Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                --------->YAB1                                                           ------->TEIL                                                      ------>MYB46(1)                   ------>ZmHOX2a(1)                                                      ------>MYB83                      =============                                                    <---------MYB59            ================HOX2a_HOX2a                          ------>MYB83           <-----------GT1--------->ICU4<---------ARR11(3)    <                          ------>MYB46(1)     --------->ANAC55(2)             --------->ARR11(3)    -              ----------->RAV1(1)             <---------ANAC55(2)    --------->MYB52(1)--------->TOE2(3)   <---------YAB1       --------->TOE1(2)     --------->ANAC55(1)<---------ICU4<------ZmHOX2a(2)    -   tatacatgattcaaaaccacatataacctacaaaaacaattgaacaacatgtaacctaatgaactcataatcaacgaagagatcatattcctcagaatca  2590100                                                                                                    -                                                                                                    =                                                                                                   --                                                                                                   <-                                                                                                  <--                                   <-----------GT1                                                ---                                <---------ICU4                                                    ---                               --------->ICU4                                                   -----          ------>ZmHOX2a(2)   <---------AHL20(2)       <------ZmHOX2a(2)                     <------- ================HOX2a_HOX2a --------->YAB1      --------->TOE1(2)                      --------->ANAC58 ---------MYB59           --------->YAB1  <------ZmHOX2a(2)                <-----------GT1 ---------- -------->TOE1(3)       ----------->GT1  --------->ARR11(3)             <---------ICU4  --------->ANAC58 -------->TOE2(3)    <---------ATHB12    <---------ARR11(3)         <-----------GT1     --------->ANAC46   aacctaaattgatctaatttcaaatcaagtataaaaattacaagatcaaaacttgcgatcatcgaatatttcactaattacaaactcaataagcaacaca  2590200           --------->ANAC58 ----------->HVH21                         --------->LBD16 <---------ETT(1)                         <---------ANAC46 ----->ZmHOX2a(2)                        <---------LBD16 ====================================HOX2a_HOX2a ------->CCA1(2)                       --------->TOE1(2)                                ------------- -----ZmHOX2a(2)                       --------->TOE2(2)                       --------->ATHB12 -------ARR14(2)                      ----------->RAV1(2)    --------->LBD16<---------ICU4      ----- ------>AGP1                         --------->GLK1(2)     <---------HSFB2a(2)<---------YAB1   ------ ------>ARR14(2)                     ------->TEIL   ---------->ID1          --------->YAB1    ------- ------>ARR10          ---------->DOF2<---------HSFB2a(1)  --------->HSFB2a(2)--------->ICU4 -------- --ALFIN1--------->CCA1(2)          --------->ARR11(3)  <----------DOF2    --------->ICU4<----------- ->RAV1(1) --------->ANAC58   <------ZmHOX2a(1)    <-----------GT1       --------->YAB1 -------------   gatccgacaagagacgaaatcgagagaaaggaggataagaacctgcgggagtttttcgctttccgaagattgaattcatcatgattcaataccgaaaaag  2590300       --------->TOE1(2)     --------->GLK1(2)     --------->ARR14(2)                     <------NtERF2     <---------ARR14(2)                    ------>NtERF2 ---->AGL1                                <---------DEAR3(1) ------>GT1                               <----------ID1 --->DAG2                      --------->ANAC58 -->DAG2                    <---------WRKY18(1)                                             --------- -->DOF2           <---------HSFB2a(2) <---------TOE2(3)                ----------->GT1   --------->AHL20(2) ----AGL15         --------->HSFB2a(2)---------->DOF2             ------>ZmHOX2a(2)       <---------AHL20(2) ---->AG      <----------DOF2  --------->ANAC58            --------->TOE2(3)            <---------YAB1   gtgaacaaatctgggacttttgtagaagcttgaacgaaattaaggcgacgaattagcaaaacctttgatcggagttgaaaaatcgagattatttttatat  2590400                                       ---------->DOF2                                    <---------ANAC55(2)                             --------->ANAC46                             --------->ANAC58                          --------->ARR14(2)         --------->HSFB2a(1) <---------ANAC55(2)         --------->At4g35610 --------->ANAC55(2)         <---------At4g35610 --------->ANAC58                                                   <----         --------->ZAT2   <---------ARR14(2)                                                    -----         <---------HSFB2a(1)<-------TEIL--------->DAG2                                         <-----         <---------HSFC1(2)--------->ARR14(1)      <---------AHL20(2)  <---------ANAC58      --------         --------->HSFC1(2)--------->CCA1(2)     <------------------------ANAC81           ----------        ------->TEIL      --------->ARR11(1)   --------->ATHB12        <---------ANAC58    ----------   --------->CCA1(2)     --------->CCA1(2)    --------->ICU4     <----------DOF2     --------->AHL20(2) >AHL20(2)       <---------DEAR3(1)>>>>>>>>>>AtSR1*TSS    <-----------GT1            <---------AHL20(2)   agaagagacgaagcttccttcggtgagagatacgaaacgcgtaaaggaatgatttttttttttcttccttttttcttgagaagtttttttaatatcaatt  2590500                                                                             --------->YAB1      --------->GLK1(2) <------------CBF                                    <---------ATHB12    --------->MYB46(3)<---------YAB1                                 <----------DOF2   ------------>CBF   <---------TOE2(3)                        --------->ARR14(2) -----ICU4       <---------ICU4                                <---------ARR11(3) ---->YAB1       --------->ATHB51                              --------->ARR11(3) ----ATHB51      <--------HAHB4            <----------DOF2    --------->RVE1(1)                <----- ->WOX13(1)     --------->ICU4          <-----------GT1------>ZmHOX2a(1)  <-----------GT1     ------- -->CBF         <---------YAB1       --------->YAB1   --------->TOE2(3)  <---------AHL20(2)   <------ ------->AGL3 --------->YAB1        --------------------->WRI1--------->CCA1(1)              <-------TEIL   atagcaacaatctttctcataattaacattggagacctcttataacttttggacctccttaaaaatatcttctttttaatcatactacgatgatgttcgt  2590600                   ------->TEIL             --------->LBD16      ------>ZmHOX2a(2)     <------ZmHOX2a(2)                                                       <---------AHL20(2)    <---------ARR11(3)                                                     <---------YAB1    <-----------ARR10                                                     <---------AHL20(2)    --------->ARR14(3)                                                    <---------AHL20(1)    <---------ARR14(3)                                                  <---------YAB1    --------->ARR11(3)                                               <---------AHL20(2)            <-    <---------ARR14(2)                                               <---------YAB1                --    --------->ARR14(2) <---------MYB52(1)                      --------->AHL20(2)                ----    <---------AGP1<-----------GT1                              <---------AHL20(2)                <--- --GAMYB   <---------LBD16                                  --------->AHL20(2)                  <---- -->MYB52(2)<---------HSFB2a(2)                             <---------AHL20(2)    <----------DOF2---- ---MYB46(3)--------->HSFB2a(2)                      ---------->DOF2<---------AHL20(1)       <-------   tgtgaagatctcatccggatgaaccgttcttagaacatgggcaatatagtatcacaaaagaattttttaatattattattttttctttaactcaactttc  2590700           ------->TEIL   --------->YAB1 --------AHL20(2) ------->AHL20(2) ----------->AGL15            <---------TOE2(3) ------------AGL15   <---------ZAT6        ----------->RAV1(2) -------------AGL3<---------ICU4        <-------TEIL                    ----------->GT1  <---------GLK1(2) ----->TOE2(3)   --------->ICU4 <------ZmHOX2a(1)                --------->TOE1(2)   ---------->DOF2 ---DOF2   <---------TOE2(2)  <---------TOE1(3)      <---------YAB1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   attaattagaacgtatgtaatcagtgtgaattaaggatgaaatacatctggggacataatagaagaacataagatggaaaaaacccaaaaagaatttcaa  2590800                                                              <---------AHL20(2)  <xxxxxxxxxxxxxxxxxx                                                              --------->AHL20(2)------->GAMYB                                                        ----------->GT1      <-----------GT1                                                     --------->ANAC46       <-----------GT1 <--------              ----------->GT1                        --------->ANAC58      --------->AHL20(2)     ---     <---------AHL20(2)             <<<<<<<<<<MYB80  --------->ANAC58 <---------ZAT18      --------->AHL20(2)    <---------AHL20(2)     <---------ATHB12         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------AHL20(2)   ctattttttatttggacgtttaatatccaatcgtttttggtttgaagataaatacacgaagtaataaaactgtgcaatttaacacccagacaattaaatg  2590900                                  <---------AHL20(2)                                 --------->AHL20(2)                                               <--                                 <---------AHL20(2)                                              <---                                 --------->AHL20(1)                                              ----                              --------->YAB1                                                  <------                  <------ZmHOX2a(2)                                                          <-------       --------->YAB1--------->YAB1                                     <---------AHL20(2)   --------   xxxxxxxxxxxxxxxx>smallRNA(i)  <---------AHL20(1)              <-----------GT1        --------->YAB1  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            --------->TOE2(3)    <---------AHL20(2)<---------ARR11(3) xxxxxsmallRNA(le3)------>ZmHOX2a(2)              --------->ANAC46     --------->AHL20(2)--------->ARR11(3) -AHL20(2)       <---------ARR11(3)               --------->TOE1(3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -------->GT1    --------->ARR11(3)           <-----------GT1   --------->AHL20(2)     <---------YAB1   ttgttattttcatactcacgatctcataacaaaaataaaattccaattttacccttaacatctcaattaactattaatttttagatggtatgatattaat  2591000  Previous    Next  AGI:  At2g06530.1    Description:  VPS2.1. similar to VPS2.3 [Arabidopsis thaliana] (TAIR:AT1G03950.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80030.1); contains InterPro domain Snf7; (InterPro:IPR005024) Range:  from: 2588542    to: 2590450    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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