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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<------
NtERF2
<---------
RAP2.3(1)
<---------
ANAC46
<---------
DEAR3(1)
<---------
ATERF1(2)
--------->
ATERF1(2)
<---------
RAP2.3(3)
<---------
RAP2.3(2)
----------------->
AGL2
<---------
RAP2.6(2)
----------------->
AGL3
<------
MYB83
------>
NtERF2
<---------
ATERF1(1)
<---------
MYB46(3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<--------
P
--------->
RAP2.6(3)
--------->
ATERF1(1)
<XXXXXXXXXXXXXXXXXXXX
MIR839
=========================
--------->
ALFIN1
<------
NtERF2
<------
MYB46(1)
<------
ZmHOX2a(1)
<-----
--------->
HVH21
<---------
ANAC46
--------->
ALFIN1
-------
----->
At4g35610
<------
ZmHOX2a(1)
<---------
DEAR3(1)
<-----------
RAV1(1)
<------
>
CCA1(2)
--------->
ATERF1(1)
<---------
MYB46(3)
----------->
HVH21
<---------
DEAR3(1)
gctgaaatgggggaggcccaataacaggaaccctagtgtctcagtggctgcgatgaagagttggtgactgtggcggcaggacttcggcgagttgaagatc
1421600
--------->
ARR14(2)
----------------->
AGL1
<---------
SPL7
<---------
ARR14(2)
<---------
HSFB2a(2)
<---------
DEAR3(2)
================
------->
TEIL
--------->
PCF5
--------------->
AtSPL3
-------
=
HOX2a_HOX2a
<-----------
RAV1(1)
--------->
MYB52(1)
================
-
ZmHOX2a(2)
--------->
LBD16
--------->
ALFIN1
----------->
HVH21
<------
ZmHOX2a(1)
-->
ARR11(3)
<---------
LBD16
--------->
DAG2
----------->
TGA1
<---------
TOE2(3)
---
ARR11(3)
<-----------
HVH21
---------->
DOF2
--------->
CCA1(2)
<-------
GAMYB
<------
agagtggaatgaagcttcaccggatgttgtggcacaaaagtggtccagagactcaagatagacgagtgacggtaccatttgggttgaggaactgcaaatt
1421700
--------->
STY1(1)
<---------
STY1(1)
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<-------
GAMYB
--------->
ARR14(3)
<---------
ANAC58
<---------
ARR11(3)
<---------
ANAC46
--------->
ARR11(3)
--------->
ALFIN1
--------->
ANAC58
<---------
GLK1(1)
<---------
DEAR3(1)
--------->
ALFIN1
--------->
GLK1(1)
<---------
ANAC58
<---------
ANAC46
================
HOX2a_HOX2a
----------->
GT1
<---------
LBD16
-->
ARR14(2)
--------->
ZAT6
--------->
ETT(2)
--------->
ARR14(2)
--------->
ALFIN1
=================
HOX2a_HOX2a
<------
NtERF2
<---------
ETT(2)
<---------
ANAC46
--------->
ANAC58
---
ARR14(2)
<---------
MYB52(1)
----------->
HVH21
<---------
ARR14(2)
--------->
ICU4
<---
tggaagtgagagatctcgttagcactagggcggggttaaaatcgtcgacagtggccattggagtagatcgacggagtgaagcaatgttgaagggtatggg
1421800
<XXXXXXXXXXXXXXXXXXXX
MIR397B
<------
NtERF2
---------->
DOF2
--------->
HSFB2a(2)
<-
--------->
GLK1(2)
<---------
HSFB2a(2)
--
--------->
LBD16
--------->
ALFIN1
---
<---------
HSFB2a(2)
<---------
AtMYB61
======
------>
ZmHOX2a(2)
<-----------
RAV1(1)
---------
<---------
GLK1(1)
<--------
P
--------->
MYB55(2)
--------->
DAG2
--------->
GLK1(1)
<-------
GAMYB
--------->
ETT(1)
================
<---------
ARR11(3)
<---------
AHL20(2)
<---------
MYB46(3)
----------->
GT1
------
--------->
ARR11(3)
--------->
AHL20(2)
<---------
AtMYB61
-----------------------
-----
P
--------->
HSFB2a(2)
<---------
ANAC46
<---------
LBD16
---------->
DOF2
---------->
DOF2
<
taagtgatctccgagaatcaaagatggatttaatggagggttgctgtggtggtcgggaagatggagagaaaagcttagaagagttacaaaagtgatgcaa
1421900
<---------
MYB52(1)
<------
NtERF2
------>
NtERF2
--------->
DEAR3(1)
<---------
DEAR3(1)
--------->
SPL7
<---------
ALFIN1
------>
NtERF2
<---------
ATERF1(1)
------>
ZmHOX2a(2)
<---------
At4g35610
--------->
GLK1(1)
<------
ZmHOX2a(2)
--------->
At4g35610
<---------
YAB1
<---------
GLK1(1)
<------
NtERF2
------>
ZmHOX2a(1)
--------->
ARR11(3)
------>
NtERF2
--------->
HSFB2a(2)
--------
ARR11(3)
<---------
ARR11(3)
<---------
ANAC46
--------->
At4g35610
------->
ARR11(3)
--------->
ARR14(2)
--------->
ARR11(3)
--------->
DAG2
--------->
ZAT2
------>
YAB1
<---------
ARR14(2)
--------->
GLK1(2)
---------->
DOF2
<---------
At4g35610
===========================
bZIP_DOF
<---------
DEAR3(2)
--------->
DEAR3(1)
<---------
ZAT2
---
>
AtLEC2
<---------
ANAC46
<---------
RAP2.3(1)
<---------
DEAR3(1)
--------->
GLK1(2)
<--
===========================
bZIP_DOF
<---------
DEAR3(1)
--------->
RAP2.3(1)
xxxxxxxxxxxxxxxxxxxxxxx
---->
DOF2
--------->
O2
----------->
HVH21
--------->
DEAR3(1)
<---------
WOX13(1)
---
->
ANAC81
<---------
O2
--------->
ANAC46
--------->
DEAR3(2)
<------------
CBF
<------
---------
YAB1
<---------
TGA1a
--------->
ANAC46
--------->
MYB52(1)
--------->
ATHB12
<---------
HSFB2a(2)
agataatagagattgaagcgacttgggatctcccgacgccggtgagcatcttgctcaccggcgtcgaaaagtttgattgggaagctgtcctcgaaaatgg
1422000
<----------
DOF2
<---------
DAG2
*
TSS
--------->
LBD16
<---------
GLK1(2)
<---------
TOE2(3)
--->
NtERF2
--------->
ARR11(3)
<---------
RVE1(1)
-------
ZAT18
--------->
ARR14(2)
<---------
ATHB12
>
smallRNA(si3)
<---------
ARR14(2)
<------
ZmHOX2a(1)
<---------
CCA1(1)
------>
ZAT18
<---------
ARR11(3)
--------->
MYB59
--------->
ATHB12
-----
RAV1(1)
--------->
At4g35610
<------
ZmHOX2a(1)
--------->
MYB46(3)
<----
tgcccgagagagaaaactgaataagcagaacttc
agaacctttttgagttggaattgtctaggattaggaaatatggcaaccattggatatttaagggat
1422100
----------->
GT1
<---------
O2
<---------
ANAC46
<-----------
HVH21
<---------
MYB46(3)
<------
MYB46(1)
<------
MYB83
<---------
AHL20(2)
--------->
AHL20(1)
<---------
RVE1(1)
<---------
AHL20(1)
--------->
ARR11(3)
<---------
ARR11(3)
--
<---------
GLK1(2)
--------->
TOE2(3)
<---------
MYB46(3)
<-
--------->
RVE1(1)
--------->
ANAC46
<-----------
RAV1(1)
<-------
------
DOF2
<------
ZmHOX2a(2)
<---------
LBD16
--------->
TOE2(2)
--------->
ARR11(3)
--------->
AHL20(2)
ttttggaaaaaatatcgatcagattttttatttctctcggaaacaaaataatctacgttatatatgaaaatatttgttggtcacttggaaaaatttaaca
1422200
<---------
ICU4
<---------
YAB1
--------->
ICU4
-------->
HAHB4
--------->
YAB1
--------->
ATHB12
<---------
ICU4
--------->
ICU4
----------------->
AGL1
<---------
YAB1
<-----------------
AG
--------->
YAB1
<---------
WRKY18(1)
-------->
HAHB4
--------->
WRKY12
<---------
ICU4
<---------
ICU4
----------->
HVH21
--------->
ICU4
<--------
HAHB4
--------->
WRKY38(1)
<---------
AHL20(2)
--------->
YAB1
--------->
ARR11(3)
------->
ATHB12
<---------
ANAC46
--------->
YAB1
<---------
ATHB12
<---------
MYB52(1)
--------
MYB46(3)
--------->
ALFIN1
<---------
YAB1
--------->
WOX13(1)
----------->
GT1
<---
----
GT1
<---------
MYB46(3)
--------->
YAB1
<---------
YAB1
---------->
DOF2
<---------
WOX13(1)
atggttgaccctattggttatagtgggggattagctctgttttataataatgattattatgtctcaatcatttttcaaagtaatcggttaattgatattg
1422300
--
--
---
<----------
ID1
<------
----------->
GT1
<------
ZmHOX2a(2)
<------
<---------
TOE2(3)
XXXXXXXXXXXXXXXXXXXXXXX>
MIR829.1
--------->
ANAC46
----------->
GT1
<---------
YAB1
<---------
GLK1(1)
--------->
ARR11(3)
--------->
ANAC58
---------->
DOF2
<---------
TOE1(2)
--------->
AHL20(2)
--------->
ANAC58
--------
GT1
<---------
TOE2(2)
--------->
ARR14(2)
--------->
ZAT6
aaccagtttataaaggaaaaactatttgtcttatgtttgtatatggagacccgataccaaaaaatagagatcaagtttgggaacgattaacacgaattgg
1422400
<---------
ALFIN1
<-------
TEIL
--------->
CCA1(2)
--------->
ARR14(2)
<---------
ARR14(2)
<---------
LBD16
--------->
AHL20(2)
------->
ANAC58
<---------
AHL20(2)
--------->
ALFIN1
------->
ANAC58
<---------
WOX13(1)
--------->
AtLEC2
------>
SPL7
--------->
ATHB12
<---------
ANAC55(2)
---------
AtSPL3
<---------
YAB1
--------->
ANAC55(2)
---------
AtSPL8
<---------
AHL20(2)
--------->
ANAC55(1)
<------
NtERF2
tacgactcgggatacaccttggtttttaattggcgattttaatgcattaacatgtaaccatgaaaaatgagggggcagtttaagacatgcttcttcgttt
1422500
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AGI:
At2g04180.1
Description:
transposable element gene. non-LTR retrotransposon family (LINE), has a 3.6e-05 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)
Range:
from: 1422035
to: 1425389
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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