Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         --------->At4g35610                                                                                <-----------GT1                                                                             <---------ICU4                                                                             <--------HAHB4                              <---------At4g35610                            --------->ATHB51                 <---------------AGL15                              --------->PCF2 --------->TOE2(3)                 --------------->AGL15                        <---------DAG2<---------YAB1                <---------TOE2(3)       <---------YAB1     <---------ALFIN1 --------->ICU4    ------- ->P  --------->ARR11(3)   ---------->DOF2              <-----------GT1<---------ALFIN1<---------At4g35610 --->RAV1(1)   <-----------GT1--------->At4g35610<----------DOF2   <-----------HVH21<----------DOF2   tgagggtttatcttgtttaacatttttagtaaagctgcaactattcttgaacttttgtttaccaccttctgtcccaccattattacctttgctgcaattt  3752900                                                                --------->DAG2                                                   --------->AHL20(2)                    --------->TOE2(3)     --------->YAB1--------->YAB1       ----------->GT1     --------->YAB1             -------->P  --------->YAB1  --------->AHL20(2)   <---------------AtSPL8  ---------->DOF2    --------->ZAT6 ---- -->ICU4 ---------->DOF2            <-----------GT1<---------AHL20(2)      <---------TOE2(3) <-------   tggataataacaaaagacaaataataaacaaaatgtattaactggtacaaaatataaatttttcataaagctcaattgaagttaacacttacctcataac  3753000                                                                        <---------AtMYB61                                                                 <-----------RAV1(2)                                                              --------->ANAC58              <--------                                                              --------->ANAC46              ---------                                                           --------->ARR14(2)            <---------ATHB12                          <---------ZAT6   <---------MYB46(3) --------->ANAC58       <------NtERF2 ----->TOE2(3)        <---------YAB1   --------->DAG2      <---------ARR14(2)       ------>NtERF2<--- --CCA1(2)           --------->TOE2(3)---------->DOF2     <----------TaMYB80      ------->GAMYB------   ttcaattcgattatcaacttcattcttagtgtccatgatataaagctgttggaattttgcatatacgccaggttttggtttcaacgcgcctatcaagtga  3753100                                 --------->ANAC58                                 =================bZIP_DOF                                 <---------TGA1a                                 <---------O2                                 --------->ANAC46                                 --------->ANAC58                                 --------->O2                    ------>NtERF2                                 =================================MYC_MYB       <----------DOF2           --------->TGA1a            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)       ====================================bZIP_DOF        <---------ANAC58 -ANAC55(2)                      --------->bZIP60(2)     -------->P--------->AtMYB61 >ANAC55(2)                    <---------ALFIN1    ------>ZmHOX2a(2) ------WOX13(1)             <---------PCF5  <-----------GT1<---------ANAC58 --->ATHB12         --------->YAB1     <----------DOF2   ------->TEIL            --------->YAB1   ttgttttctctttgtaaaacaaacatagatggaccacgtctcttttttactgatcgatctaccttgccaccaatagatgtgaatgaaaacaacatgttgt  3753200                                                        <---------ALFIN1                                                        ----------->RAV1(1)                                                     --------->AtMYB61                                                     ------->GAMYB                                                    --------->MYB46(3)                                                    <---------MYB55(2)                                                   -------->P                                               --------->ANAC58                                               --------->ANAC58                   <---------------AGL15                                               --------->ANAC46                   --------->YAB1                                         <---------ANAC46                        >>>>>>>>>MYB98                                         <---------ANAC58           --------->ANAC55(2)                        <-----------GT1  <---------ANAC58          <---------TOE2(3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)    <---------AHL20(2)<-----------GT1------   atggtctgatatttgctctaaacaatttagcatcttcatggtcgcttgtaagcaaccaccacatatatttaggtgattcttttaacataagtagaacaat  3753300                                                                               --------->ANAC46 -----                                                                     --------->HSFB2a(2)  --------->ETT(2)                  ----------->GT1             *TSS                   <---------HSFB2a(2)  <---------ETT(2)    --------->AtLEC2      <---------LBD16------>ZmHOX2a(1)       <---------ZAT14   ------------>CBF   ------>ZmHOX2a(1)     ----------->RAV1(2)------>ZmHOX2a(1)    --------->ZAT14 --------->ANAC46 --->GLK1(2)      ------>ZmHOX2a(1)--------->ZAT6           ------>ZmHOX2a(1)<-----------GT1    <----   ctgtccttgcatacaacatcctgtaaaacctggattagcactcctccttcttctatttagtcctcactgtaccagaaaattacaccacaatgtagacatg  3753400                                                                                                   <-                                                                                              -------                                                                                              <------                                                                                              -------                                                                                              <------                                 ----------->GT1                                              -------                           --------->TOE2(3)                                                  <------                           --------->TOE1(3)            ----------->GT1               --------->AHL20(2)                     --------->YAB1                    --------->AHL20(1)            --------->AHL20(1)                    <---------YAB1         ------------>CBF              <---------ANAC58 <---------AHL20(2) -->MYC3         <---------MYB52(1)       --------->TOE2(3)              <---------ANAC58--------->AHL20(2) ---MYC3 <---------ALFIN1 ----------->RAV1(2)   --------->YAB1        <-----------GT1<---------AHL20(1)   tgtgattcgcatcaccttcgttatgataacctgaatcgaaaaaacatcaataacaaatatgttatataagtttttccttgtttctaatatatataatata  3753500                                ------>MYB46(1)          <----------DOF2       ------>MYB83        <---------YAB1        --------->AtMYB61                                                 -----      --------->YAB1          <---------MYB46(2)                                               ------     <---------ATHB12         <---------MYB111(2)                           --------->YAB1    ------- ----------GT1               --------->ANAC58                   <----------DOF2              <------- -->ARR11(3)                 --------->ANAC46           <-----------GT1    <------ZmHOX2a(2) <------- ---AHL20(2)                 --------->ANAC58      ------>ZmHOX2a(1)    <---------ETT(2)     -------- -->AHL20(1)               --------->REM1(1)       ===============================HOX2a_HOX2a<------- ---AHL20(1)             ----------->RAV1(1)      --------->TOE2(3)    --------->DDF1--------->MYB59 -->AHL20(2)        --------->At4g35610    <---------AHL20(2)--------->ARR11(3) <---------AHL20(2) ---ARR11(3)        <---------At4g35610    --------->AHL20(2)<---------ARR11(3)<---------AHL20(1)   ttaacaaatcatctttgtttgaagctgcaacaccaaactccttgtttaaattccttattaacaaatctttcatgtcgatcatatattttggtccaacaac  3753600                                                                                         <-----------RAV1(2)                                                                                      <---------ETT(2)                                                                                ------>MYB83                                                                   <---------GLK1(2)  --------->ETT(2)  ------>ZmHOX2a(2)                                          --------->YAB1     ------>MYB46(1) ------>RAV1(2)                                             <---------YAB1----------->HVH21 -->P   --------->At5g28300                               --------->YAB1----------->RAV1(2) >GAMYB----------->GT1                                --------->AHL20(1)--------->At4g35610 --MYB111(2)         --------->ANAC46                --------->AHL20(2) <---------At4g35610 <------ZmHOX2a(1) --MYB55(2)    <----------DOF2              --------->ZAT14<---------ARR11(3)   --------->ARR14(2) ->MYB46(3) --------->ARR11(3)              <---------ZAT14--------->ARR11(3) <---------MYB59 ------- --MYB111(1)<---------ARR11(3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------ARR14(2)   ctgatcgctcggtaaatctttatccgactcatactcttcttactactacagtcaaatatatgatcatcaaattcttctgacctatctgtagacaggagat  3753700                                                                                            <--------                                                                                            ---------                                                                                   <--------HAHB4                                                                                   --------->ATHB51                                                                                   --------->ATHB12                                                                                   <---------ICU4                                                                                  --------->ICU4  <--                                                                                <---------------AGL15                                                                                --------------->AGL15                                                                               ----------------->AGL2                              --------->ZAT6                             --------->TOE2(3)  ---------                              <-----------GT1                          <---------TOE2(3)    <--------                    --------->ANAC58                                   <---------YAB1       ---------                    --------->ANAC58           <--------P             <-----------GT1<---------YAB1                   --------->DAG2         ---------->DOF2           <---------WOX13(1)--------->YAB1        ----------->GT1     <-----------GT1 <---------TOE2(3)     --------->ATHB12<---------YAB1  <--   ---------->DOF2---------->DOF2        <---------AHL20(2)      <---------YAB1----------------->AGL3 -->At4g35610--------->AHL20(2)      --------->AHL20(2)    ---------->DOF2   <-----------GT1<--------   gaaatgaaagtagaaaaaaataaagcaattttacactgtttatataaaggtagctatttttaaaagtatgattaacattataccattattagaatatatt  3753800  Previous    Next  AGI:  At2g09890.1    Description:  transposable element gene. pseudogene, similar to putative helicase, PIF1 family of mitochondrial helicases; blastp match of 41% identity and 4.2e-193 P-value to GP|14140296|gb|AAK54302.1|AC034258_20|AC034258 putative helicase {Oryza sativa (japonica cultivar-group)} Range:  from: 3749517    to: 3753346    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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