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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
---------->
DOF2
--------->
ANAC58
--------->
DAG2
<--------
--------->
ANAC58
---------
--------->
TOE2(3)
--------->
ANAC46
---------->
DOF2
--------->
TOE1(3)
--------->
REM1(1)
---------->
DOF2
--------->
TOE2(3)
---------->
DOF2
---------->
DOF2
------>
ZmHOX2a(2)
<----------
DOF2
-
agaagaaagagatac
cttagagtttagccaaagggcttcatcaaattcaccagggtttgatccataaggcacaaaagcagcaactttagaagaaagctga
1584300
--
<-
---
<----
------>
NtERF2
<---------
ARR14(2)
--------->
ANAC58
--------->
ARR14(2)
--------->
ANAC58
--------->
WOX13(1)
<-----------
GT1
<-----------
GT1
========================
HOX2a_HOX2a
--------->
AHL20(2)
-
At4g35610
<------
ZmHOX2a(2)
<---------
AHL20(2)
>
At4g35610
<----------
DOF2
---------->
DOF2
<---------
ARR11(3)
<---------
GLK1(2)
--------->
ANAC46
--------->
DOF2
---------->
ID1
--------->
ARR11(3)
------>
ZmHOX2a(1)
--------->
WOX13(1)
tcaaaagtatataactttgtctcttcatcaaaagacttcatcttgagatcatcaagagtcaatcctctaatcccacattctccatcaattaaacgcctcc
1584400
--------->
ANAC46
--------->
ANAC58
--------->
ANAC58
<------
ZmHOX2a(1)
----->
MYC3
------>
MYB46(1)
------
MYC3
<-----------
GT1
-------->
P
------>
ANAC46
--------->
ZAT14
------>
MYB83
-
-----
ALFIN1
--------->
ALFIN1
--------->
MYB52(1)
<
acgttgtttcaacgcctctaccaagtggagtcaccatgcctagac
ctacaggaacaatgtcgaatcagagaaattacagagataagtatatgtgaataca
1584500
------>
NtERF2
<------
NtERF2
--------->
ATHB12
--------->
ATERF1(1)
--------->
ANAC46
<---------
At4g35610
--------->
MYB46(3)
--------->
YAB1
<---------
LBD16
<---------
AtLEC2
----------->
HVH21
<---------
WOX13(1)
================================
------>
TEIL
----------->
GT1
<---------
ANAC46
<---------
REM1(1)
<---------
ATERF1(1)
-------
TEIL
<------
ZmHOX2a(1)
<---------
ALFIN1
>>>>>>>>>
TBF1
---------->
DOF2
<---------
DEAR3(1)
tgtacatggagagagaaggagac
cagtgacaacaacacggcgatgtgaatgataagaagaagaagtagagatgaagcggtttaagcggaggcgacttgcg
1584600
<------
NtERF2
------>
NtERF2
<---------
ATERF1(1)
--------->
ATERF1(1)
<---------
ANAC46
--------->
LBD16
----------->
HVH21
--------->
ATERF1(1)
--------->
ANAC46
--------->
DEAR3(1)
<---------
DEAR3(1)
<---------
LBD16
<---------
At5g28300
----------->
HVH21
--------->
ETT(2)
<-----------
HVH21
<---------
ATERF1(1)
<---------
TGA1a
<------
NtERF2
----------->
HVH21
<---------
O2
------>
NtERF2
----------->
TGA1
<----------
DOF2
<----
--------->
TGA1a
--------->
ETT(2)
<-----------
HVH21
--------->
ATHB12
--------->
AHL20(2)
--------->
O2
<---------
ETT(2)
<---------
DEAR3(1)
<---------
YAB1
*
TSS
<---------
AHL20(2)
=================================================
MYC_MYB
--------->
ICU4
<---------
LBD16
==========
bZIP_DOF
<---------
REM1(1)
------------>
AtMYB77
<---------
DEAR3(1)
<---------
AHL20(2)
--
ctcaagtgtctacggagattagatgtcgccat
ttcacagcgacggtgacggagacgacggcgatgatgggactttttagaattta
tcagggatttaaatt
1584700
<------------
CBF
----------->
GT1
--------->
RAP2.6(2)
---------->
DOF2
<---------
WOX13(1)
----------->
GT1
<---------
ATHB12
--------->
AHL20(1)
--------->
DOF5.7(2)
--------->
MYB52(1)
------>
MYB83
--------->
LBD16
--------->
AtLEC2
<---------
ARR11(3)
--------->
MYB52(1)
<---------
AHL20(2)
--------->
TOE1(3)
--------->
ARR14(2)
------>
MYB46(1)
--------->
AHL20(2)
--------->
TOE2(3)
--------->
HSFB2a(2)
<---------
ATHB12
------------>
CBF
<------
NtERF2
<---------
ANAC58
-
------>
ZmHOX2a(1)
--------->
MYB46(3)
--------->
MYB46(3)
--------->
AHL20(2)
<---------
AHL20(2)
<--
---
TEIL
--------->
CCA1(2)
--------->
YAB1
<---------
MYB52(1)
<---------
GLK1(2)
<---------
MYB52(1)
-------->
ID1
------------>
CBF
<-----------
GT1
<---------
LBD16
<---------
ANAC58
-----
cgtcctctagatatgaagttaaccaatggtttaatcatatttaaccaatcggttaagccggaaattaattgattcttgcaaataatcgttaaccagactg
1584800
-------
<----------
DOF2
<-------
<---------
ZAT14
<--------
--------->
ZAT18
<--------
--------->
YAB1
<---------
DAG2
--------->
DEAR3(2)
<---------
ICU4
<------
ZmHOX2a(1)
----------->
RAV1(1)
--------->
SPL7
<---------
ATHB12
<---------
ZAT14
----------->
RAV1(1)
<---------
ALFIN1
-------->
YAB1
--------->
ZAT14
--------->
ANAC46
<-----------
GT1
--------->
ANAC46
-
-------
WOX13(1)
--------->
ZAT14
--------->
ANAC58
--------->
MYB52(2)
----------->
HVH21
--
---->
ATHB12
<---------
ZAT18
--------->
ANAC58
----------->
GT1
----------------->
AGL1
attaatcatcaaaccgtgcactgtaggagcttttcgagtcaaacgcgacaacaatggaatggttatttacaatgttttcatgcccgactcggaccgtccg
1584900
<---------
ETT(1)
----------->
HVH21
<--------
P
--------->
DAG2
----------->
RAV1(1)
<---------
MYB46(3)
--------->
LBD16
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxxxxxxxx
-->
SPL7
<---------
LBD16
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--
MYB52(1)
----------------->
AGL1
--------->
ANAC46
--------->
ANAC46
-
SPL7
<---------
WOX13(1)
<-----------
GT1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
---
HVH21
------>
ZmHOX2a(2)
<-----------
GT1
----------->
GT1
<-----------
GT1
---------->
HVH21
------>
ZmHOX2a(2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
----------->
GT1
------->
SPL7
<xxxxxxxxxxxxxxxx
smallRNA(i)
---------->
DOF2
<----------
ID1
gtccgactggttgatcgtgatccgaacatttttccggtttggataaagtgctaaaacccgacaagttcaaaaacgaaaaaaccccacaaaaactcaccat
1585000
----------->
HVH21
--------->
ALFIN1
<---------
ANAC58
<---------
ANAC58
<---------
ANAC46
<-
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
<---
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
----
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---
<xxxxxxxxxxxxxxxx
smallRNA(i)
<----
xxxxxxxxxxxxxxxx>
smallRNA(s)
<---------
DEAR3(2)
--------
<---------
bZIP60(2)
<-------
GAMYB
<-------
<xxxxxxxxxxxxxxxx
smallRNA(i)
<------
NtERF2
<-----------
GT1
--
<---------
WRKY18(1)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<------
ZmHOX2a(1)
<------
----------->
HVH21
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
AHL20(1)
---------
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
--------->
AHL20(2)
<----------
DOF2
x
smallRNA(l2)
------->
TEIL
<-----------
HVH21
<---------
AHL20(2)
<---------
DAG2
taacccatgacctggtgaaccggttgaaccagtcgggtgtcggttttaaaaaactctcttcattttgaaataaaatataggattttatactttatttaat
1585100
--------->
AHL20(2)
------>
NtERF2
--------->
AHL20(2)
<---------
RAP2.6(3)
--------
YAB1
<---------
ANAC58
-----
HAHB4
<---------
ANAC46
----->
YAB1
<---------
ANAC58
------
ICU4
<---------
ZAT18
<
-----
ATHB12
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<
->
AHL20(2)
----------->
GT1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<x
--
AHL20(2)
<---------
MYB46(3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxx
------->
ICU4
<---------
At4g35610
<---------
AHL20(2)
--------->
ZAT14
xxxxxxxxxxxxxxxxxxxx
-----
GT1
<---------
AHL20(2)
--------->
AHL20(2)
--------->
ZAT14
<---------
AHL20(2)
<x
>
AHL20(2)
<-------
GAMYB
<---------
AHL20(2)
<---------
ZAT14
--------->
AHL20(2)
<xxx
catttttaaaaaaaatttcagttgttaaactcatttgatattttaaatttcgacgaagacttcacagtgccgtcttaaaaaataaatcgaatggtgagtg
1585200
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AGI:
At2g04540.1
Description:
3-oxoacyl-(acyl-carrier-protein) synthase II, putative. Identical to 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial precursor (KAS) [Arabidopsis Thaliana] (GB:Q8L3X9;GB:Q9SJB7); similar to FAB1 (FATTY ACID BIOSYNTHESIS 1), fatty-acid synthase [Arabidopsis thaliana] (TAIR:AT1G74960.1); similar to FAB1 (FATTY ACID BIOSYNTHESIS 1), fatty-acid synthase [Arabidopsis thaliana] (TAIR:AT1G74960.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO24089.1); contains InterPro domain Beta-ketoacyl synthase, N-terminal (InterPro:IPR014030); contains InterPro domain Beta-ketoacyl synthase, C-terminal (InterPro:IPR014031); contains Int
Range:
from: 1581413
to: 1584685
Orientation: Reverse
Links:
TAIR
MIPS
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publications
when using AthaMap.
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