxxxxxx>smallRNA(s)                                                                            <-----------RAV1(1) xxxxx                      --------->LBD16                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                     --------->LBD16                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                --------->GLK1(1)                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                <---------GLK1(1)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               <---------ARR14(2)                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               --------->ARR14(2)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            --------->LBD16                          <---------ICU4       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <---------LBD16                      <-----------GT1   <---------AHL20(2)<xxxxxxxxxxxxxxxx          <---------LBD16                  <---------AHL20(2)    --------->AHL20(2)xxxxxxxxxxxxxxxxxx         -------->P <---------LBD16  --------->HSFB2a(2)    <---------TOE1(2)<-----------HVH21 ------        --------->MYB52(1)           <---------HSFB2a(2)   ------>ZmHOX2a(1)xxxxxxxxxxxxxxxx>smallRNA(i)   attaacaggctaaccgggataccccggttcaatcgacttctcgattttattcacattattcctcggtttaaattggtattgtcggaggtgctaattcctg  3760100               --------->ANAC46           <---------ZAT18                                                                     <-----  ------>MYB83<---------ALFIN1                                                                 ------  ------>MYB46(1)                                                                              <----- ----------->RAV1(1)         --------->GLK1(2)        ----------------->AGL1                   <----- xx>smallRNA(si3)            <---------ARR14(2)   <---------HSFC1(2)                --------->ARR11(3) x>smallRNA(le3)  <---------ALFIN1                --------->HSFB2a(1)              <---------CCA1(2) xxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ZAT2 <---------HSFB2a(1)            <---------AHL20(2) xxxxxxxsmallRNA(si3)   --------->LBD16 <---------MYB59<---------------AGL15     --------->AHL20(2) xxxxx>smallRNA(le3)  <---------LBD16  ----------------->AGL1               <---------AHL20(2) <----- >ZmHOX2a(1) <---------ALFIN1--------->ARR14(2)   --------->HSFC1(2)--------->AHL20(2)         ------   caccaacaattagtccccccccagtccggagaatccgagttgcctaattcgaaatttccgaacttagaaattgaatatttgatttaaatcttggaagacg  3760200             <------ZmHOX2a(2)             --------->GLK1(1)                      <-----------HVH21             <---------GLK1(1)                    <-------MYC2            <---------ARR14(2)                    ------->MYC4            --------->ARR14(2)                    <-------MYC3      --------->YAB1                              <-------MYC4      <---------ICU4                              ------->MYC3      <--------HAHB4                              -------->ABF1      --------->ATHB12                            ------->MYC2     <---------ATHB12                            <---------TGA1a                                    <     <---------YAB1                              <---------O2                                      <-     --------->ICU4                              --------->TGA1a                                   <-   --------->WOX13(1)                            --------->O2                                     <--  <---------AHL20(2)                             <--------ABF1                      --------->At4g35610  --------->AHL20(2)                             --------->ANAC55(2)                <---------At4g35610 ----ANAC46 <---------ARR11(3)                   <---------ANAC55(2)            ----------->HVH21 --- ----->GT1  --------->ARR11(3)              ----------->HVH21          --------->SPL7             <-- ----ANAC55(2)------>ZmHOX2a(2)          ------->TEIL             --------->At4g35610      --------->ARR14(2) ----TGA1a  <---------AGP1               <---------ARR14(2)       <---------At4g35610  xxxxxxxxxxxxxx ----O2    <---------CCA1(2)         <---------TOE1(2)           ------------------>SPL14  <---------ARR14(2) --->O2--------->TOE2(3)  <-------TEIL   --------->ARR14(2) <-----------HVH21 <---------ANAC46    ---   tgaattaatcattagatctccgaatcgattcgtatttcgaacgtatttgacacgtgtcaaatcgtcgcatctgtacgcgcgcgtgaagctcaagaaccga  3760300              <---------TOE2(3)        <------MYB83        <------MYB46(1)       <---------TOE1(2)       <---------TOE2(2)      <---------MYB52(1)             <------NtERF2                             <---------ICU4     --------->LBD16                ------>NtERF2                           --------->GLK1(1)     <---------MYB52(1)            --------->ATERF1(2)                      <---------GLK1(1)    <---------ANAC46               --------->DEAR3(1)                    --------->LBD16  --------->SPL7           <---------TOE2(2)                            <---------HSFB2a(2) -----------HVH21          <---------TOE1(2)                          <---------LBD16 --------ANAC58 --------->YAB1     --------->RAP2.6(2)           ------>MYB83 <---------ATHB12 --------ANAC58--------->ICU4      <---------ATERF1(2)           ------>MYB46(1) -------HSFC1(2)-------->HAHB4<---------ANAC58                 <---------MYB59--------->ICU4 ------>HSFC1(2)<---------ICU4<---------ANAC58                 --------->AtMYB61          ------>NtERF2 -------HSFB2a(1)       --------->TOE1(1)            --------->AHL20(2) --------->HSFB2a(2)        -- xx>smallRNA(s)<---------ATHB12   ---------->ARF1    <---------AHL20(2)<---------LBD16 <---------At4g35610 ------>HSFB2a(1)       --------->TOE2(1)    ---------->ID1    --------->MYB46(3)     <-----------RAV1(1)   agcgtcccgtaggtttaatgatgacctcgtaggcttgccgcccattcgtctctatttatattcgaccaaaccctcgggaaatcattttctgccgcttgca  3760400                                                                                  --------->DAG2               <----------DOF2                                                 *TSS              <---------ANAC58                      <---------GLK1(2)   ------------>CBF              <---------ANAC58        --------->AHL20(1)               ------>NtERF2             <---------At4g35610      <---------AHL20(2)              <---------ETT(1)           <--------P                <---------AHL20(2)               ----------------->AGL1        <---------TOE2(3)            --------->ATHB51                 <---------LBD16      ---------->DOF2       ------>ZmHOX2a(1)   <-----------GT1      <---------LBD16 ------->YAB1--------->At4g35610     --------->AHL20(2) <----------DOF2--------->LBD16           <---   agaagaatcaaaggtagctttcgctctctcctctacgaattattttgtattctcgattctttatcgatttttccggcaatgggtaaggctgttcttgttt  3760500                                                                      ----------->TGA1                                                                      ----------->HVH21                                                                    --------->O2                                                               <---------ARR14(2)                                  --------->MYB52(2)           --------->GLK1(2)                          <---------HSFC1(2)                  <---------GLK1(1)                          --------->HSFC1(2)                  --------->GLK1(1)                          <---------HSFB2a(1)              --------->LBD16                 --------->LBD16  <---------MYB46(3)      <---------LBD16                 --------->HSFB2a(2)     --------->ANAC46<---------LBD16     <---------At4g35610                --------------------->WRI1  <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->At4g35610     ------>ZmHOX2a(1)    --------->HSFB2a(1)        <---------MYB52(1)     ------->TEIL        <---- --------GT1  ------>ZmHOX2a(1) <---------MYB52(1)  <-------GAMYB   --------->ANAC46            -----   ctccgtcctcttcttcctccgagagcgaagcgtcgttagttcgccgaaactctcggttaaccgggaatccaagtgacgaagctcaatctagtcgatcgaa  3760600                                                 <---------ETT(2)                                               <---------MYB52(1)                                              --------->LBD16                                            <---------LBD16                                          <---------ARR14(2)                                          --------->ARR14(2)                                        <------MYB83                                        <------MYB46(1)                                        <---------HSFB2a(1)             --------->CCA1(2)                                        --------->HSFC1(2)              --------->GLK1(2)                                  ------>ZmHOX2a(2)                     --------->ARR14(1)                                  <---------LBD16<---------ZAT18       --------->ARR14(2)                  <---------MYB46(3)    --------->HSFB2a(1)            <---------GLK1(2)              --------->TGA1a    <------ZmHOX2a(2)                     <---------ARR14(2)              <---------O2      <---------ARR14(2)                     --------->ARR11(1)              <---------TGA1a   --------->ARR14(2)                ------>ZmHOX2a(1)        --------->GLK1(2)   ----------------->AGL1           <---------At4g35610   ------>ZmHOX2a(2)<---------WOX13(1)  <---------HSFC1(2)   <---------ZAT2<---------ANAC46  <------ZmHOX2a(2)<---------ANAC46   <--------P--------->ALFIN1----------->RAV1(2) <---------ARR14(2)<---------ANAC58<---------HSFB2a(2)      <---------ATERF1(1) --------->ARR14(2)<---------ANAC58--------->HSFB2a(2)    <---------At4g35610                       - -----ARR14(2)--------->O2  ----------------->AGL2  <---------GLK1(1)----------->ARR10  <---------At4g35610 ---->ARR14(2)=================================MYC_MYB    --------->LBD16<-------TEIL   --------->At4g35610   tcggatcgaaattccgacgttgcttgatgagccagatcgggaaggttccggtggacatcccgctgctcctgaagattcggtggattttttagctcagttc  3760700                                           --------->ARR14(2)                                           <---------ZAT14                                           --------->ZAT14                                     --------->ANAC46                                  <---------ARR14(2)                                  ------->TEIL                                  --------->ARR14(2)                               --------->ANAC46                               --------->ANAC58                               <---------ANAC55(2)                               --------->ANAC55(2)                               --------->ANAC58                               --------->ANAC55(1)    <---------ATHB12      --------->REM1(1)<---------ARR14(2)  ------>MYB46(1)     <---------ANAC58--------->At4g35610  ------>MYB83        <---------ANAC58--------->LBD16 <---------ALFIN1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -------->MYB46(3)<------ZmHOX2a(1) <---------LBD16         ---------->DOF2      <------ZmHOX2a(1)   gacccactcatcgacctggaggatgcttacaacacgcatccgcagtatacagaggctgaagttaatgcgagattacttcatgaggattatgtcgaatttg  3760800                                                                                                    <                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                  ---                                                                                                  <--                                                                                               ------                                                                                             <-------                                                                                             <------NtERF2                                                                                            ------>NtERF2                                                                                           <---------ARR14(2)                                                                                           --------->ARR14(2)                                                                                          <---------At4g35610                                                                      --------->LBD16     --------->ATERF1(1)                                                                     <---------ANAC46    <---------RAP2.3(1)                                                                     <------NtERF2       <---------ATERF1(1)                                                             <-----------HVH21          <---------RAP2.6(2)                                        ---------->DOF2   ------->GAMYB                 <---------DEAR3(1)                                   --------->At5g28300 ------->GAMYB<---------LBD16     <---------RAP2.3(2)                                  ----------->GT1     <---------MYB111(2)              <---------LBD16              --------->ATHB12<------ZmHOX2a(2)       <---------MYB55(2)              <-----------RAV1(1)         <---------ATHB12    --------->ARR11(3)       <---------MYB52(2)        <---------At5g28300<-     <---------MYB59         <---------ARR11(3)       --------->MYB46(3)       <-----------GT1<------   acctcgacccaattgttcattggaacaccgagatcaccgtaaaaaagaccctttcaacaaccgagtcagtcgcggaagtatttaccttgtgcggctccgg  3760900     <---------ALFIN1    <---------ZAT18    --------->DEAR3(1) ------>ZmHOX2a(2) ------ZmHOX2a(2) ------->ARR11(3) --------ARR14(2)                                            <---------GLK1(1) ------->ARR14(2)                                            --------->CCA1(2) ------>GLK1(1)        <---------LBD16                      --------->ARR14(2) -------GLK1(1)        --------->HSFB2a(2)                  <---------ARR14(2) --->LBD16             <---------HSFB2a(2)     --------->ARR14(2) --LBD16           <---------GLK1(2)           <---------ARR14(2)                                  <- --------ARR11(3)<---------YAB1                <---------GLK1(1)      ------->TEIL             <----- ---ANAC46     --------->ANAC55(2)        ------>ZmHOX2a(1)<------ZmHOX2a(1)                 >>>>>>>>   agatcgcccactcacttacatgattctcggagaagatgagcgtccttggaatccccctcgaggatatgtctgtatgtatgaagcctacttcagacagtgt  3761000  Previous    Next  AGI:  At2g09910.1    Description:  transposable element gene. similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT3G10100.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1); contains domain (Phosphotyrosine protein) phosphatases II (SSF52799) Range:  from: 3760479    to: 3764291    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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