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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                       <------NtERF2
                                                                      <---------RAP2.3(1)
                                                                     <---------ANAC46
                                                                     <---------DEAR3(1)
                                                                     <---------ATERF1(2)
                                                                     --------->ATERF1(2)
                                                                     <---------RAP2.3(3)
                                                                     <---------RAP2.3(2)
             ----------------->AGL2                                  <---------RAP2.6(2)
             ----------------->AGL3                       <------MYB83------>NtERF2
          <---------ATERF1(1)                            <---------MYB46(3)
          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <--------P  --------->RAP2.6(3)
         --------->ATERF1(1)                 <XXXXXXXXXXXXXXXXXXXXMIR839   =========================
   --------->ALFIN1                          <------NtERF2<------MYB46(1)  <------ZmHOX2a(1)  <-----
--------->HVH21                            <---------ANAC46       --------->ALFIN1           -------
----->At4g35610        <------ZmHOX2a(1)   <---------DEAR3(1)   <-----------RAV1(1)          <------
>CCA1(2)--------->ATERF1(1)              <---------MYB46(3) ----------->HVH21   <---------DEAR3(1)
 
gctgaaatgggggaggcccaataacaggaaccctagtgtctcagtggctgcgatgaagagttggtgactgtggcggcaggacttcggcgagttgaagatc  1421600
                                                                                     --------->ARR14(2)
                                                                      ----------------->AGL1
                                                                   <---------SPL7    <---------ARR14(2)
                                         <---------HSFB2a(2)      <---------DEAR3(2)================
        ------->TEIL                   --------->PCF5            --------------->AtSPL3      -------
=HOX2a_HOX2a           <-----------RAV1(1)                     --------->MYB52(1)   ================
-ZmHOX2a(2)      --------->LBD16    --------->ALFIN1          ----------->HVH21     <------ZmHOX2a(1)
-->ARR11(3)    <---------LBD16   --------->DAG2               ----------->TGA1    <---------TOE2(3)
---ARR11(3)<-----------HVH21    ---------->DOF2       --------->CCA1(2)       <-------GAMYB  <------
 
agagtggaatgaagcttcaccggatgttgtggcacaaaagtggtccagagactcaagatagacgagtgacggtaccatttgggttgaggaactgcaaatt  1421700
                     --------->STY1(1)
                     <---------STY1(1)
          ------>ZmHOX2a(2)
         <------ZmHOX2a(2)    <-------GAMYB
        --------->ARR14(3)<---------ANAC58
        <---------ARR11(3)<---------ANAC46
        --------->ARR11(3)--------->ALFIN1                                 --------->ANAC58
       <---------GLK1(1)  <---------DEAR3(1)                            --------->ALFIN1
       --------->GLK1(1)  <---------ANAC58                            <---------ANAC46
================HOX2a_HOX2a  ----------->GT1                      <---------LBD16
-->ARR14(2)       --------->ZAT6         --------->ETT(2)     --------->ARR14(2)          --------->ALFIN1
=================HOX2a_HOX2a<------NtERF2<---------ETT(2)<---------ANAC46  --------->ANAC58
---ARR14(2)   <---------MYB52(1)         ----------->HVH21    <---------ARR14(2)--------->ICU4  <---
 
tggaagtgagagatctcgttagcactagggcggggttaaaatcgtcgacagtggccattggagtagatcgacggagtgaagcaatgttgaagggtatggg  1421800
                <XXXXXXXXXXXXXXXXXXXXMIR397B       <------NtERF2
               ---------->DOF2                    --------->HSFB2a(2)                             <-
            --------->GLK1(2)                     <---------HSFB2a(2)                             --
        --------->LBD16                   --------->ALFIN1                                       ---
        <---------HSFB2a(2)               <---------AtMYB61                                   ======
    ------>ZmHOX2a(2)                   <-----------RAV1(1)                                ---------
   <---------GLK1(1)                <--------P--------->MYB55(2)                     --------->DAG2
   --------->GLK1(1)               <-------GAMYB --------->ETT(1)                   ================
  <---------ARR11(3)      <---------AHL20(2)  <---------MYB46(3)             ----------->GT1  ------
  --------->ARR11(3)     --------->AHL20(2)  <---------AtMYB61               -----------------------
-----P  --------->HSFB2a(2)     <---------ANAC46 <---------LBD16 ---------->DOF2    ---------->DOF2<
 
taagtgatctccgagaatcaaagatggatttaatggagggttgctgtggtggtcgggaagatggagagaaaagcttagaagagttacaaaagtgatgcaa  1421900
                                     <---------MYB52(1)
                                  <------NtERF2
                                 ------>NtERF2
                                --------->DEAR3(1)
                                <---------DEAR3(1)
                               --------->SPL7
                              <---------ALFIN1
                              ------>NtERF2
                              <---------ATERF1(1)
                         ------>ZmHOX2a(2)
                        <---------At4g35610
                        --------->GLK1(1)
                        <------ZmHOX2a(2)
                        --------->At4g35610                          <---------YAB1
                        <---------GLK1(1)                  <------NtERF2              ------>ZmHOX2a(1)
                       --------->ARR11(3)                 ------>NtERF2               --------->HSFB2a(2)
--------ARR11(3)       <---------ARR11(3)                <---------ANAC46      --------->At4g35610
------->ARR11(3)       --------->ARR14(2)  --------->ARR11(3)   --------->DAG2 --------->ZAT2
------>YAB1            <---------ARR14(2)  --------->GLK1(2)   ---------->DOF2 <---------At4g35610
===========================bZIP_DOF <---------DEAR3(2)   --------->DEAR3(1)    <---------ZAT2    ---
>AtLEC2          <---------ANAC46<---------RAP2.3(1)     <---------DEAR3(1)   --------->GLK1(2)  <--
===========================bZIP_DOF<---------DEAR3(1)   --------->RAP2.3(1)  xxxxxxxxxxxxxxxxxxxxxxx
---->DOF2        --------->O2----------->HVH21        --------->DEAR3(1)<---------WOX13(1)       ---
->ANAC81         <---------O2--------->ANAC46        --------->DEAR3(2)<------------CBF      <------
---------YAB1    <---------TGA1a--------->ANAC46    --------->MYB52(1)--------->ATHB12<---------HSFB2a(2)
 
agataatagagattgaagcgacttgggatctcccgacgccggtgagcatcttgctcaccggcgtcgaaaagtttgattgggaagctgtcctcgaaaatgg  1422000
                                    <----------DOF2
                                   <---------DAG2
                                  *TSS
--------->LBD16                 <---------GLK1(2)                                         <---------TOE2(3)
--->NtERF2              --------->ARR11(3)                                          <---------RVE1(1)
-------ZAT18            --------->ARR14(2)                                  <---------ATHB12
>smallRNA(si3)          <---------ARR14(2)                      <------ZmHOX2a(1)   <---------CCA1(1)
------>ZAT18            <---------ARR11(3)                    --------->MYB59--------->ATHB12
-----RAV1(1)        --------->At4g35610                   <------ZmHOX2a(1) --------->MYB46(3) <----
 
tgcccgagagagaaaactgaataagcagaacttcagaacctttttgagttggaattgtctaggattaggaaatatggcaaccattggatatttaagggat  1422100
                                                                                  ----------->GT1
                                                                               <---------O2
                                                                               <---------ANAC46
                                                                           <-----------HVH21
                                                                          <---------MYB46(3)
                                                                          <------MYB46(1)
                                                                          <------MYB83
                       <---------AHL20(2)                        --------->AHL20(1)
                   <---------RVE1(1)                             <---------AHL20(1)
                  --------->ARR11(3)                             <---------ARR11(3)               --
                  <---------GLK1(2)                 --------->TOE2(3) <---------MYB46(3)          <-
        --------->RVE1(1)                          --------->ANAC46   <-----------RAV1(1)   <-------
------DOF2    <------ZmHOX2a(2) <---------LBD16 --------->TOE2(2)--------->ARR11(3)       --------->AHL20(2)
 
ttttggaaaaaatatcgatcagattttttatttctctcggaaacaaaataatctacgttatatatgaaaatatttgttggtcacttggaaaaatttaaca  1422200
                                                  <---------ICU4
                                                 <---------YAB1
                                                 --------->ICU4
                                               -------->HAHB4
                                               --------->YAB1
                                               --------->ATHB12
                                               <---------ICU4
                                              --------->ICU4
    ----------------->AGL1                    <---------YAB1
   <-----------------AG                     --------->YAB1
  <---------WRKY18(1)                       -------->HAHB4
 --------->WRKY12                           <---------ICU4      <---------ICU4
 ----------->HVH21                         --------->ICU4       <--------HAHB4
 --------->WRKY38(1)                      <---------AHL20(2)    --------->YAB1            --------->ARR11(3)
------->ATHB12        <---------ANAC46   --------->YAB1        <---------ATHB12    <---------MYB52(1)
--------MYB46(3)   --------->ALFIN1     <---------YAB1       --------->WOX13(1)  ----------->GT1<---
----GT1    <---------MYB46(3)         --------->YAB1<---------YAB1      ---------->DOF2<---------WOX13(1)
 
atggttgaccctattggttatagtgggggattagctctgttttataataatgattattatgtctcaatcatttttcaaagtaatcggttaattgatattg  1422300
                                                                                                  --
                                                                                                  --
                                                                                                 ---
          <----------ID1                                                                     <------
          ----------->GT1                                         <------ZmHOX2a(2)          <------
         <---------TOE2(3)                  XXXXXXXXXXXXXXXXXXXXXXX>MIR829.1            --------->ANAC46
         ----------->GT1     <---------YAB1<---------GLK1(1)     --------->ARR11(3)     --------->ANAC58
       ---------->DOF2      <---------TOE1(2)           --------->AHL20(2)              --------->ANAC58
--------GT1                 <---------TOE2(2)    --------->ARR14(2)                   --------->ZAT6
 
aaccagtttataaaggaaaaactatttgtcttatgtttgtatatggagacccgataccaaaaaatagagatcaagtttgggaacgattaacacgaattgg  1422400
          <---------ALFIN1
         <-------TEIL
        --------->CCA1(2)
       --------->ARR14(2)
       <---------ARR14(2)
   <---------LBD16                --------->AHL20(2)
------->ANAC58                    <---------AHL20(2)             --------->ALFIN1
------->ANAC58           <---------WOX13(1)             --------->AtLEC2
------>SPL7            --------->ATHB12         <---------ANAC55(2)
---------AtSPL3       <---------YAB1            --------->ANAC55(2)
---------AtSPL8       <---------AHL20(2)        --------->ANAC55(1)   <------NtERF2
 
tacgactcgggatacaccttggtttttaattggcgattttaatgcattaacatgtaaccatgaaaaatgagggggcagtttaagacatgcttcttcgttt  1422500
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AGI:  At2g04180.1   
Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 3.6e-05 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)
Range:  from: 1422035    to: 1425389    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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