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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                     ---------->DOF2
                                                              --------->ANAC58
                                                              --------->DAG2               <--------
                                                              --------->ANAC58             ---------
           --------->TOE2(3)                                  --------->ANAC46          ---------->DOF2
           --------->TOE1(3)      --------->REM1(1)          ---------->DOF2    --------->TOE2(3)
 ---------->DOF2         ---------->DOF2                 ------>ZmHOX2a(2)      <----------DOF2    -
 
agaagaaagagataccttagagtttagccaaagggcttcatcaaattcaccagggtttgatccataaggcacaaaagcagcaactttagaagaaagctga  1584300
                                                                                                  --
                                                                                                  <-
                                                                                                 ---
                                                                                               <----
                                                                                             ------>NtERF2
                                                         <---------ARR14(2)              --------->ANAC58
                                                         --------->ARR14(2)              --------->ANAC58
                                                        --------->WOX13(1)             <-----------GT1
        <-----------GT1                     ========================HOX2a_HOX2a      --------->AHL20(2)
-At4g35610                                  <------ZmHOX2a(2)                        <---------AHL20(2)
>At4g35610 <----------DOF2---------->DOF2  <---------ARR11(3)           <---------GLK1(2)--------->ANAC46
--------->DOF2 ---------->ID1              --------->ARR11(3)------>ZmHOX2a(1)    --------->WOX13(1)
 
tcaaaagtatataactttgtctcttcatcaaaagacttcatcttgagatcatcaagagtcaatcctctaatcccacattctccatcaattaaacgcctcc  1584400
        --------->ANAC46
        --------->ANAC58
        --------->ANAC58                       <------ZmHOX2a(1)
----->MYC3                                 ------>MYB46(1)
------MYC3                 <-----------GT1 -------->P
------>ANAC46         --------->ZAT14      ------>MYB83                                            -
-----ALFIN1          --------->ALFIN1      --------->MYB52(1)                                      <
 
acgttgtttcaacgcctctaccaagtggagtcaccatgcctagacctacaggaacaatgtcgaatcagagaaattacagagataagtatatgtgaataca  1584500
                                                                                        ------>NtERF2
                                                                                      <------NtERF2
                                              --------->ATHB12                        --------->ATERF1(1)
                                 --------->ANAC46                               <---------At4g35610
                            --------->MYB46(3)--------->YAB1                    <---------LBD16
<---------AtLEC2      ----------->HVH21     <---------WOX13(1)      ================================
------>TEIL         ----------->GT1    <---------ANAC46            <---------REM1(1) <---------ATERF1(1)
-------TEIL   <------ZmHOX2a(1)<---------ALFIN1        >>>>>>>>>TBF1---------->DOF2 <---------DEAR3(1)
 
tgtacatggagagagaaggagaccagtgacaacaacacggcgatgtgaatgataagaagaagaagtagagatgaagcggtttaagcggaggcgacttgcg  1584600
                                                       <------NtERF2
                                                      ------>NtERF2
                                                   <---------ATERF1(1)
                                                 --------->ATERF1(1)
                                            <---------ANAC46
         --------->LBD16           ----------->HVH21--------->ATERF1(1)
        --------->ANAC46           --------->DEAR3(1)<---------DEAR3(1)
       <---------LBD16         <---------At5g28300----------->HVH21
     --------->ETT(2)       <-----------HVH21   <---------ATERF1(1)
<---------TGA1a         <------NtERF2    ----------->HVH21
<---------O2           ------>NtERF2     ----------->TGA1           <----------DOF2            <----
--------->TGA1a       --------->ETT(2)  <-----------HVH21   --------->ATHB12              --------->AHL20(2)
--------->O2          <---------ETT(2)<---------DEAR3(1)   <---------YAB1           *TSS  <---------AHL20(2)
=================================================MYC_MYB   --------->ICU4         <---------LBD16
==========bZIP_DOF <---------REM1(1)------------>AtMYB77<---------DEAR3(1)    <---------AHL20(2)  --
 
ctcaagtgtctacggagattagatgtcgccatttcacagcgacggtgacggagacgacggcgatgatgggactttttagaatttatcagggatttaaatt  1584700
                                                               <------------CBF
                                                       ----------->GT1
                                                      --------->RAP2.6(2)
                                                 ---------->DOF2<---------WOX13(1)
                       ----------->GT1      <---------ATHB12 --------->AHL20(1)     --------->DOF5.7(2)
                    --------->MYB52(1)     ------>MYB83--------->LBD16  --------->AtLEC2
      <---------ARR11(3)                   --------->MYB52(1)<---------AHL20(2)    --------->TOE1(3)
      --------->ARR14(2)                   ------>MYB46(1)   --------->AHL20(2)    --------->TOE2(3)
   --------->HSFB2a(2)<---------ATHB12  ------------>CBF<------NtERF2 <---------ANAC58             -
 ------>ZmHOX2a(1)--------->MYB46(3)    --------->MYB46(3)  --------->AHL20(2)<---------AHL20(2) <--
---TEIL--------->CCA1(2)       --------->YAB1   <---------MYB52(1) <---------GLK1(2)<---------MYB52(1)
-------->ID1      ------------>CBF    <-----------GT1<---------LBD16  <---------ANAC58         -----
 
cgtcctctagatatgaagttaaccaatggtttaatcatatttaaccaatcggttaagccggaaattaattgattcttgcaaataatcgttaaccagactg  1584800
                                                                                             -------
                          <----------DOF2                                                   <-------
             <---------ZAT14                                                               <--------
             --------->ZAT18                                                               <--------
  --------->YAB1          <---------DAG2                                                 --------->DEAR3(2)
  <---------ICU4      <------ZmHOX2a(1)      ----------->RAV1(1)                        --------->SPL7
 <---------ATHB12 <---------ZAT14         ----------->RAV1(1)                    <---------ALFIN1
-------->YAB1--------->ZAT14           --------->ANAC46        <-----------GT1  --------->ANAC46   -
-------WOX13(1)   --------->ZAT14      --------->ANAC58     --------->MYB52(2)  ----------->HVH21 --
---->ATHB12  <---------ZAT18           --------->ANAC58 ----------->GT1       ----------------->AGL1
 
attaatcatcaaaccgtgcactgtaggagcttttcgagtcaaacgcgacaacaatggaatggttatttacaatgttttcatgcccgactcggaccgtccg  1584900
                                                      <---------ETT(1)
                                                      ----------->HVH21
      <--------P                         --------->DAG2                         ----------->RAV1(1)
    <---------MYB46(3)         --------->LBD16xxxxxxxxxxxxxxxx>smallRNA(i)   <xxxxxxxxxxxxxxxxxxxxxx
-->SPL7                      <---------LBD16  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
--MYB52(1)                   ----------------->AGL1   --------->ANAC46       --------->ANAC46
-SPL7 <---------WOX13(1)   <-----------GT1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
---HVH21   ------>ZmHOX2a(2)<-----------GT1  ----------->GT1               <-----------GT1
---------->HVH21 ------>ZmHOX2a(2)       xxxxxxxxxxxxxxxx>smallRNA(i)----------->GT1
------->SPL7<xxxxxxxxxxxxxxxxsmallRNA(i)---------->DOF2              <----------ID1
 
gtccgactggttgatcgtgatccgaacatttttccggtttggataaagtgctaaaacccgacaagttcaaaaacgaaaaaaccccacaaaaactcaccat  1585000
                                 ----------->HVH21
                                 --------->ALFIN1
                               <---------ANAC58
                               <---------ANAC58
                               <---------ANAC46                                                   <-
                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                          <---
                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                         ----
                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                         <---
           <xxxxxxxxxxxxxxxxsmallRNA(i)                                                        <----
      xxxxxxxxxxxxxxxx>smallRNA(s)   <---------DEAR3(2)                                     --------
      <---------bZIP60(2)      <-------GAMYB                                                <-------
      <xxxxxxxxxxxxxxxxsmallRNA(i) <------NtERF2                                   <-----------GT1--
    <---------WRKY18(1)       xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           <------ZmHOX2a(1)<------
   ----------->HVH21xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          --------->AHL20(1)      ---------
 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                             --------->AHL20(2) <----------DOF2
xsmallRNA(l2) ------->TEIL <-----------HVH21                       <---------AHL20(2) <---------DAG2
 
taacccatgacctggtgaaccggttgaaccagtcgggtgtcggttttaaaaaactctcttcattttgaaataaaatataggattttatactttatttaat  1585100
        --------->AHL20(2)                                         ------>NtERF2
       --------->AHL20(2)                                          <---------RAP2.6(3)
--------YAB1                                                      <---------ANAC58
-----HAHB4                                                        <---------ANAC46
----->YAB1                                                        <---------ANAC58
------ICU4                                                      <---------ZAT18                    <
-----ATHB12                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         <
->AHL20(2)        ----------->GT1                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <x
--AHL20(2)        <---------MYB46(3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <xxx
------->ICU4    <---------At4g35610     <---------AHL20(2)      --------->ZAT14 xxxxxxxxxxxxxxxxxxxx
-----GT1<---------AHL20(2)             --------->AHL20(2)--------->ZAT14       <---------AHL20(2) <x
>AHL20(2)       <-------GAMYB         <---------AHL20(2) <---------ZAT14      --------->AHL20(2)<xxx
 
catttttaaaaaaaatttcagttgttaaactcatttgatattttaaatttcgacgaagacttcacagtgccgtcttaaaaaataaatcgaatggtgagtg  1585200
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AGI:  At2g04540.1   
Description:  3-oxoacyl-(acyl-carrier-protein) synthase II, putative. Identical to 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial precursor (KAS) [Arabidopsis Thaliana] (GB:Q8L3X9;GB:Q9SJB7); similar to FAB1 (FATTY ACID BIOSYNTHESIS 1), fatty-acid synthase [Arabidopsis thaliana] (TAIR:AT1G74960.1); similar to FAB1 (FATTY ACID BIOSYNTHESIS 1), fatty-acid synthase [Arabidopsis thaliana] (TAIR:AT1G74960.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO24089.1); contains InterPro domain Beta-ketoacyl synthase, N-terminal (InterPro:IPR014030); contains InterPro domain Beta-ketoacyl synthase, C-terminal (InterPro:IPR014031); contains Int
Range:  from: 1581413    to: 1584685    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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