Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      <---------MYB52(2)        -------                    <---------YAB1                             --------->TGA1a               <-------                --------->CCA1(2)                            <---------ANAC58               <--------          ----------->RAV1(1)                                <---------ANAC58              --------->YAB1          ------->GAMYB  <-----------GT1              --------->ZAT14        --------->At4g35610         --------->MYB46(3)                           <---------ZAT14   --------->YAB1   <---------WOX13(1)       <-----------GT1--------->WOX13(1)       --------->ANAC58=============================bZIP_DOF -------->DOF2 --------->ARR11(3)              --------->ANAC58<---------TGA1a   ---------->DOF2 -->DEAR3(1)   <---------ARR11(3)       <-----------GT1      <---------ANAC46<---------At4g35610   ccaaagaagtaaccacagatatatcattcaccattccacatttaacaacaagacaatgtagtggctcgtgactaacatgagcagaaagaagattgatgat  1708100                                                                                          --------->ATHB12                                                                                          <---------ICU4                                                                                          <--------ATHB1                                                                                          --------->YAB1                                                                                          -------->ATHB1                                                                                         --------->ICU4                                                                                         <---------YAB1                                                                                         <---------ATHB12    <---------ZAT14                                                                     ------>MYB46(1)    --------->ZAT18                                                                     ------>MYB83    --------->ZAT14              <---------GLK1(2)                 --------->MYB46(3)  --------->WOX13(1) -->YAB1                 --------->HSFB2a(2)                 ------>ZmHOX2a(1)        ------------>ATHB5 --YAB1           <---------GLK1(2)                  <---------ANAC58                 --------->MYB46(3) -TOE2(3)   <-----------GT1   --------->YAB1         <---------ANAC58                <------NtERF2   agtgactggactaatttccacattcttctcaaacatattcttgaaaacagtgatggcttcttcctgtaaaccactctggctataggcaccaatcattgta  1708200                                                            --------->ZAT14                                                            <---------ZAT14                                                            --------->At4g35610                                                            <---------At4g35610                                                            <---------ZAT18                                                      ------>MYB46(1)                                                      ------>MYB83                                                    <---------MYB59                <---------CCA1(2)                  --------->ANAC58                              ----             <----------DOF2                       --------->ANAC58                   --------->ANAC58     --------->GLK1(2)                            ------->TEIL<---------ZAT18         --------->ANAC46  --------->ANAC58                           --------->At4g35610             --------->ANAC58    ----  --------->ANAC46                           <---------At4g35610             --------->ANAC58    <---  --------->ANAC58  <----------DOF2          ----------->RAV1(2)  <----------DOF2     --------->ANAC58   ttccaagaaactgtgcttttatctttcatttctctaaacaagacttctgctgaacccaactctgcacactttgagtaaaacgaaatcaacgcattcttca  1708300                                               ------>ZmHOX2a(2)                                              --------->GLK1(1)                                              <------ZmHOX2a(2)                                              <---------GLK1(1)                                             <-----------ARR10                                             <---------ARR14(2)                                             --------->ARR14(3)                                             <---------ARR11(3)                                             --------->ARR11(3)                                             --------->ARR14(2)                    ----------->GT1                                             <---------AGP1                       --------->DAG2    --------->ARR14(2)           --------->REM1(1)                               --------->DAG2    <---------ARR14(2)           <---------ALFIN1                               ---------->DOF2    --------->GLK1(2)          ----------->RAV1(1)                          <---------------AGL15 ----->At4g35610             --------->At4g35610                          --------->ZAT18 ------->RAV1(2)             <---------At4g35610          --------->CCA1(2)<-----------------AGL1 ------At4g35610       <----------DOF2       --------->AGP1<-------TEIL   <---------ZAT18   cctgagaatccaactcaaggccagactttgcagcaacaccatgaacagatctcccttgagatacaaaaccacattgtccacaaaaaggtaacaaattcac  1708400                                                                                 --------->ARR14(2)                                                      --------->ANAC58      <---------ANAC46                                                      --------->ANAC58      <---------ANAC55(2)             ----------->GT1                          --------->ANAC46      ----------->GT1          --------->At4g35610                  <---------HSFC1(2)           <---------ANAC58 --------->ZAT14                            ---------->DOF2                 <---------ANAC58<-------- <---------ZAT14                      <---------YAB1 <---------LBD16<-----------GT1   --------->ANAC46 --------->ZAT18                 <---------ICU4--------->HSFC1(2)--------->YAB1  <---------ARR14(2)   aagtgtagtagcagatggagaaaacccttgctgaagcattacgataaaaagcttccacgcatcacactcataaccatttcgtgaatacccacaaatcaat  1708500                                                              -------->P                                                          --------->ANAC58                                                          --------->ANAC55(2)                                                          --------->ANAC46                                                          --------->ANAC55(1)                                                          <---------ANAC55(2)                                                       <---------MYB52(1)              ------->TEIL                      --------->ZAT14                                     <             <---------CCA1(2)                  <---------ZAT14                                     -       --------->MYB46(3)                       <---------ZAT18                                     <     --------->ANAC46                           --------->ZAT18                            --------->ARR11(3) -ATHB12--------->MYB52(1)             ----------->RAV1(1)--------->ANAC58                 <---------ARR11(3)   gcattccaaacaactgtatctctctcaggcatttcatcgaacaacatttgtgcactcgttacgcaacccttcttcaagtagagattaagaagagatgttt  1708600              <------ZmHOX2a(2)              <---------ATHB12          --------->MYB46(3)          --------->DEAR3(2)         ------->TEIL      --------->ANAC46   --------->ARR14(2)   <---------ARR14(2) ---------ANAC55(2)                                                                       <---------ANAC46 -------->ANAC55(2)                                                   <------------CBF    <---------ANAC58 ---------ANAC46   <---------ARR11(3)                   ----------->GT1   ---------->DOF2 <---------ANAC58   tcacgtatacgaaccgatcaagacctgattttgtgagatgggtttggacttgttcgacttgtaacttgaaggaattgaaagaggtagtagtggcttggag  1708700                                                              <---------WOX13(1)                                                             <------------CBF                                                            --------->ATHB12                                                 --------->ANAC58                                                 --------->ANAC58                                                 --------->ANAC55(1)                                                 <---------ANAC55(2)                      <------MYB83 --------->MYB52(1)      <---------YAB1                      <------MYB46(1)            --------->ANAC46                      <---------ANAC46           --------->ANAC55(2)                 --------->ATHB12  <---------ARR14(2)  <---------ARR11(3)                --------->ICU4    <------ZmHOX2a(1)    --------->ARR11(3)                      <-----         ----------->GT1<---------REM1(1)       <---------LBD16                          --------->CCA1(2)  --------->CCA1(2)  <---------AtMYB61         --------->MYB52(1)               <-----------GT1------   aaagatagacatagtgaaatgatttggtgtaagagaggaacggagtaagtcacggaagatagtgattggagaagaagagatttcaccatggatacaagat  1708800                                               <------MYB83                                               <------MYB46(1)                                      --------->CCA1(2)                                    <XXXXXXXXXXXXXXXXXXXXMIR4240                            --------------->AGL15                                            <-------                            <---------------AGL15                                            <-------                           ----------------->AGL3                                         <----------                       <---------ARR11(3)     --------->MYB46(2)               ------>ZmHOX2a(1) <--- ----ARR11(3)          --------->ARR11(3)     --------->MYB59       --------->ZAT14  <----------DOF2< --->ARR11(3)      ---------->DOF2 <---------ZAT6 ---------->DOF2   <---------ZAT14  <---------DAG2 -   tttagtagagaatggaagtaagaaaggtctctatatagagttatgggtttggtaatgcgcatactatctctgttctgtctcctctagctttatttccttg  1708900        <---------YAB1      --------->ATHB51      <--------HAHB4                                                                              ---      -------->ATHB1                                                                           <-----      --------->ATHB12                                                                       <-------      <---------ICU4                                 --------->ANAC58                --------->AHL20(2) --ANAC58   --------->ARR11(3)                       --------->ANAC58                <---------AHL20(1) --ANAC58--------->YAB1                        ------->TEIL                          --------->AHL20(1) -GT1--------->ICU4                           <---------CCA1(2)                      <---------AHL20(2) --------RAV1(1)                        <---------ANAC46                        --------->At5g28300 ---------ANAC46                        <---------ANAC58                       ----------->GT1 <----- -------->ETT(1)  <---------ANAC46      <---------ANAC58              --------->MYB52(1)    <--------   tgtcggaattattagaacttgtgtatatcaagttgacaaatgacttgtgtatctcaagtcaatgttttgaactatcgactactgtaatttattgttactg  1709000  Previous    Next  AGI:  At2g04860.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G21300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61340.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 1706784    to: 1708532    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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