Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        <---------------AGL15                                      --------------->AGL15                                     ----------------->AGL3 ---->ZmHOX2a(2)                     ----------------->AGL1 ----ZmHOX2a(2)            <---------AHL20(2) --------ARR10             --------->AHL20(1) ----->ARR14(3)            --------->AHL20(2)                    --------->HSFC1(2)     <---------AHL20(2) ----->AGP1               --------->AHL20(2)                     <---------HSFB2a(1)   --------->AHL20(2) ------ARR14(3)       --------->AtMYB61                          --------->HSFB2a(1)   <---------AHL20(2) ----->ARR11(3)     ----------->RAV1(1)    <---------YAB1        <---------HSFC1(2)<---------YAB1 ------AGP1  ---------->DOF2         ----------------->AG  ---------->DOF2      <-----------GT1 ------ARR14(2)   --------->ZAT18 --------->GLK1(1)     --------->At5g28300 <---------AHL20(2) ----->ARR14(2)--------->ANAC58   <---------GLK1(1)    ----------->GT1     <---------YAB1         --- ------ARR11(3)--------->ANAC58 --------->ATHB12    --------->AtLEC2      <---------AHL20(2)     <---   atcttaatgctaacaacaagcccaccaaaaaaattgatttccaatatgagagacatgcagtaaaagaaatttctatttttattttctaattaaatgttta  2987000                                                      <----------DOF2                                                      <---------DAG2                                                    --------------->AGL15                                                    <---------------AGL15                                                  <---------ZAT14                                                  <---------ZAT18                                                  --------->ZAT14                                                <-------MYC3                                                <-------PIF4                                                ------->PIF4                                                ------->MYC3                                                ------->PIF5                                                <-------MYC2                                                ------->MYC4                                                <-------PIF5                        --------->DAG2                                             <---------ANAC46                      ---------->DOF2                                             <---------ANAC58             >>>>>>>>>ARR1             -       <-----------GT1                  <---------ANAC58                  >>>>>>>>>ARR2<---------ANAC58  --------->AHL20(2)                    <---------ANAC58                <---------TOE2(3)  <---------ANAC58  <---------AHL20(2)         --------->ANAC46<---------ANAC58           <---------YAB1 <---------ANAC58 <---------AHL20(2)<----------DOF2<---------ALFIN1--------->ZAT18       <---------TOE1(3)  <---------ANAC58 ------>AHL20(2)<-----------GT1 ----------->RAV1(1)----------------->AGL1 <------------CBF <---------ANAC46 ------YAB1  --------->AHL20(2)--------->ANAC46 ------->MYC2 ---------->DOF2<---------MYB46(3)  -----   ttatttatttatcaattttttctttctatataagcgacactcgcttggcatgtgcactttagggaaagtatgttaagattgttgataaagcttgcgagaa  2987100                                                                   <---------AHL20(2)                                                                 <---------AHL20(2)                                                                 --------->AHL20(2)                                                                --------->YAB1                                                               <---------YAB1                                                              --------->AHL20(2)                                                              <---------AHL20(1)                                                              <---------AHL20(2)                                                              --------->AHL20(1)                                                        --------->At5g28300                                                       ------->GAMYB                 <---------ANAC58                      ----------->GT1          <------------CBF                          --------->MYB52(1)                  --------->ICU4  <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       --------->WOX13(1)--------->AHL20(2)    --------->ANAC55(2) --------->At4g35610      <-----------GT1<------ZmHOX2a(2)   --------->YAB1  ----------->TBP        - <---------At4g35610 <---------ANAC58    ------------>CBF    <---------AHL20(2)<---------AHL20(2)<--- -------->MYB52(1)   <---------ANAC58   <---------ARR11(3)  --------->ICU4   --------->AHL20(2) ----- ---->GLK1(1)    <---------ANAC58       --------->ARR11(3)>>>>>>>>>GT-2    <-----------TBP  <--------   atcaactgatggtattgttgtttgcttaatacgatttgcgaagatcaatctctataacggtaattatattaatatgcatatatatatgtaatatttcatt  2987200      --------->ANAC58      --------->ANAC58      --------->ANAC46                                                        <---------MYB46(3)   <---------ARR14(2)                                                         <------MYB83   --------->ARR14(2)                                                         <------MYB46(1)  ------ ---------->TBP                       <---------TOE2(3)               <---------ANAC58        ------- ------AHL20(2)                 --------->ATHB12                      <---------ANAC58      --------- ---->AHL20(2)            ------------>CBF          <----------DOF2  <---------MYB46(3)  <---------TOE2(3) -AHL20(2)             --------->GLK1(1)    <-----------GT1       <------------CBF <----------DOF2   ttatatatacgcagataataagagcatttccaattcatttgatgtttcacaagtctttgttgatacaaaattggttgagttggttctttttaagaaaagg  2987300                                                                          --------->YAB1                                  ---------->DOF2                         <---------ICU4                           <---------YAB1                                <---------ATHB51                         --------->YAB1                                <---------------AGL15                         <---------ICU4                                --------------->AGL15        <                        --------->AHL20(2)                        --------->At4g35610               -                        <---------AHL20(2)                 --------->ATHB12 <---------YAB1         <-                        <---------ATHB51                  --------->ICU4 <---------ATHB12      ------      <-----------GT1   --------->ICU4                    <---------YAB1 --------->ICU4    <---------YAB1     <-----------GT1  --------->YAB1               --------->ZAT18<---------ZAT2        --------->ICU4 ----->GT1          --------->AHL20(2)             --------->ZAT14--------->ZAT2 <xxxxxxxxxxxxxxxxxxx -->DAG2        --------------->AGL15              <---------ZAT14<---------At4g35610 ---------->DOF2 ->DOF2         =======================================================================MADS_MADS <---   taaatttttatcccatttccaaaaaaataattactgaaaagatgggactcaagtagactgatgatgggagctgcaattatgagaaatggaaagatgataa  2987400                                                                                   <---------ANAC58                                                                                   <---------ANAC46        <---------ANAC46                                                           <---------ANAC58 ---------ARR11(3)                                                               --------->ZAT14 -------->ARR11(3)           ----------->GT1                                     --------->ZAT18 -----ZmHOX2a(1)          --------->CCA1(2)               ----------->HVH21      <---------ZAT14 ---->DOF2      --------->At4g35610                      <---------WOX13(1)     --------->ALFIN1 xxxxsmallRNA(s2)    ---------->DOF2                  <---------YAB1 --------->ARR11(3) ------TOE2(3)<---------WOX13(1)              <------ZmHOX2a(1)      <---------ARR11(3)        <-----   aggatttttggagtagattgctgaaaagagatggaaatatttgcataaggaaattgatgactgacattgaagatgttaagaagtggagtgagaagaagga  2987500                                      --------->WRKY18(1)                                     <-----------HVH21                                    <------MYB83                                    <------MYB46(1)                                   <---------AtMYB61                                   --------->MYB59                                   <---------MYB46(3)                                  <--------P                                 <-------GAMYB                       <------ZmHOX2a(2)              -                            <---------At4g35610                     <---------ARR11(3)           ----           <---------ANAC46 --------->At4g35610                     --------->ARR11(3)         ------         <---------ANAC46   <---------ZAT2                  ---------->DOF2                    <-----      <---------MYB52(1)    --------->ZAT2              <----------ID1                         ------ --------->GLK1(2)     ----------->HVH21                --------->ANAC58  --------->AHL20(2)   <----- -ZmHOX2a(1)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->ANAC58  <---------AHL20(2)   ------   cataatccgttttgtgtatatttgtgtgatagctgggttggtcatggctacgagtgaaacgaaaaagatagatcatttatatatcaagatggtaatggat  2987600                                                                       --------->ARR14(2) -------->YAB1                                                         <---------ARR11(3) -->ZmHOX2a(2)                                                         <---------ARR14(2) ->TEIL <-------TEIL                                             --------->ANAC58 ----ARR11(3)                              --------->GLK1(2)     --------->ANAC58 --->ARR11(3)    <---------YAB1        --------->YAB1          ---------->DOF2 ----ARR14(2)  --------->YAB1         <---------YAB1         <---------YAB1                ---------- --->ARR14(2) --------->ICU4  ---------->DOF2              --------->YAB1              >>>>>>>>>MYB2   cttcataacgttcgtaattatccttggggtcttaaagcttatgataatctactaaattgtatcatgaaagcaatatatgctctgaagaaaaccaaaagct  2987700                                                                 <---------YAB1          --------->ARR14(2)                                   --------->ATHB12          <---------GLK1(2)   --------->CCA1(2)     --------->LBD16     <---------AtLEC2        <---------ARR14(2)    --------->HSFB2a(2)              <XXXXXXXXXXXXXXXX   --------->HSFB2a(2)       --------->ARR14(2)    <---------HSFC1(1)    <----------ARF1   <---------HSFB2a(2) --------->ANAC46    --------->ANAC58   <---------YAB1  --------->ICU4  <---------LBD16 --------->ARR14(2)       --------->ANAC58   <------ZmHOX2a(2) <---------GLK1(2) >DOF2    <---------ARR14(2) --------->ARR11(3)    <---------HSFB2a(2) ----------->GT1           <---   atgttctggatggattctcatatacacttcagatatgggtgatggaagcaattccagaaattggatcattgttgggagaaaagattagcactgaattcaa  2987800                                                                           --------->AHL20(2)                                                                           <---------AHL20(2)                                         --------->YAB1              <-----------HVH21      <---------HSFB2a(2)             --------->GLK1(1)             --------->ANAC58      ------>ZmHOX2a(1)              --------->ARR11(3)             --------->bZIP60(2)  --------->ARR14(2)        --------->At4g35610                <---------ETT(2)  --------->ARR11(3)       --------->ALFIN1<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------ARR14(2)    --------->DAG2<---------GLK1(1)        --------->ZAT14  <---------ARR11(3)  ---------->DOF2<---------ARR11(3)        --------->ETT(2) XXXXMIR397A   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <---------ZAT14                      < ------ATHB12  <---------YAB1    ---------->DOF2 <------ZmHOX2a(1)  --------->ANAC58        <--------   tgaaggtcctcgatgttctaattggaaaggtgctgcaaagatatcatatgaggacatcatctctgtggacaggtcatttaaatcacatgtaagtttacag  2987900  Previous    Next  AGI:  At2g07185.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 2986181    to: 2987299    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g07190.1    Description:  similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G45570.1); similar to hypothetical protein 27.t00109 [Brassica oleracea] (GB:ABD65088.1); contains InterPro domain Region of unknown function DUF1985 (InterPro:IPR015410) Range:  from: 2987364    to: 2988942    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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